NO01G04690.1, NO01G04690.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G04690.1
Unique NameNO01G04690.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2183
Alignment locationchr1:1237641..1239823 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1237641..1239823 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G04690.1 vs.
Match: EWM29409.1 (hypothetical protein Naga_100042g14 [Nannochloropsis gaditana])

HSP 1 Score: 369.4 bits (947), Expect = 1.900e-98
Identity = 261/520 (50.19%), Postives = 321/520 (61.73%), Query Frame = 0 
Query:   12 NDMSTNCHDMKKSLYGDYEIV----SSFHPFHSSSSSSSSSSSDTDGAANGARSPSDHRIVRKKKHENVSRDRRDRENGDDSEREVEEEEEQEDEWLQGTPASKFRTNKGGSGGGGGGKKKKKGGKKKVGNRGGNGGGGIGATETLSSSTY---EIACSLPASIVGFLSEASRALSPEKRSKAKAALNHTRRSSSGCSSSSSVDETNSVMTSTAGAVG---AEGTEAAAAAAAAAAAAATTIQAKAKHKI---KIVQWGEVVVHTCRRKPSPDSVPAHGAWPLGLGAEDGHPPRLTTVDRFEVAKQEELERRLQELPKRLRKATAAGGGGLETRQFDYKSPGEKNPLFGPLDERRRKLVLIQALE----QGEGGKEE-------EGLCGSPRKMGMETSAYLNLYNAMEEQEEARSNELDELRASRKKIGCSCHHTSKAPDKLSLKKLKEELHRRHLSAPGTDKAILVEQLKEVLKDERLCSAEGGPVECECLTAGVPCHADVCGCCAGKKPGRGGGGGG 508
            ND+S +C  ++K++  D +      SS     SS SSS S SS+++     AR        + +K       RR+ + G      VEEEE++EDEW+QGT AS+      G   G G KKK +  +KK G + G GG G+      SSS     E+A SLPA         SR L             H R  SS   S S VD +   + S A       A G+ A    +AAA++++++ +  AKHK    K V+WG+VVV    R PSP SVP  GAWPLGLGAEDG PP   +VD +E  +Q+ELERR QELPKRLRK    G GGLE+RQ+DYK+P E+NPLFGP++ERRRKL L+QALE    +G GG +E          CGSPRK  +  S YL+ Y A EEQEEARS ELDELRASRK+IGCSCHHT+KAP+KLSLKKLKEELHRRHLSAPGTDKA+L+E LKE L+ E+LCS   GP  CEC  AGVPCHADVCGCCAGK+ G+GGG GG
Sbjct:    3 NDVSEDCA-LRKAMLADEDRFPSSPSSVPSTPSSPSSSYSLSSESEHETEDARRERWDANRKTRKAHVFREARRECDEG------VEEEEKEEDEWIQGTVASRT-----GGRHGSGSKKKNRNSRKK-GPKLGRGGAGVAIEHGCSSSQTKEEELASSLPACPADI--PTSRLLHTGPLHPLPRIGQHGRNRSS--DSCSLVDRSGKGVLSAAALAATATANGSIAVPLPSAAASSSSSSTEVAAKHKAAGKKRVEWGQVVVRRYFRMPSPHSVPVRGAWPLGLGAEDGQPPSQVSVDAYERQRQKELERRWQELPKRLRKTVGCGEGGLESRQYDYKAPEERNPLFGPMEERRRKLTLLQALESMGEEGSGGGKEVSSDSLSSSPCGSPRKTTLAASLYLSRYQAWEEQEEARSRELDELRASRKQIGCSCHHTAKAPEKLSLKKLKEELHRRHLSAPGTDKAMLLEMLKEALQKEKLCSGGEGPDACECFIAGVPCHADVCGCCAGKR-GKGGGSGG 504
