NO01G04800.1, NO01G04800.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G04800.1
Unique NameNO01G04800.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1718
Alignment locationchr1:1272304..1274021 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1272304..1274021 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G04800.1 vs.
Match: EWM29401.1 (trna (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 595.1 bits (1533), Expect = 1.800e-166
Identity = 297/460 (64.57%), Postives = 341/460 (74.13%), Query Frame = 0 
Query:    8 IRKRLLPRVAVGLSGGVDSSVAAMLLLQQGYEVVGVHMQNWDTSDEEGMSACPETEDLKDAQEVSKQLGIPFYRADFSRPYWTNVFTPFLEDYERGWTPNPDVLCNREIKFSKFRNFAQEALRTPWVATGHYARLRY--PCPPSLP----PSSEAIGAP--------------QLLVGVDDSKDQSYFLSHVPSLAFQHTLFPLGHLTKTQVRALATNSGLCTAQKKESMGICFVGKRRMGDFLPEYLKPLPGLLVSVTDGAVLGEQEGGLTLLTVGQGARIGGEATKWFVCGKDMEKGVVWVAPGTNHPALYCDWLLVKEEKFNWIGRRPRELQRLVREDHHHHHSSSSSNNNNNNNFNNNSNPSSRIP----VSMPFRCEYRVRYRQPLASCTVSLPPSAPGLLRIDFDAPQRAVALKQTLALYDGERCLGGGVIVGVGPSYWERGKELPEERVEWAV 444
            IR RLLPRVAVGLSGGVDSSVAA+LLL+QGYEV+GVHMQNWDT+DE G SACP TEDL+DA+ VSKQLGIPF+R DF RPYWT+VFTPFLE+Y++G TPNPD+LCNREIKF +F+ FA++ + TPW+ATGHYARLR+     PSLP    PSS + G P              +L  G+D++KDQSYFLS VP+ AFQH LFPLGHL K QVR +A  +GLCTA+KKESMGICFVGKRRMG FLPEYL+P  G  VSVT G VLG QEG LTLLTVGQGARIGG   KWFVCGKDME G ++VAPGT+HPALYCDWLLV +E FNWIG+ P E+                          + S P+ R+P     S+ FRCEYR RYRQPLA C VS     PG+LR+DFD PQR VAL QTLALY GERCLGGG IV VGPSY+ +GK LPE R+ WAV
Sbjct:    6 IRNRLLPRVAVGLSGGVDSSVAALLLLEQGYEVIGVHMQNWDTTDEAGASACPYTEDLRDAEAVSKQLGIPFHRVDFCRPYWTHVFTPFLEEYDKGLTPNPDILCNREIKFDRFQGFARDVVGTPWIATGHYARLRHFPSLGPSLPVGPLPSSTSEGGPRNPRACTGSHSSLPELCTGMDEAKDQSYFLSQVPTRAFQHVLFPLGHLRKGQVRDMAHAAGLCTAEKKESMGICFVGKRRMGAFLPEYLQPRAGTFVSVTTGEVLGTQEGALTLLTVGQGARIGGAEEKWFVCGKDMEAGRIYVAPGTDHPALYCDWLLVAKEDFNWIGQAPWEM---------------------GKKHEDRSQPTDRLPSTASPSVAFRCEYRARYRQPLAGCQVSTSSDHPGMLRVDFDVPQRGVALSQTLALYAGERCLGGGAIVEVGPSYYAQGKRLPERRLTWAV 444
The following BLAST results are available for this feature:
