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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:1240155..1243181 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G04700.1 vs.
Match: EWM29396.1 (cation efflux protein [Nannochloropsis gaditana]) HSP 1 Score: 899.4 bits (2323), Expect = 6.500e-258 Identity = 500/667 (74.96%), Postives = 558/667 (83.66%), Query Frame = 0
Query: 8 QSLTRCCRRPCSNVFL-VLGMAASVSTAFR------------LPTAPLFASLSASGKCKDSISDGLLMAALPARRQRCPSRTSLSMHMAPSHGLSGDASHFHGHDE-HDHDHPHPPAK--VGLKGLVSYLITVLQKKKQTIFGVLLGAIAVVAVRSYKGLRKFSSADVGILGLVATFLLAVESTKSYLTALRENLSSLAAGWRAHRSLQLLQSDRPLAAGGPAVSILRAGAKEADRVTWLGIYANLALFAIKASAGVVGRSAAMVADAGHTLSDLVSDMVTLWAVRMSALPPDDDHPYGHGRFEAVGSLGVSALLLLTAWHIAAHAYDKLQCTLLLPSLGPFPFVS-SFPAVISSVPWMQGLFARGGQMAST----CAAAPSALAVGAALASIVVKELLYQVTASVGLKHNSQVLLANAWHHRSDAISSVMALGGIVAARAGLAALDPVAGILVTAMIGLTGMQIFLDSMNQLTDTVESDSIPQIHRVAATVEGVRETSNVRARRMGPQLLVDLRILVDSEISASAAQQVADQVRWRIRRDFPNVSEVLVSTKTEPLPCPLANELRQPSEIEADVRALLGPEWARQEPLVSAVRKVVVHYTSMAPTVDVLLQIDPELSVREAGEVARRVKVLVEGVKDVTRAEVHMDLTSTGSPATAVLHSPGNGGE 654
Q +TR RRP F+ VLGM ASV+TA++ +P PL AS S +G S +A LP +Q S +L MH+ P H HGH+ H H HPP G++G V Y+I+VL++KKQTI GVLLGA+AVVAVRSY+G+R+FS ADVG+LGL+ATF+LAVESTKSYL LREN++ +AA WRAHRSL+LL S+RPLA GGPAVS L AGA E+DRVTWLGIYANL LFAIKA+AGV+GRSAAMVADAGHTLSDLVSDMVTLWAVRMSALPPDDDHPYGHGRFEAVGSLGVSALLLLTAWHIAAHAYDKLQCTL LPSLGP PF S S A+ SSVPWMQGL ARGG MA++ C AAPSALAV AA ASIVVKELLYQ+TASVG+KHNSQV+LANAWHHRSDAISS+MALGGIVAARAGLAALDP+AGILVTAMIGLTGMQIFLDSMNQLTDTVESD+IP I RVAA+VEGVR+TS+VRARRMGPQLLVDLRILVDS+ISASAAQQVADQVRWR+RRDFPNVSEVLV T TEPLPCPLA ELRQPS+IEADVRA LGP+WA+QEPLV AVRKV+VHY SMAPTVDVLLQIDP+LSVREAGEVARRV+ L+EG+KDVT+AEVH+DLTSTGSPATAVLHSP G+
