NO01G04680.2, NO01G04680.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G04680.2
Unique NameNO01G04680.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1715
Alignment locationchr1:1235383..1237623 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1235383..1237623 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO01G04680.2 vs.
Match: EWM29408.1 (ion channel [Nannochloropsis gaditana])

HSP 1 Score: 746.9 bits (1927), Expect = 4.200e-212
Identity = 386/516 (74.81%), Postives = 435/516 (84.30%), Query Frame = 0 
Query:    1 MGEEEPVLVKTAVHWKDEGNEFYKKGDYRAAIDAYSLAIAEAPDEPSFYGNRAAAHMMILAYESAIEDCDKAIALSPGMVKAYFRKGKALAILGKFDESIAAYRAGLQQDPNNAQGHSEKTEVETAVKALNKARDILQEARPSPNGGNGSSSSNAIARKRLFLQANTLLDVCLALAPSSFDAKLLKLECQVGLGQYDDAFNSSNHLLRLAPSLAPLLHLRATCLYRLGNLENSIKHSQQAVRSDPDNASYVALLKQVRSLDNKKKEGDTAFTHGQYQKAIQAWTEALAVDPTHKQICAKLYNNRATAYAKMRRHADAVSDCKQALALDPQYLKALKRKAESLFVLGGEENLEQCLRDYETAAGLAPEEEEREYARKMHQAKVALKRAKRKDYYRLLGLSSDATEDEIRKAYRKLALKHHPDRHTSSSEEEKAKAEKEFKNVAEAYEVLSDKEKKARYDSGVDIEDLDNPHAHGPSRGGGFGGMGG-GGIDPNILFQMFMQQQAGAGGGFGGRGRGG 516
            MG++E   VKTA  WKDEGNE YKKGDYRAAIDAYSLAIA +PDE SFYGNRAAAHMMILAYE+AI+DC+KA+ALSP MVKAYFRKGKALA LGKFDE++ AY  GLQQDPNNAQGH+EK EVE  +KA  KA ++LQE R   +    +  +     KR F++AN L+D CL+LA +S   +LLKLECQVGLGQY++AF  SNHLLRL+PSLAPLL+LRA CLY LGN E ++KH QQAVRSDPDN +YV+LLK+VR+LD KKKEGDT FT GQYQ AI AWTEALAVDP+ K + AK++NNRATAYAKMR+H +AV+DCK+ALALDPQYLKALKRKAESL+ LGGEENLEQCLRDYE AA LAP  EEREYARKMHQ KVALKRAKRKD YR+LGLS+DATEDEIRKAYRKLALKHHPDRHT+SSEE KA AEK FK+VAEAYEVLSDKEK++RYDSG D+EDLDNP A   S  GGFGG GG GGIDPN+LFQMFMQQQA  GGG GG GRGG
Sbjct:    1 MGDDEVSTVKTAAQWKDEGNELYKKGDYRAAIDAYSLAIAMSPDEASFYGNRAAAHMMILAYEAAIDDCNKALALSPNMVKAYFRKGKALATLGKFDEAMTAYHQGLQQDPNNAQGHAEKAEVEAVMKAGAKATELLQETRGPGSSTLQNGQNGGAVHKRNFVRANALVDQCLSLASASPQVRLLKLECQVGLGQYEEAFAGSNHLLRLSPSLAPLLYLRAVCLYHLGNFEGALKHLQQAVRSDPDNHAYVSLLKKVRALDAKKKEGDTCFTQGQYQPAIDAWTEALAVDPSQKAVNAKMFNNRATAYAKMRKHTEAVADCKRALALDPQYLKALKRKAESLYALGGEENLEQCLRDYEAAARLAPASEEREYARKMHQVKVALKRAKRKDLYRILGLSTDATEDEIRKAYRKLALKHHPDRHTNSSEEAKAAAEKAFKDVAEAYEVLSDKEKRSRYDSGTDVEDLDNPQAQAGSHAGGFGGFGGRGGIDPNVLFQMFMQQQA-MGGGRGGGGRGG 515
The following BLAST results are available for this feature:
BLAST of NO01G04680.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29408.14.200e-21274.81ion channel [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G04680NO01G04680Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G04680.2NO01G04680.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G04680.2.cds1NO01G04680.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G04680.2.cds2NO01G04680.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G04680.2.cds3NO01G04680.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G04680.2 ID=NO01G04680.2|Name=NO01G04680.2|organism=Nannochloropsis oceanica|type=mRNA|length=1715bp