The following BLAST results are available for this feature:
BLAST of NO01G04690.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29409.11.900e-9850.19hypothetical protein Naga_100042g14 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G04690NO01G04690Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G04690.1NO01G04690.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G04690.1.cds1NO01G04690.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G04690.1 ID=NO01G04690.1|Name=NO01G04690.1|organism=Nannochloropsis oceanica|type=mRNA|length=2183bp
CAGGCACGCGGGCTGCGCGACCGAACCAAGGCCTGGTCACCAAGCATCAG
CAACCCCCGACACCACGCCTCAAGCCAGCGCCCACTCTCGCCACCTCATC
CTCCGCGCACCAAAACCAGTACAAGCGCCACCTGGAGTACTCTGTGAAGA
TATCAAGGCTACTGTTCGGCTGCTCCAGGCCTAAGCCGGGTGGACTCTGA
GCTTTCATGTGGACTAGCGCTAAGTCCTTCCTCACATCCGTGTTACCTCC
CCGACTGTCGCGGTCTGTGAGCCTTTCCAGGAGATGAAAGAAGCTGTCGG
TGCCCACGATAAGGACAACGACATGTCAACAAATTGCCACGACATGAAGA
AATCTCTGTATGGCGATTACGAAATCGTCTCATCCTTCCACCCCTTCCAC
TCCTCGTCGTCCTCATCCTCTTCCTCCTCCTCGGATACAGACGGCGCAGC
CAATGGCGCTCGATCCCCGTCAGATCATCGAATCGTGCGAAAAAAAAAGC
ACGAAAACGTGTCACGCGATAGAAGAGATCGTGAGAATGGGGACGATAGC
GAGCGTGAGGTTGAGGAGGAGGAGGAGCAGGAGGACGAATGGCTGCAAGG
AACGCCGGCGAGCAAGTTTCGTACCAACAAGGGTGGAAGTGGAGGAGGAG
GAGGAGGGAAGAAGAAGAAAAAGGGTGGCAAGAAGAAGGTTGGGAATCGT
GGTGGGAACGGAGGGGGGGGGATTGGAGCCACGGAAACTCTCTCTTCATC
CACGTATGAGATTGCCTGCTCCTTGCCCGCCTCCATTGTTGGTTTTCTGA
GCGAGGCCTCCAGAGCCTTGTCGCCTGAGAAGAGATCCAAGGCCAAAGCC
GCCTTGAACCATACAAGGAGAAGCAGCAGTGGGTGCAGCAGCAGCAGTAG
TGTTGACGAGACGAACAGCGTCATGACTTCGACCGCGGGAGCCGTGGGGG
CAGAAGGAACAGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCGACGACAATTCAAGCCAAGGCAAAGCATAAAATTAAAATCGTGCAGTG
GGGAGAGGTCGTGGTGCATACGTGCCGCCGCAAGCCCTCCCCTGATTCCG
TTCCTGCCCATGGCGCTTGGCCTTTGGGTCTAGGTGCAGAAGACGGGCAT
CCACCACGATTAACGACGGTGGATAGATTTGAGGTCGCGAAGCAGGAAGA
GTTGGAGAGGCGGTTACAGGAGTTACCAAAACGGTTGCGGAAGGCAACGG
CTGCCGGGGGAGGAGGGTTGGAGACGAGGCAGTTTGACTATAAGAGCCCG
GGGGAGAAGAATCCCTTATTTGGTCCCTTGGATGAACGGAGGCGGAAGTT