BLAST of NO01G04800.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29401.11.800e-16664.57trna (5-methylaminomethyl-2-thiouridylate)-methylt... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G04800NO01G04800Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G04800.1NO01G04800.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G04800.1.cds1NO01G04800.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G04800.1 ID=NO01G04800.1|Name=NO01G04800.1|organism=Nannochloropsis oceanica|type=mRNA|length=1718bp
ACAGCATCATCATTTGCAGCAGCCGGCCAGTCATAGTTACGTTGCTACAT
CAGCTTTTCTCATTTGCCTCCTTTTATGTCACGCCACCGCCCATGCAAGC
CCTCCGATAGCAATACAACCCTTACGGACGCAAAGCTAAGATCATTATTT
GTGCGAGGGCAGCCTCACTTGTGGGAGCCGTGGCTGTGGGGGCGTGGAAG
TTAGAGGCCGGCGTGTGGAAAAGAAGGGGTTACTATCTTTGCTCGCTGAG
ATTTGCGCAGCTTGCAATTCGGTGCCGCCATTGTCGCCTCCTTGGCGCGT
CTTGTAACAAGAACGGAAACAAAGAAAAGAGTACAATACCAGCACGTATC
TGCTCTGTCAAACGAAAAACAAACCATGGCCAACACCACGGTCACCATTC
GCAAGCGCCTTCTGCCCCGCGTCGCAGTGGGGCTCTCGGGCGGGGTCGAC
TCCTCCGTGGCAGCCATGCTCCTCCTCCAGCAGGGTTACGAGGTGGTGGG
CGTGCACATGCAAAATTGGGACACGAGTGACGAGGAAGGAATGAGTGCGT
GTCCAGAAACTGAGGACCTGAAAGACGCCCAGGAAGTAAGCAAGCAGTTG
GGAATCCCTTTTTACCGTGCCGACTTTTCGAGGCCGTACTGGACGAATGT
ATTTACGCCTTTTTTGGAGGATTACGAGAGGGGATGGACGCCAAACCCGG
ATGTGTTGTGTAATCGCGAGATTAAATTTTCAAAGTTCCGGAATTTTGCC
CAAGAAGCCCTCAGGACTCCCTGGGTAGCGACGGGTCATTATGCGAGGCT
GCGGTATCCTTGTCCTCCCTCCCTTCCTCCTTCATCTGAAGCAATAGGAG
CACCACAGCTGCTTGTCGGCGTCGATGATAGTAAAGACCAAAGCTACTTC
CTCTCCCACGTCCCCTCCTTGGCCTTTCAGCACACCCTCTTCCCCCTCGG
GCACCTGACAAAAACCCAAGTCCGTGCCCTCGCCACAAATAGTGGGCTGT
GTACGGCGCAAAAGAAAGAGAGCATGGGGATCTGTTTTGTAGGGAAGCGA
CGCATGGGCGATTTCCTGCCTGAATACTTGAAACCGCTGCCCGGGCTGCT
GGTTTCTGTAACAGACGGAGCAGTGTTGGGAGAGCAAGAGGGAGGGTTAA
CCTTGCTTACGGTTGGGCAGGGGGCACGGATAGGAGGTGAGGCGACGAAG
TGGTTTGTGTGTGGTAAGGACATGGAAAAGGGGGTGGTGTGGGTGGCACC
AGGAACGAATCACCCCGCCCTGTACTGTGACTGGCTGCTGGTGAAGGAGG
AGAAGTTCAACTGGATCGGGAGGAGGCCGAGGGAGTTGCAGCGATTGGTG
AGGGAAGATCACCACCACCACCACAGCAGCAGCAGCAGCAACAACAACAA
CAACAACAACTTCAACAACAATAGTAATCCCAGCAGTAGGATTCCGGTAT
CGATGCCTTTCCGATGTGAATACCGGGTGCGGTATCGACAGCCTCTCGCC
AGCTGCACGGTGTCTCTTCCTCCATCAGCGCCTGGTTTGCTACGCATTGA
TTTCGATGCACCCCAACGGGCGGTCGCGTTGAAGCAGACGCTGGCATTGT
ATGACGGGGAAAGGTGCTTGGGGGGAGGGGTGATTGTGGGGGTGGGGCCA
AGTTATTGGGAGAGAGGGAAAGAACTGCCAGAGGAGAGGGTGGAGTGGGC
GGTATAGGGAGGGTGGGA
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protein sequence of NO01G04800.1