Sbjct: 52 QDVTRRRRRPHWGGFVFVLGMTASVATAWQPLSMTKSQGLHAMPFGPLSAS-SFTGVRHQSAFPSASIAILPMTKQYSRS-CALKMHIGP---------HSHGHEPPHQHPDGHPPLAHMTGVRGFVLYIISVLKQKKQTIAGVLLGAVAVVAVRSYQGVRRFSGADVGMLGLIATFVLAVESTKSYLNTLRENIAQIAAAWRAHRSLRLLHSERPLATGGPAVSQLAAGAAESDRVTWLGIYANLGLFAIKATAGVLGRSAAMVADAGHTLSDLVSDMVTLWAVRMSALPPDDDHPYGHGRFEAVGSLGVSALLLLTAWHIAAHAYDKLQCTLALPSLGPLPFSSFSLSALRSSVPWMQGLLARGGHMAASVGASCEAAPSALAVVAATASIVVKELLYQITASVGIKHNSQVVLANAWHHRSDAISSIMALGGIVAARAGLAALDPIAGILVTAMIGLTGMQIFLDSMNQLTDTVESDAIPGIRRVAASVEGVRDTSDVRARRMGPQLLVDLRILVDSQISASAAQQVADQVRWRVRRDFPNVSEVLVHTVTEPLPCPLAMELRQPSDIEADVRAALGPDWAQQEPLVLAVRKVMVHYVSMAPTVDVLLQIDPDLSVREAGEVARRVQKLLEGIKDVTKAEVHLDLTSTGSPATAVLHSPSPTGD 707
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G04700.1 ID=NO01G04700.1|Name=NO01G04700.1|organism=Nannochloropsis oceanica|type=mRNA|length=2397bp CAGGCATATTCTTAGTCCCATGACCCACTGATTTGACAAGGGAACAAGAC GAAGACGATCCGTTGTCGACCCGTCCTGCAACTAGAAGCGACAACCGCAG CAAACCATGCCTCCACGGCCACATGAGCAAAGCTTGACAAGGTGCTGTCG CCGGCCATGCTCGAACGTTTTCCTGGTGCTTGGCATGGCCGCTTCAGTTT CTACGGCGTTCAGACTGCCTACCGCACCCTTGTTTGCCTCCCTCTCAGCC TCAGGCAAGTGTAAGGATTCGATAAGTGATGGGCTTCTCATGGCCGCTCT CCCAGCAAGGCGGCAGAGGTGTCCCTCGCGTACTTCACTCTCTATGCACA TGGCGCCTAGCCACGGCCTGTCAGGCGACGCCTCCCACTTTCACGGCCAC GACGAGCATGACCACGATCACCCCCACCCCCCAGCCAAAGTCGGCTTGAA AGGCCTGGTTTCCTACCTAATCACGGTCCTGCAAAAAAAGAAACAAACCA TTTTCGGCGTCCTCCTGGGGGCCATTGCCGTGGTCGCTGTCCGGTCCTAC AAAGGCTTGAGGAAATTCTCAAGCGCCGACGTAGGTATCCTTGGGCTAGT AGCTACTTTCCTTCTCGCTGTCGAAAGCACCAAGTCTTACCTAACAGCCC TCCGAGAAAACCTTTCTAGTCTTGCAGCCGGCTGGCGGGCGCACCGTTCC CTCCAGCTCTTGCAGAGCGACCGCCCCTTGGCTGCAGGTGGCCCCGCCGT GTCTATTTTGAGAGCAGGCGCGAAGGAGGCAGATAGGGTTACGTGGTTGG GAATATATGCGAATTTGGCATTGTTTGCGATCAAGGCATCGGCCGGGGTG GTGGGTCGGAGTGCAGCCATGGTAGCAGATGCAGGGCACACACTGTCAGA TCTGGTGTCGGACATGGTGACCCTCTGGGCAGTGCGTATGAGTGCCTTGC CTCCTGATGATGATCACCCCTACGGACATGGACGTTTTGAAGCGGTGGGT TCATTAGGAGTCTCGGCGCTGCTTCTCCTAACGGCGTGGCATATTGCTGC GCATGCCTATGACAAATTACAATGCACCCTCCTTCTCCCTTCTCTCGGGC CCTTCCCCTTCGTGTCGAGCTTCCCAGCGGTCATATCATCTGTGCCGTGG ATGCAGGGTTTATTTGCAAGGGGAGGACAGATGGCATCGACGTGTGCGGC GGCTCCGTCGGCGCTTGCGGTGGGTGCGGCGTTGGCGTCGATTGTAGTGA AAGAGTTACTGTATCAGGTGACGGCTAGCGTAGGTCTGAAGCATAACAGC