NO01G04750.2, NO01G04750.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G04750.2
Unique NameNO01G04750.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2164
Alignment locationchr1:1254643..1257055 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1254643..1257055 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G04750.2 vs.
Match: EWM29423.1 (glycerol-3-phosphate dehydrogenase 1-like protein [Nannochloropsis gaditana])

HSP 1 Score: 372.5 bits (955), Expect = 1.200e-99
Identity = 181/272 (66.54%), Postives = 219/272 (80.51%), Query Frame = 0 
Query:   17 GIYLLLSAAIVLLMVL---------------NPAKGQSPLHKVSIVGSGNFGSAVARLLGRNVLQHPKHFETDIRMWVFEEELPDGRKLSEVINAEHENVKYLPGVRLPSNVRAIPDLEVAVRDASIIIMVVPQQHCATLLPRLRSCIRQGAVAVSLIKGLDFDDNGPVLITDLIRKGLGGDV-EVCVLMGANVADEVARDEFCEATVGCRDTTGAGILVQRLFDCPRFRVEVAPDPMGVELCGALKNVVALGAGFCDGLGWGGNTKVCCFR 273
            GI++L+SAA+  L+++                P+      H ++IVGSGNFGSA+ARLLGRNVL+ PKHF +++RMWVFEEEL DGRKLS+VINA+HENVKYLPG++LP+NVRA+PDL  AVR+ASI++ V+P Q    LLPR+ SC+ +GA+AVSL+KGLDFDD GPVLITD+IR+GLG DV EVCVLMGANVADE+ARDEFCEAT+GC D  GAG ++Q+LFDCP FRVEV PDP+GVELCGALKNVVAL AGFCDGL WGGNTK    R
Sbjct:   17 GIFVLMSAALSFLLIVWRFSLAEAGRSHHFEGPSSNPVKPHSITIVGSGNFGSAIARLLGRNVLRSPKHFRSEVRMWVFEEELDDGRKLSDVINADHENVKYLPGIQLPTNVRAVPDLSDAVRNASIVVFVLPHQFLPGLLPRISSCLHRGAMAVSLVKGLDFDDEGPVLITDMIREGLGEDVSEVCVLMGANVADEMARDEFCEATLGCPDPEGAGAVLQQLFDCPTFRVEVTPDPIGVELCGALKNVVALAAGFCDGLDWGGNTKAAIIR 288
The following BLAST results are available for this feature:
BLAST of NO01G04750.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29423.11.200e-9966.54glycerol-3-phosphate dehydrogenase 1-like protein ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G04750NO01G04750Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G04750.2NO01G04750.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G04750.2.cds1NO01G04750.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G04750.2.cds2NO01G04750.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G04750.2 ID=NO01G04750.2|Name=NO01G04750.2|organism=Nannochloropsis oceanica|type=mRNA|length=2164bp
TGGAAATTTATTTCCTTCCTGTCTTAAGTTGTATATTGGTGGTGGCGTAG
TCAGGAAGGGAAATGTTGTTCTGGCTGGGTGAGGAGAGGTAGGGACATGC
GCAGGGAGTGGCCAATGACCAAATACGCTGCGGAAAAAGTCGCCAGTGCT