GGTTCTGATCCAGGCATTGGAGCAGGGGGAGGGCGGAAAGGAGGAAGAGG
GGTTGTGTGGGTCTCCCAGGAAGATGGGCATGGAGACAAGTGCCTATTTG
AATCTGTACAATGCCATGGAAGAGCAGGAGGAGGCTCGAAGCAATGAGTT
GGACGAATTACGTGCCTCGAGGAAAAAGATTGGGTGTTCGTGTCATCATA
CCAGCAAGGCGCCAGACAAACTGAGCTTGAAGAAGTTGAAGGAAGAACTG
CATCGCAGGCACCTTAGTGCCCCAGGCACGGATAAGGCTATACTAGTCGA
GCAATTAAAGGAGGTCTTAAAGGACGAACGGCTCTGTAGTGCGGAAGGGG
GGCCTGTCGAATGTGAATGTTTAACAGCAGGTGTTCCTTGCCATGCTGAT
GTTTGTGGGTGTTGCGCGGGGAAGAAGCCTGGAAGGGGGGGAGGAGGGGG
GGGGGTAGGGCGTGTGAGAATCCCTCGGGGAATTTCTTGTACCAGGAGGC
GAGTGTGAGGGGACATCGTATCCGTTTTTTGACGGCCACGCCGATGGGAC
AACGACAGCGGAGTTGCTCGATTTAGGATGAGCAGGTGGCAGGGGTTGGA
GAGAGGTAGGGATGCGTGTGGCTGTGTAAAGGAATGCCAGTATCTCGGCC
TTGGTCCGTTGGTGGAGATAGTATTAACATGGATGATGAACACGAATGGG
GGTAGTAAATGAAGACGGTAACGTGGAGAGAAATCGGTGCGACGAGCATA
AAAGGGACAGCTATGACCCACAACACACAGCCCGGCCAGCAATGCACAAC
TATCAAATTAAGAGCACGGAATATACTTTGAAA
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protein sequence of NO01G04690.1

>NO01G04690.1-protein ID=NO01G04690.1-protein|Name=NO01G04690.1|organism=Nannochloropsis oceanica|type=polypeptide|length=525bp
MKEAVGAHDKDNDMSTNCHDMKKSLYGDYEIVSSFHPFHSSSSSSSSSSS
DTDGAANGARSPSDHRIVRKKKHENVSRDRRDRENGDDSEREVEEEEEQE
DEWLQGTPASKFRTNKGGSGGGGGGKKKKKGGKKKVGNRGGNGGGGIGAT
ETLSSSTYEIACSLPASIVGFLSEASRALSPEKRSKAKAALNHTRRSSSG
CSSSSSVDETNSVMTSTAGAVGAEGTEAAAAAAAAAAAAATTIQAKAKHK
IKIVQWGEVVVHTCRRKPSPDSVPAHGAWPLGLGAEDGHPPRLTTVDRFE
VAKQEELERRLQELPKRLRKATAAGGGGLETRQFDYKSPGEKNPLFGPLD
ERRRKLVLIQALEQGEGGKEEEGLCGSPRKMGMETSAYLNLYNAMEEQEE
ARSNELDELRASRKKIGCSCHHTSKAPDKLSLKKLKEELHRRHLSAPGTD
KAILVEQLKEVLKDERLCSAEGGPVECECLTAGVPCHADVCGCCAGKKPG
RGGGGGGVGRVRIPRGISCTRRRV*
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mRNA from alignment at chr1:1237641..1239823-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G04690.1 ID=NO01G04690.1|Name=NO01G04690.1|organism=Nannochloropsis oceanica|type=mRNA|length=2183bp|location=Sequence derived from alignment at chr1:1237641..1239823- (Nannochloropsis oceanica)
CAGGCACGCGGGCTGCGCGACCGAACCAAGGCCTGGTCACCAAGCATCAG
CAACCCCCGACACCACGCCTCAAGCCAGCGCCCACTCTCGCCACCTCATC
CTCCGCGCACCAAAACCAGTACAAGCGCCACCTGGAGTACTCTGTGAAGA