CAGGTGTTGCTGGCGAATGCGTGGCACCATCGTTCGGATGCCATTTCATC GGTAATGGCCTTGGGAGGCATCGTGGCGGCAAGGGCGGGGCTGGCAGCAC TGGACCCGGTGGCGGGCATCCTGGTCACTGCCATGATCGGCCTGACGGGC ATGCAAATTTTCCTTGACAGCATGAACCAACTTACTGACACGGTCGAAAG TGACTCCATCCCTCAAATCCACCGCGTTGCCGCCACTGTTGAAGGGGTAC GAGAAACATCCAATGTCCGCGCACGACGCATGGGGCCCCAACTCCTCGTG GACCTGCGTATTTTGGTGGACAGTGAGATATCGGCGAGTGCGGCACAGCA AGTAGCAGACCAAGTCCGTTGGAGGATCCGACGGGATTTCCCCAACGTCA GCGAAGTGTTGGTGAGCACCAAAACTGAGCCCTTGCCTTGTCCGCTGGCG AATGAGCTGAGACAACCCTCAGAGATTGAGGCAGACGTTCGGGCGTTGTT GGGCCCGGAATGGGCGAGACAAGAGCCGTTGGTGTCGGCGGTGAGGAAGG TTGTCGTTCACTATACATCGATGGCGCCTACGGTCGATGTCTTATTGCAG ATTGACCCGGAATTGAGTGTGAGAGAGGCGGGGGAGGTGGCCCGGAGGGT GAAGGTGTTGGTGGAGGGAGTTAAGGATGTGACGAGGGCGGAGGTTCACA TGGATTTGACTAGTACAGGGTCGCCGGCGACGGCGGTTTTGCATTCGCCC GGGAATGGTGGGGAAGGCGGAAGATGAGGAGAGGAAGAGCAGTAGAATGT AGGTGTATTGCTGTGATGTTCGTATGTATGAGGTTATTCCCGTGTTTGTG TGTGTGATTGTGGTGGCAGTGGCAGATGTTTTGGTAGCGGTAGTGTCTAT TTTGTCGATGTACAATTCGCCCTTCGTGAGGGTTCAAGTAAAAAACATGA GGGGCGCACAAGGTTAATTGTAGGCTGATGTCTCGATTGTGGTTGTGGTG GTGTGCGTGGGGGGAAAAACGAAAGGAAAAAAAACAAATGGAAAAGTGTA ACGGAAAGAAGACGAAAAGCGAAGAGACATGCATGCATGCACAGCCA back to topprotein sequence of NO01G04700.1 >NO01G04700.1-protein ID=NO01G04700.1-protein|Name=NO01G04700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=657bp MPPRPHEQSLTRCCRRPCSNVFLVLGMAASVSTAFRLPTAPLFASLSASG KCKDSISDGLLMAALPARRQRCPSRTSLSMHMAPSHGLSGDASHFHGHDE HDHDHPHPPAKVGLKGLVSYLITVLQKKKQTIFGVLLGAIAVVAVRSYKG LRKFSSADVGILGLVATFLLAVESTKSYLTALRENLSSLAAGWRAHRSLQ LLQSDRPLAAGGPAVSILRAGAKEADRVTWLGIYANLALFAIKASAGVVG RSAAMVADAGHTLSDLVSDMVTLWAVRMSALPPDDDHPYGHGRFEAVGSL GVSALLLLTAWHIAAHAYDKLQCTLLLPSLGPFPFVSSFPAVISSVPWMQ GLFARGGQMASTCAAAPSALAVGAALASIVVKELLYQVTASVGLKHNSQV LLANAWHHRSDAISSVMALGGIVAARAGLAALDPVAGILVTAMIGLTGMQ IFLDSMNQLTDTVESDSIPQIHRVAATVEGVRETSNVRARRMGPQLLVDL RILVDSEISASAAQQVADQVRWRIRRDFPNVSEVLVSTKTEPLPCPLANE LRQPSEIEADVRALLGPEWARQEPLVSAVRKVVVHYTSMAPTVDVLLQID PELSVREAGEVARRVKVLVEGVKDVTRAEVHMDLTSTGSPATAVLHSPGN