TGCACTTAAGCGAGACATGAGTTCCCGAGCTTGTGGTCATTCTATGAGGC
CGCGGCGTGAATGGCATGTGCCCCGCACGCTGGTATCATACGCGGGCAGG
AAGGCGTATCATTGCTGTGAGTGCCAGGACAGGATGGATATCATGGAGAA
GCACAACACGAGTTGTGAGAACCAGAAACGCCATGCGCGATTTCTTTCTT
GTTTTCGTTTGGTGTATGAGACATGTGAGTAAAAGGATTGCTGTGCTTTT
CCTGCGGATGACAGGAATAAGAAGATGTGGTAAAATGCTATTGATATTGC
ACTCTAGATCGGCGATCGCGACTTTTTCTCGGCACCCCTGCGTTTCTAGA
GTCAAGCTTGGAGCGGTAAGGTAACGCGTATCCCGGGTAGCTATACGGTT
TCATTGGTAAAATCATCTTTAAGACCCTTCCTCTTTTTCATGCAATCCAT
AACGCAGCCACACAGGTCCTGAGCCAACCAATCTCACCCCAAACTCCGCC
TACCTCCTCCACCCTTGTCCCCCTTCCTTGCCCTCCTCCTCCATTTGAGC
GCATGACCCAACCACCCAGCACCCTTGGCCATCTACCAAGCTGCAAATCC
GGTATCTACTTACTATTATCCGCGGCGATCGTGCTGCTGATGGTCCTCAA
CCCGGCCAAGGGCCAATCGCCTCTCCACAAGGTATCGATTGTGGGCAGCG
GCAACTTCGGTTCCGCCGTGGCCCGCCTCTTAGGTCGCAATGTCCTGCAA
CACCCCAAACACTTTGAGACGGATATTCGTATGTGGGTCTTTGAGGAGGA
GCTACCCGACGGTCGGAAGTTGAGCGAGGTCATTAATGCTGAGCATGAAA
ACGTCAAGTACTTGCCTGGGGTCCGACTACCCTCCAATGTACGGGCAATC
CCTGATTTGGAAGTCGCGGTAAGAGATGCATCAATCATCATTATGGTCGT
GCCGCAACAACATTGTGCCACCTTGCTTCCTCGCCTCCGGTCCTGCATAC
GGCAAGGTGCCGTAGCCGTCTCTTTGATCAAAGGGTTAGACTTCGATGAC
AATGGTCCCGTGCTTATCACTGACTTAATTCGGAAGGGCCTGGGCGGAGA
TGTCGAAGTTTGCGTCTTGATGGGCGCCAACGTGGCCGACGAAGTGGCTC
GCGATGAGTTTTGCGAGGCCACAGTCGGGTGTCGTGATACGACCGGGGCA
GGTATATTGGTACAGCGGCTATTCGATTGCCCGAGATTTCGAGTGGAGGT
GGCGCCTGACCCTATGGGCGTCGAGCTGTGCGGAGCCCTGAAAAATGTGG
TGGCCCTTGGGGCGGGCTTCTGCGATGGGCTGGGCTGGGGGGGGAATACG
AAGGTATGTTGTTTTCGTGCGTGCTTAAATGCCGGTATTTGATTATTGTT
ACAGGTTGATGTTAGTGCTGACCGTCGCTTCATCCCGTGCTTTCCATTCA
TTCGTCGCTCGTTTCCTCTTTTGGTCATGCCCTCATTCCTTCTTTCCGTA
GGCAGCTGTCATTCGCCGAGGCCTCCTAGAAATGCGTCGGCTCTGCAAAC
TCCTTGATCCCCATGTTCGCGATGCCACGTTCTTCGAAAGCTGTGGTGTG
GCCGATCTTATTACCACCTGCTATGGCGGGCGGAACAGGAAGTGTGCCGA
GCGTTTCGCCCGGGCAGACGGAAACATGTCGTGGGACGACATCGAGAAGG
AGCAATTGGGGGGTCAACACTTGCAAGGGACTAAGACAGCGGCCAATCTC
CACAGTCTACTAGAGCGAAAGAGGGTAGTGGGTGATTTTCCTTTGTTTTC
CACAGTGTACCAAATTGCATTTCGAGGGCGACATCCAAGAACTTTGGTAA
ATGACCTGTGATGTTTCTCGTAACGGGGACACCAAAATCTCTAGAATGAG
TCGCCAGATGTGCCCCATAAGATGTTGACAATAGTAATTAAGCAAGATAA
GGTATTTACAAATGATACAGCAATATTTTAAAACGTAACGATCTGGTGGC
AAGTGCATGGTAGC
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protein sequence of NO01G04750.2