TATCAAGGCTACTGTTCGGCTGCTCCAGGCCTAAGCCGGGTGGACTCTGA
GCTTTCATGTGGACTAGCGCTAAGTCCTTCCTCACATCCGTGTTACCTCC
CCGACTGTCGCGGTCTGTGAGCCTTTCCAGGAGATGAAAGAAGCTGTCGG
TGCCCACGATAAGGACAACGACATGTCAACAAATTGCCACGACATGAAGA
AATCTCTGTATGGCGATTACGAAATCGTCTCATCCTTCCACCCCTTCCAC
TCCTCGTCGTCCTCATCCTCTTCCTCCTCCTCGGATACAGACGGCGCAGC
CAATGGCGCTCGATCCCCGTCAGATCATCGAATCGTGCGAAAAAAAAAGC
ACGAAAACGTGTCACGCGATAGAAGAGATCGTGAGAATGGGGACGATAGC
GAGCGTGAGGTTGAGGAGGAGGAGGAGCAGGAGGACGAATGGCTGCAAGG
AACGCCGGCGAGCAAGTTTCGTACCAACAAGGGTGGAAGTGGAGGAGGAG
GAGGAGGGAAGAAGAAGAAAAAGGGTGGCAAGAAGAAGGTTGGGAATCGT
GGTGGGAACGGAGGGGGGGGGATTGGAGCCACGGAAACTCTCTCTTCATC
CACGTATGAGATTGCCTGCTCCTTGCCCGCCTCCATTGTTGGTTTTCTGA
GCGAGGCCTCCAGAGCCTTGTCGCCTGAGAAGAGATCCAAGGCCAAAGCC
GCCTTGAACCATACAAGGAGAAGCAGCAGTGGGTGCAGCAGCAGCAGTAG
TGTTGACGAGACGAACAGCGTCATGACTTCGACCGCGGGAGCCGTGGGGG
CAGAAGGAACAGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCGACGACAATTCAAGCCAAGGCAAAGCATAAAATTAAAATCGTGCAGTG
GGGAGAGGTCGTGGTGCATACGTGCCGCCGCAAGCCCTCCCCTGATTCCG
TTCCTGCCCATGGCGCTTGGCCTTTGGGTCTAGGTGCAGAAGACGGGCAT
CCACCACGATTAACGACGGTGGATAGATTTGAGGTCGCGAAGCAGGAAGA
GTTGGAGAGGCGGTTACAGGAGTTACCAAAACGGTTGCGGAAGGCAACGG
CTGCCGGGGGAGGAGGGTTGGAGACGAGGCAGTTTGACTATAAGAGCCCG
GGGGAGAAGAATCCCTTATTTGGTCCCTTGGATGAACGGAGGCGGAAGTT
GGTTCTGATCCAGGCATTGGAGCAGGGGGAGGGCGGAAAGGAGGAAGAGG
GGTTGTGTGGGTCTCCCAGGAAGATGGGCATGGAGACAAGTGCCTATTTG
AATCTGTACAATGCCATGGAAGAGCAGGAGGAGGCTCGAAGCAATGAGTT
GGACGAATTACGTGCCTCGAGGAAAAAGATTGGGTGTTCGTGTCATCATA
CCAGCAAGGCGCCAGACAAACTGAGCTTGAAGAAGTTGAAGGAAGAACTG
CATCGCAGGCACCTTAGTGCCCCAGGCACGGATAAGGCTATACTAGTCGA
GCAATTAAAGGAGGTCTTAAAGGACGAACGGCTCTGTAGTGCGGAAGGGG
GGCCTGTCGAATGTGAATGTTTAACAGCAGGTGTTCCTTGCCATGCTGAT
GTTTGTGGGTGTTGCGCGGGGAAGAAGCCTGGAAGGGGGGGAGGAGGGGG
GGGGGTAGGGCGTGTGAGAATCCCTCGGGGAATTTCTTGTACCAGGAGGC
GAGTGTGAGGGGACATCGTATCCGTTTTTTGACGGCCACGCCGATGGGAC
AACGACAGCGGAGTTGCTCGATTTAGGATGAGCAGGTGGCAGGGGTTGGA
GAGAGGTAGGGATGCGTGTGGCTGTGTAAAGGAATGCCAGTATCTCGGCC
TTGGTCCGTTGGTGGAGATAGTATTAACATGGATGATGAACACGAATGGG
GGTAGTAAATGAAGACGGTAACGTGGAGAGAAATCGGTGCGACGAGCATA
AAAGGGACAGCTATGACCCACAACACACAGCCCGGCCAGCAATGCACAAC