GGEGGR* back to topmRNA from alignment at chr1:1240155..1243181+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G04700.1 ID=NO01G04700.1|Name=NO01G04700.1|organism=Nannochloropsis oceanica|type=mRNA|length=3027bp|location=Sequence derived from alignment at chr1:1240155..1243181+ (Nannochloropsis oceanica) CAGGCATATTCTTAGTCCCATGACCCACTGATTTGACAAGGGAACAAGAC
GAAGACGATCCGTTGTCGACCCGTCCTGCAACTAGAAGCGACAACCGCAG
CAAACCATGCCTCCACGGCCACATGAGCAAAGCTTGACAAGGTGCTGTCG
CCGGCCATGCTCGAACGTTTTCCTGGTGCTTGGCATGGCCGCTTCAGTTT
CTACGGCGTTCAGACTGCCTACCGCACCCTTGTTTGCCTCCCTCTCAGCC
TCAGGTAAGTGTACACGTAGAAGTGCAGACAGACCTCTATTTTGTCGCGT
GATGTTGCCTTTTTTCTAAGTCTTTTAACTCCTGCATCGCTTGCTTGATT
GCAGTGGCAGGTATCCCTGGTGGTGGGTCAGAGTGGTGCTTCTGTGTAAG
AGATCTCACCTCATTCACGAGCACGAGGACATCTTTTGTGCAGCACAAGT
AGGTGAAGGCGTTCTAACCCTCAACCCCTTCACCCCAAAAGCAGGCAAGT
GTAAGGATTCGATAAGTGATGGGCTTCTCATGGCCGCTCTCCCAGCAAGG
CGGCAGAGGTGTCCCTCGCGTACTTCACTCTCTATGCACATGGCGCCTAG
CCACGGCCTGTCAGGCGACGCCTCCCACTTTCACGGCCACGACGAGCATG
ACCACGATCACCCCCACCCCCCAGCCAAAGTCGGCTTGAAAGGCCTGGTT
TCCTACCTAATCACGGTCCTGCAAAAAAAGAAACAAACCATTTTCGGCGT
CCTCCTGGGGGCCATTGCCGTGGTCGCTGTCCGGTCCTACAAAGGCTTGA
GGAAATTCTCAAGCGCCGACGTAGGTATCCTTGGGCTAGTAGCTACTTTC
CTTCTCGCTGTCGAAAGCACCAAGTCTTACCTAACAGCCCTCCGAGAAAA
CCTTTCTAGTCTTGCAGCCGGCTGGCGGGCGCACCGTTCCCTCCAGCTCT
TGCAGAGCGACCGCCCCTTGGCTGCAGGTGGCCCCGCCGTGTCTATTTTG
AGAGCAGGCGCGAAGGAGGCAGATAGGGTTACGTGGTTGGGAATATATGC
GAATTTGGCATTGTTTGCGATCAAGGCATCGGCCGGGGTGGTGGGTCGGA
GTGCAGCCATGGTAGCAGATGCAGGGCACACACTGTCAGATCTGGTGTCG
GACATGGTGACCCTCTGGGCAGTGCGTATGAGTGCCTTGCCTCCTGATGA
TGATCACCCCTACGGACATGGACGTTTTGAAGCGGTGGGTTCATTAGGAG
TCTCGGCGCTGCTTCTCCTAACGGCGTGGCATATTGCTGCGCATGCCTAT
GACAAATTACAATGCACCCTCCTTCTCCCTTCTCTCGGGCCCTTCCCCTT
CGTGTCGAGCTTCCCAGCGGTCATATCATCTGTGCCGTGGATGCAGGGTT
TATTTGCAAGGGGAGGACAGATGGCATCGACGTGTGCGGCGGCTCCGTCG
GCGCTTGCGGTGGGTGCGGCGTTGGCGTCGATTGTAGTGAAAGAGTAAGT
CGGAGGGGAGGGAGGAAAGAGTAAGTCGGAGGGGAGGGAGGGAGGGAAAG