>NO01G04750.2-protein ID=NO01G04750.2-protein|Name=NO01G04750.2|organism=Nannochloropsis oceanica|type=polypeptide|length=280bp
MTQPPSTLGHLPSCKSGIYLLLSAAIVLLMVLNPAKGQSPLHKVSIVGSG
NFGSAVARLLGRNVLQHPKHFETDIRMWVFEEELPDGRKLSEVINAEHEN
VKYLPGVRLPSNVRAIPDLEVAVRDASIIIMVVPQQHCATLLPRLRSCIR
QGAVAVSLIKGLDFDDNGPVLITDLIRKGLGGDVEVCVLMGANVADEVAR
DEFCEATVGCRDTTGAGILVQRLFDCPRFRVEVAPDPMGVELCGALKNVV
ALGAGFCDGLGWGGNTKVCCFRACLNAGI*
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mRNA from alignment at chr1:1254643..1257055+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G04750.2 ID=NO01G04750.2|Name=NO01G04750.2|organism=Nannochloropsis oceanica|type=mRNA|length=2413bp|location=Sequence derived from alignment at chr1:1254643..1257055+ (Nannochloropsis oceanica)
TGGAAATTTATTTCCTTCCTGTCTTAAGTTGTATATTGGTGGTGGCGTAG
TCAGGAAGGGAAATGTTGTTCTGGCTGGGTGAGGAGAGGTAGGGACATGC
GCAGGGAGTGGCCAATGACCAAATACGCTGCGGAAAAAGTCGCCAGTGCT
TGCACTTAAGCGAGACATGAGTTCCCGAGCTTGTGGTCATTCTATGAGGC
CGCGGCGTGAATGGCATGTGCCCCGCACGCTGGTATCATACGCGGGCAGG
AAGGCGTATCATTGCTGTGAGTGCCAGGACAGGATGGATATCATGGAGAA
GCACAACACGAGTTGTGAGAACCAGAAACGCCATGCGCGATTTCTTTCTT
GTTTTCGTTTGGTGTATGAGACATGTGAGTAAAAGGATTGCTGTGCTTTT
CCTGCGGATGACAGGAATAAGAAGATGTGGTAAAATGCTATTGATATTGC
ACTCTAGATCGGCGATCGCGACTTTTTCTCGGCACCCCTGCGTTTCTAGA
GTCAAGCTTGGAGCGGTAAGGTAACGCGTATCCCGGGTAGCTATACGGTT
TCATTGGTAAAATCATCTTTAAGACCCTTCCTCTTTTTCATGCAATCCAT
AACGCAGCCACACAGGTCCTGAGCCAACCAATCTCACCCCAAACTCCGCC
TACCTCCTCCACCCTTGTCCCCCTTCCTTGCCCTCCTCCTCCATTTGAGC
GCATGACCCAACCACCCAGCACCCTTGGCCATCTACCAAGCTGCAAATCC
GGTATCTACTTACTATTATCCGCGGCGATCGTGCTGCTGATGGTCCTCAA
CCCGGCCAAGGGCCAATCGCCTCTCCACAAGGTATCGATTGTGGGCAGCG
GCAACTTCGGTTCCGCCGTGGCCCGCCTCTTAGGTCGCAATGTCCTGCAA
CACCCCAAACACTTTGAGACGGATATTCGTATGTGGGTCTTTGAGGAGGA
GCTACCCGACGGTCGGAAGTTGAGCGAGGTCATTAATGCTGAGCATGAAA
ACGTCAAGTACTTGCCTGGGGTCCGACTACCCTCCAATGTACGGGCAATC
CCTGATTTGGAAGTCGCGGTAAGAGATGCATCAATCATCATTATGGTCGT
GCCGCAACAACATTGTGCCACCTGTGAGTTCTGCATACTGGGAATTGGAT
AGAAGACTGGGGGTGAAGTGTCCAGGGGGGCACATGTCCCGATTGCCGGG
GATGTGTATGTCGCTCGCGTGCTTTGGCTTGTTGATTTTAAGATTAAAGA
GGTTCTCCCCATCTCTAATATTCTCCATTTACCATTTAGCCTATAGCAAC
TAGTGCTTGGATATCCCTTACTTTTAGTCGTCCTCTCTTCCCACCACCTA
TTCCCTCTTCCGCCCCGAATAGTGCTTCCTCGCCTCCGGTCCTGCATACG
GCAAGGTGCCGTAGCCGTCTCTTTGATCAAAGGGTTAGACTTCGATGACA