>NO01G04800.1-protein ID=NO01G04800.1-protein|Name=NO01G04800.1|organism=Nannochloropsis oceanica|type=polypeptide|length=444bp
MANTTVTIRKRLLPRVAVGLSGGVDSSVAAMLLLQQGYEVVGVHMQNWDT
SDEEGMSACPETEDLKDAQEVSKQLGIPFYRADFSRPYWTNVFTPFLEDY
ERGWTPNPDVLCNREIKFSKFRNFAQEALRTPWVATGHYARLRYPCPPSL
PPSSEAIGAPQLLVGVDDSKDQSYFLSHVPSLAFQHTLFPLGHLTKTQVR
ALATNSGLCTAQKKESMGICFVGKRRMGDFLPEYLKPLPGLLVSVTDGAV
LGEQEGGLTLLTVGQGARIGGEATKWFVCGKDMEKGVVWVAPGTNHPALY
CDWLLVKEEKFNWIGRRPRELQRLVREDHHHHHSSSSSNNNNNNNFNNNS
NPSSRIPVSMPFRCEYRVRYRQPLASCTVSLPPSAPGLLRIDFDAPQRAV
ALKQTLALYDGERCLGGGVIVGVGPSYWERGKELPEERVEWAV*
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mRNA from alignment at chr1:1272304..1274021+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G04800.1 ID=NO01G04800.1|Name=NO01G04800.1|organism=Nannochloropsis oceanica|type=mRNA|length=1718bp|location=Sequence derived from alignment at chr1:1272304..1274021+ (Nannochloropsis oceanica)
ACAGCATCATCATTTGCAGCAGCCGGCCAGTCATAGTTACGTTGCTACAT
CAGCTTTTCTCATTTGCCTCCTTTTATGTCACGCCACCGCCCATGCAAGC
CCTCCGATAGCAATACAACCCTTACGGACGCAAAGCTAAGATCATTATTT
GTGCGAGGGCAGCCTCACTTGTGGGAGCCGTGGCTGTGGGGGCGTGGAAG
TTAGAGGCCGGCGTGTGGAAAAGAAGGGGTTACTATCTTTGCTCGCTGAG
ATTTGCGCAGCTTGCAATTCGGTGCCGCCATTGTCGCCTCCTTGGCGCGT
CTTGTAACAAGAACGGAAACAAAGAAAAGAGTACAATACCAGCACGTATC
TGCTCTGTCAAACGAAAAACAAACCATGGCCAACACCACGGTCACCATTC
GCAAGCGCCTTCTGCCCCGCGTCGCAGTGGGGCTCTCGGGCGGGGTCGAC
TCCTCCGTGGCAGCCATGCTCCTCCTCCAGCAGGGTTACGAGGTGGTGGG
CGTGCACATGCAAAATTGGGACACGAGTGACGAGGAAGGAATGAGTGCGT
GTCCAGAAACTGAGGACCTGAAAGACGCCCAGGAAGTAAGCAAGCAGTTG
GGAATCCCTTTTTACCGTGCCGACTTTTCGAGGCCGTACTGGACGAATGT
ATTTACGCCTTTTTTGGAGGATTACGAGAGGGGATGGACGCCAAACCCGG
ATGTGTTGTGTAATCGCGAGATTAAATTTTCAAAGTTCCGGAATTTTGCC
CAAGAAGCCCTCAGGACTCCCTGGGTAGCGACGGGTCATTATGCGAGGCT
GCGGTATCCTTGTCCTCCCTCCCTTCCTCCTTCATCTGAAGCAATAGGAG
CACCACAGCTGCTTGTCGGCGTCGATGATAGTAAAGACCAAAGCTACTTC
CTCTCCCACGTCCCCTCCTTGGCCTTTCAGCACACCCTCTTCCCCCTCGG
GCACCTGACAAAAACCCAAGTCCGTGCCCTCGCCACAAATAGTGGGCTGT
GTACGGCGCAAAAGAAAGAGAGCATGGGGATCTGTTTTGTAGGGAAGCGA
CGCATGGGCGATTTCCTGCCTGAATACTTGAAACCGCTGCCCGGGCTGCT
GGTTTCTGTAACAGACGGAGCAGTGTTGGGAGAGCAAGAGGGAGGGTTAA
CCTTGCTTACGGTTGGGCAGGGGGCACGGATAGGAGGTGAGGCGACGAAG
TGGTTTGTGTGTGGTAAGGACATGGAAAAGGGGGTGGTGTGGGTGGCACC