AGCGCCGGAGCGGAGGAAGTGGATGCGCGTTGTATACTCTGTTCTGGTTG
TTGGACGTGAAATATACCAATCAGATATTTCATTTCATTTCCTTGCCCTT
TCATTCTCCGCTTTTCTTTTCTTGCTTCCTCCCTCTTGCCCTCCTCCTTC
AGGTTACTGTATCAGGTGACGGCTAGCGTAGGTCTGAAGCATAACAGCCA
GGTGTTGCTGGCGAATGCGTGGCACCATCGTTCGGATGCCATTTCATCGG
TAATGGCCTTGGGAGGCATCGTGGCGGCAAGGGCGGGGCTGGCAGCACTG
GACCCGGTGGCGGGTAGGTTGGAAGGAGGGAGGGAGGGTGGGAGAGGCTG
TGAGGGGAGGTGTACGTGGGAAAGGCGGTTTGTTGTTTTCTTACCGGAGC
CATACGCTGCCACTTCACCTTCGCAGTCACTCATCACTTATTTGCTTTTC
CTTTTTCCTTATCCCCTCCCCCACCCCATTTCCGCTTCCCCTCAGGCATC
CTGGTCACTGCCATGATCGGCCTGACGGGCATGCAAATTTTCCTTGACAG
CATGAACCAACTTACTGACACGGTCGAAAGTGACTCCATCCCTCAAATCC
ACCGCGTTGCCGCCACTGTTGAAGGGGTACGAGAAACATCCAATGTCCGC
GCACGACGCATGGGGCCCCAACTCCTCGTGGACCTGCGTATTTTGGTGGA
CAGTGAGATATCGGCGAGTGCGGCACAGCAAGTAGCAGACCAAGTCCGTT
GGAGGATCCGACGGGATTTCCCCAACGTCAGCGAAGTGTTGGTGAGCACC
AAAACTGAGCCCTTGCCTTGTCCGCTGGCGAATGAGCTGAGACAACCCTC
AGAGATTGAGGCAGACGTTCGGGCGTTGTTGGGCCCGGAATGGGCGAGAC
AAGAGCCGTTGGTGTCGGCGGTGAGGAAGGTTGTCGTTCACTATACATCG
ATGGCGCCTACGGTCGATGTCTTATTGCAGATTGACCCGGAATTGAGTGT
GAGAGAGGCGGGGGAGGTGGCCCGGAGGGTGAAGGTGTTGGTGGAGGGAG
TTAAGGATGTGACGAGGGCGGAGGTTCACATGGATTTGACTAGTACAGGG
TCGCCGGCGACGGCGGTTTTGCATTCGCCCGGGAATGGTGGGGAAGGCGG
AAGATGAGGAGAGGAAGAGCAGTAGAATGTAGGTGTATTGCTGTGATGTT
CGTATGTATGAGGTTATTCCCGTGTTTGTGTGTGTGATTGTGGTGGCAGT
GGCAGATGTTTTGGTAGCGGTAGTGTCTATTTTGTCGATGTACAATTCGC
CCTTCGTGAGGGTTCAAGTAAAAAACATGAGGGGCGCACAAGGTTAATTG
TAGGCTGATGTCTCGATTGTGGTTGTGGTGGTGTGCGTGGGGGGAAAAAC
GAAAGGAAAAAAAACAAATGGAAAAGTGTAACGGAAAGAAGACGAAAAGC
GAAGAGACATGCATGCATGCACAGCCA back to topCoding sequence (CDS) from alignment at chr1:1240155..1243181+ >NO01G04700.1 ID=NO01G04700.1|Name=NO01G04700.1|organism=Nannochloropsis oceanica|type=CDS|length=1971bp|location=Sequence derived from alignment at chr1:1240155..1243181+ (Nannochloropsis oceanica) ATGCCTCCACGGCCACATGAGCAAAGCTTGACAAGGTGCTGTCGCCGGCC ATGCTCGAACGTTTTCCTGGTGCTTGGCATGGCCGCTTCAGTTTCTACGG CGTTCAGACTGCCTACCGCACCCTTGTTTGCCTCCCTCTCAGCCTCAGGC