TATCAAATTAAGAGCACGGAATATACTTTGAAA
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Coding sequence (CDS) from alignment at chr1:1237641..1239823-

>NO01G04690.1 ID=NO01G04690.1|Name=NO01G04690.1|organism=Nannochloropsis oceanica|type=CDS|length=1575bp|location=Sequence derived from alignment at chr1:1237641..1239823- (Nannochloropsis oceanica)
ATGAAAGAAGCTGTCGGTGCCCACGATAAGGACAACGACATGTCAACAAA
TTGCCACGACATGAAGAAATCTCTGTATGGCGATTACGAAATCGTCTCAT
CCTTCCACCCCTTCCACTCCTCGTCGTCCTCATCCTCTTCCTCCTCCTCG
GATACAGACGGCGCAGCCAATGGCGCTCGATCCCCGTCAGATCATCGAAT
CGTGCGAAAAAAAAAGCACGAAAACGTGTCACGCGATAGAAGAGATCGTG
AGAATGGGGACGATAGCGAGCGTGAGGTTGAGGAGGAGGAGGAGCAGGAG
GACGAATGGCTGCAAGGAACGCCGGCGAGCAAGTTTCGTACCAACAAGGG
TGGAAGTGGAGGAGGAGGAGGAGGGAAGAAGAAGAAAAAGGGTGGCAAGA
AGAAGGTTGGGAATCGTGGTGGGAACGGAGGGGGGGGGATTGGAGCCACG
GAAACTCTCTCTTCATCCACGTATGAGATTGCCTGCTCCTTGCCCGCCTC
CATTGTTGGTTTTCTGAGCGAGGCCTCCAGAGCCTTGTCGCCTGAGAAGA
GATCCAAGGCCAAAGCCGCCTTGAACCATACAAGGAGAAGCAGCAGTGGG
TGCAGCAGCAGCAGTAGTGTTGACGAGACGAACAGCGTCATGACTTCGAC
CGCGGGAGCCGTGGGGGCAGAAGGAACAGAAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCGACGACAATTCAAGCCAAGGCAAAGCATAAA
ATTAAAATCGTGCAGTGGGGAGAGGTCGTGGTGCATACGTGCCGCCGCAA
GCCCTCCCCTGATTCCGTTCCTGCCCATGGCGCTTGGCCTTTGGGTCTAG
GTGCAGAAGACGGGCATCCACCACGATTAACGACGGTGGATAGATTTGAG
GTCGCGAAGCAGGAAGAGTTGGAGAGGCGGTTACAGGAGTTACCAAAACG
GTTGCGGAAGGCAACGGCTGCCGGGGGAGGAGGGTTGGAGACGAGGCAGT
TTGACTATAAGAGCCCGGGGGAGAAGAATCCCTTATTTGGTCCCTTGGAT
GAACGGAGGCGGAAGTTGGTTCTGATCCAGGCATTGGAGCAGGGGGAGGG
CGGAAAGGAGGAAGAGGGGTTGTGTGGGTCTCCCAGGAAGATGGGCATGG
AGACAAGTGCCTATTTGAATCTGTACAATGCCATGGAAGAGCAGGAGGAG
GCTCGAAGCAATGAGTTGGACGAATTACGTGCCTCGAGGAAAAAGATTGG
GTGTTCGTGTCATCATACCAGCAAGGCGCCAGACAAACTGAGCTTGAAGA
AGTTGAAGGAAGAACTGCATCGCAGGCACCTTAGTGCCCCAGGCACGGAT
AAGGCTATACTAGTCGAGCAATTAAAGGAGGTCTTAAAGGACGAACGGCT
CTGTAGTGCGGAAGGGGGGCCTGTCGAATGTGAATGTTTAACAGCAGGTG
TTCCTTGCCATGCTGATGTTTGTGGGTGTTGCGCGGGGAAGAAGCCTGGA
AGGGGGGGAGGAGGGGGGGGGGTAGGGCGTGTGAGAATCCCTCGGGGAAT
TTCTTGTACCAGGAGGCGAGTGTGA
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Synonyms
Publications