ATGGTCCCGTGCTTATCACTGACTTAATTCGGAAGGGCCTGGGCGGAGAT
GTCGAAGTTTGCGTCTTGATGGGCGCCAACGTGGCCGACGAAGTGGCTCG
CGATGAGTTTTGCGAGGCCACAGTCGGGTGTCGTGATACGACCGGGGCAG
GTATATTGGTACAGCGGCTATTCGATTGCCCGAGATTTCGAGTGGAGGTG
GCGCCTGACCCTATGGGCGTCGAGCTGTGCGGAGCCCTGAAAAATGTGGT
GGCCCTTGGGGCGGGCTTCTGCGATGGGCTGGGCTGGGGGGGGAATACGA
AGGTATGTTGTTTTCGTGCGTGCTTAAATGCCGGTATTTGATTATTGTTA
CAGGTTGATGTTAGTGCTGACCGTCGCTTCATCCCGTGCTTTCCATTCAT
TCGTCGCTCGTTTCCTCTTTTGGTCATGCCCTCATTCCTTCTTTCCGTAG
GCAGCTGTCATTCGCCGAGGCCTCCTAGAAATGCGTCGGCTCTGCAAACT
CCTTGATCCCCATGTTCGCGATGCCACGTTCTTCGAAAGCTGTGGTGTGG
CCGATCTTATTACCACCTGCTATGGCGGGCGGAACAGGAAGTGTGCCGAG
CGTTTCGCCCGGGCAGACGGAAACATGTCGTGGGACGACATCGAGAAGGA
GCAATTGGGGGGTCAACACTTGCAAGGGACTAAGACAGCGGCCAATCTCC
ACAGTCTACTAGAGCGAAAGAGGGTAGTGGGTGATTTTCCTTTGTTTTCC
ACAGTGTACCAAATTGCATTTCGAGGGCGACATCCAAGAACTTTGGTAAA
TGACCTGTGATGTTTCTCGTAACGGGGACACCAAAATCTCTAGAATGAGT
CGCCAGATGTGCCCCATAAGATGTTGACAATAGTAATTAAGCAAGATAAG
GTATTTACAAATGATACAGCAATATTTTAAAACGTAACGATCTGGTGGCA
AGTGCATGGTAGC
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Coding sequence (CDS) from alignment at chr1:1254643..1257055+

>NO01G04750.2 ID=NO01G04750.2|Name=NO01G04750.2|organism=Nannochloropsis oceanica|type=CDS|length=840bp|location=Sequence derived from alignment at chr1:1254643..1257055+ (Nannochloropsis oceanica)
ATGACCCAACCACCCAGCACCCTTGGCCATCTACCAAGCTGCAAATCCGG
TATCTACTTACTATTATCCGCGGCGATCGTGCTGCTGATGGTCCTCAACC
CGGCCAAGGGCCAATCGCCTCTCCACAAGGTATCGATTGTGGGCAGCGGC
AACTTCGGTTCCGCCGTGGCCCGCCTCTTAGGTCGCAATGTCCTGCAACA
CCCCAAACACTTTGAGACGGATATTCGTATGTGGGTCTTTGAGGAGGAGC
TACCCGACGGTCGGAAGTTGAGCGAGGTCATTAATGCTGAGCATGAAAAC
GTCAAGTACTTGCCTGGGGTCCGACTACCCTCCAATGTACGGGCAATCCC
TGATTTGGAAGTCGCGGTAAGAGATGCATCAATCATCATTATGGTCGTGC
CGCAACAACATTGTGCCACCTTGCTTCCTCGCCTCCGGTCCTGCATACGG
CAAGGTGCCGTAGCCGTCTCTTTGATCAAAGGGTTAGACTTCGATGACAA
TGGTCCCGTGCTTATCACTGACTTAATTCGGAAGGGCCTGGGCGGAGATG
TCGAAGTTTGCGTCTTGATGGGCGCCAACGTGGCCGACGAAGTGGCTCGC
GATGAGTTTTGCGAGGCCACAGTCGGGTGTCGTGATACGACCGGGGCAGG
TATATTGGTACAGCGGCTATTCGATTGCCCGAGATTTCGAGTGGAGGTGG
CGCCTGACCCTATGGGCGTCGAGCTGTGCGGAGCCCTGAAAAATGTGGTG
GCCCTTGGGGCGGGCTTCTGCGATGGGCTGGGCTGGGGGGGGAATACGAA
GGTATGTTGTTTTCGTGCGTGCTTAAATGCCGGTATTTGA
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Synonyms
Publications