AGGAACGAATCACCCCGCCCTGTACTGTGACTGGCTGCTGGTGAAGGAGG
AGAAGTTCAACTGGATCGGGAGGAGGCCGAGGGAGTTGCAGCGATTGGTG
AGGGAAGATCACCACCACCACCACAGCAGCAGCAGCAGCAACAACAACAA
CAACAACAACTTCAACAACAATAGTAATCCCAGCAGTAGGATTCCGGTAT
CGATGCCTTTCCGATGTGAATACCGGGTGCGGTATCGACAGCCTCTCGCC
AGCTGCACGGTGTCTCTTCCTCCATCAGCGCCTGGTTTGCTACGCATTGA
TTTCGATGCACCCCAACGGGCGGTCGCGTTGAAGCAGACGCTGGCATTGT
ATGACGGGGAAAGGTGCTTGGGGGGAGGGGTGATTGTGGGGGTGGGGCCA
AGTTATTGGGAGAGAGGGAAAGAACTGCCAGAGGAGAGGGTGGAGTGGGC
GGTATAGGGAGGGTGGGA
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Coding sequence (CDS) from alignment at chr1:1272304..1274021+

>NO01G04800.1 ID=NO01G04800.1|Name=NO01G04800.1|organism=Nannochloropsis oceanica|type=CDS|length=1332bp|location=Sequence derived from alignment at chr1:1272304..1274021+ (Nannochloropsis oceanica)
ATGGCCAACACCACGGTCACCATTCGCAAGCGCCTTCTGCCCCGCGTCGC
AGTGGGGCTCTCGGGCGGGGTCGACTCCTCCGTGGCAGCCATGCTCCTCC
TCCAGCAGGGTTACGAGGTGGTGGGCGTGCACATGCAAAATTGGGACACG
AGTGACGAGGAAGGAATGAGTGCGTGTCCAGAAACTGAGGACCTGAAAGA
CGCCCAGGAAGTAAGCAAGCAGTTGGGAATCCCTTTTTACCGTGCCGACT
TTTCGAGGCCGTACTGGACGAATGTATTTACGCCTTTTTTGGAGGATTAC
GAGAGGGGATGGACGCCAAACCCGGATGTGTTGTGTAATCGCGAGATTAA
ATTTTCAAAGTTCCGGAATTTTGCCCAAGAAGCCCTCAGGACTCCCTGGG
TAGCGACGGGTCATTATGCGAGGCTGCGGTATCCTTGTCCTCCCTCCCTT
CCTCCTTCATCTGAAGCAATAGGAGCACCACAGCTGCTTGTCGGCGTCGA
TGATAGTAAAGACCAAAGCTACTTCCTCTCCCACGTCCCCTCCTTGGCCT
TTCAGCACACCCTCTTCCCCCTCGGGCACCTGACAAAAACCCAAGTCCGT
GCCCTCGCCACAAATAGTGGGCTGTGTACGGCGCAAAAGAAAGAGAGCAT
GGGGATCTGTTTTGTAGGGAAGCGACGCATGGGCGATTTCCTGCCTGAAT
ACTTGAAACCGCTGCCCGGGCTGCTGGTTTCTGTAACAGACGGAGCAGTG
TTGGGAGAGCAAGAGGGAGGGTTAACCTTGCTTACGGTTGGGCAGGGGGC
ACGGATAGGAGGTGAGGCGACGAAGTGGTTTGTGTGTGGTAAGGACATGG
AAAAGGGGGTGGTGTGGGTGGCACCAGGAACGAATCACCCCGCCCTGTAC
TGTGACTGGCTGCTGGTGAAGGAGGAGAAGTTCAACTGGATCGGGAGGAG
GCCGAGGGAGTTGCAGCGATTGGTGAGGGAAGATCACCACCACCACCACA
GCAGCAGCAGCAGCAACAACAACAACAACAACAACTTCAACAACAATAGT
AATCCCAGCAGTAGGATTCCGGTATCGATGCCTTTCCGATGTGAATACCG
GGTGCGGTATCGACAGCCTCTCGCCAGCTGCACGGTGTCTCTTCCTCCAT
CAGCGCCTGGTTTGCTACGCATTGATTTCGATGCACCCCAACGGGCGGTC
GCGTTGAAGCAGACGCTGGCATTGTATGACGGGGAAAGGTGCTTGGGGGG
AGGGGTGATTGTGGGGGTGGGGCCAAGTTATTGGGAGAGAGGGAAAGAAC
TGCCAGAGGAGAGGGTGGAGTGGGCGGTATAG
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Synonyms
Publications