AAGTGTAAGGATTCGATAAGTGATGGGCTTCTCATGGCCGCTCTCCCAGC AAGGCGGCAGAGGTGTCCCTCGCGTACTTCACTCTCTATGCACATGGCGC CTAGCCACGGCCTGTCAGGCGACGCCTCCCACTTTCACGGCCACGACGAG CATGACCACGATCACCCCCACCCCCCAGCCAAAGTCGGCTTGAAAGGCCT GGTTTCCTACCTAATCACGGTCCTGCAAAAAAAGAAACAAACCATTTTCG GCGTCCTCCTGGGGGCCATTGCCGTGGTCGCTGTCCGGTCCTACAAAGGC TTGAGGAAATTCTCAAGCGCCGACGTAGGTATCCTTGGGCTAGTAGCTAC TTTCCTTCTCGCTGTCGAAAGCACCAAGTCTTACCTAACAGCCCTCCGAG AAAACCTTTCTAGTCTTGCAGCCGGCTGGCGGGCGCACCGTTCCCTCCAG CTCTTGCAGAGCGACCGCCCCTTGGCTGCAGGTGGCCCCGCCGTGTCTAT TTTGAGAGCAGGCGCGAAGGAGGCAGATAGGGTTACGTGGTTGGGAATAT ATGCGAATTTGGCATTGTTTGCGATCAAGGCATCGGCCGGGGTGGTGGGT CGGAGTGCAGCCATGGTAGCAGATGCAGGGCACACACTGTCAGATCTGGT GTCGGACATGGTGACCCTCTGGGCAGTGCGTATGAGTGCCTTGCCTCCTG ATGATGATCACCCCTACGGACATGGACGTTTTGAAGCGGTGGGTTCATTA GGAGTCTCGGCGCTGCTTCTCCTAACGGCGTGGCATATTGCTGCGCATGC CTATGACAAATTACAATGCACCCTCCTTCTCCCTTCTCTCGGGCCCTTCC CCTTCGTGTCGAGCTTCCCAGCGGTCATATCATCTGTGCCGTGGATGCAG GGTTTATTTGCAAGGGGAGGACAGATGGCATCGACGTGTGCGGCGGCTCC GTCGGCGCTTGCGGTGGGTGCGGCGTTGGCGTCGATTGTAGTGAAAGAGT TACTGTATCAGGTGACGGCTAGCGTAGGTCTGAAGCATAACAGCCAGGTG TTGCTGGCGAATGCGTGGCACCATCGTTCGGATGCCATTTCATCGGTAAT GGCCTTGGGAGGCATCGTGGCGGCAAGGGCGGGGCTGGCAGCACTGGACC CGGTGGCGGGCATCCTGGTCACTGCCATGATCGGCCTGACGGGCATGCAA ATTTTCCTTGACAGCATGAACCAACTTACTGACACGGTCGAAAGTGACTC CATCCCTCAAATCCACCGCGTTGCCGCCACTGTTGAAGGGGTACGAGAAA CATCCAATGTCCGCGCACGACGCATGGGGCCCCAACTCCTCGTGGACCTG CGTATTTTGGTGGACAGTGAGATATCGGCGAGTGCGGCACAGCAAGTAGC AGACCAAGTCCGTTGGAGGATCCGACGGGATTTCCCCAACGTCAGCGAAG TGTTGGTGAGCACCAAAACTGAGCCCTTGCCTTGTCCGCTGGCGAATGAG CTGAGACAACCCTCAGAGATTGAGGCAGACGTTCGGGCGTTGTTGGGCCC GGAATGGGCGAGACAAGAGCCGTTGGTGTCGGCGGTGAGGAAGGTTGTCG TTCACTATACATCGATGGCGCCTACGGTCGATGTCTTATTGCAGATTGAC CCGGAATTGAGTGTGAGAGAGGCGGGGGAGGTGGCCCGGAGGGTGAAGGT GTTGGTGGAGGGAGTTAAGGATGTGACGAGGGCGGAGGTTCACATGGATT TGACTAGTACAGGGTCGCCGGCGACGGCGGTTTTGCATTCGCCCGGGAAT GGTGGGGAAGGCGGAAGATGA back to top
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