AGACAGCCAAGCCTAGGTGACGCACACCCGCTCTGCCCTGATGGGGGAGG
AAGAACCTGTCTTGGTCAAGACGGCCGTGCACTGGAAAGACGAAGGTAAC
GAGTTTTACAAAAAAGGCGACTATCGGGCTGCCATCGACGCCTATAGCCT
GGCCATCGCCGAGGCTCCCGATGAGCCCTCATTCTACGGAAACCGAGCTG
CGGCGCACATGATGATCTTGGCCTATGAAAGCGCCATCGAGGACTGTGAT
AAAGCGATTGCATTGAGTCCAGGGATGGTCAAGGCGTACTTTCGGAAGGG
CAAAGCGTTGGCGATATTAGGCAAATTCGACGAAAGCATAGCTGCCTACC
GCGCGGGGCTCCAACAAGATCCGAACAACGCGCAGGGCCACTCCGAGAAA
ACCGAGGTGGAAACAGCCGTCAAAGCCCTGAACAAAGCACGTGACATACT
TCAAGAGGCCCGACCGTCGCCCAATGGGGGAAATGGCAGCAGCAGCAGCA
ACGCGATCGCGAGGAAACGCCTCTTTCTGCAAGCGAACACCCTGCTGGAC
GTATGTCTCGCCCTCGCGCCTTCCTCCTTTGATGCCAAGCTCCTCAAGCT
CGAATGTCAAGTGGGCCTTGGCCAGTACGACGACGCCTTCAACAGCAGCA
ACCACCTGCTCCGCCTCGCCCCCTCCCTGGCCCCTCTCCTGCACCTCCGG
GCCACATGCCTCTACCGACTAGGCAACCTCGAAAACTCTATCAAGCATTC
CCAACAAGCCGTCCGCTCCGACCCGGATAATGCCTCCTACGTGGCACTCC
TTAAACAAGTGCGCTCGTTAGACAACAAAAAAAAAGAAGGCGACACCGCT
TTCACGCACGGCCAGTACCAAAAAGCGATTCAGGCATGGACGGAGGCCCT
TGCCGTAGACCCAACGCACAAGCAAATATGTGCCAAGCTGTACAATAACC
GTGCCACCGCCTACGCTAAGATGCGAAGACACGCCGATGCCGTCTCGGAC
TGCAAGCAGGCTTTGGCTCTGGATCCGCAATACCTTAAAGCCCTCAAAAG
AAAAGCCGAGAGCCTGTTTGTTCTGGGGGGGGAGGAGAATTTGGAGCAGT
GCTTACGTGACTACGAGACAGCGGCGGGGTTGGCGCCCGAGGAGGAGGAG
AGAGAATATGCGCGGAAGATGCACCAGGCCAAGGTGGCGCTGAAGAGGGC
AAAGAGGAAAGATTACTATCGCTTGCTAGGACTGTCCTCGGATGCGACGG
AGGACGAGATCAGGAAGGCTTATAGGAAGTTGGCGTTGAAGCACCATCCG
GACAGGCATACGAGCAGCAGCGAGGAGGAGAAGGCGAAGGCGGAGAAGGA
GTTCAAGAACGTGGCCGAGGCGTATGAGGTGTTGAGCGACAAGGAGAAGA
AGGCACGGTATGACAGTGGAGTGGACATCGAAGACTTGGATAACCCGCAC
GCGCATGGGCCGTCGCGCGGAGGGGGCTTCGGGGGGATGGGGGGAGGGGG
CATTGATCCGAATATTTTATTTCAAATGTTCATGCAGCAGCAGGCAGGGG
CGGGAGGAGGGTTTGGAGGGAGAGGGAGGGGAGGTCCTTTTTAGGAGAGG
GGGAGGGAAGGAGGGATGGCGTGTGGTTTGTGTGCGAACGGTATATGCGC
TTGAGGATGACGATGAAGGTTGGTTGGGAGAGACAAAGAAGAAACACACA
AGTGATATGAGGCAA
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protein sequence of NO01G04680.2

>NO01G04680.2-protein ID=NO01G04680.2-protein|Name=NO01G04680.2|organism=Nannochloropsis oceanica|type=polypeptide|length=518bp
MGEEEPVLVKTAVHWKDEGNEFYKKGDYRAAIDAYSLAIAEAPDEPSFYG
NRAAAHMMILAYESAIEDCDKAIALSPGMVKAYFRKGKALAILGKFDESI
AAYRAGLQQDPNNAQGHSEKTEVETAVKALNKARDILQEARPSPNGGNGS
SSSNAIARKRLFLQANTLLDVCLALAPSSFDAKLLKLECQVGLGQYDDAF
NSSNHLLRLAPSLAPLLHLRATCLYRLGNLENSIKHSQQAVRSDPDNASY
VALLKQVRSLDNKKKEGDTAFTHGQYQKAIQAWTEALAVDPTHKQICAKL
YNNRATAYAKMRRHADAVSDCKQALALDPQYLKALKRKAESLFVLGGEEN
LEQCLRDYETAAGLAPEEEEREYARKMHQAKVALKRAKRKDYYRLLGLSS
DATEDEIRKAYRKLALKHHPDRHTSSSEEEKAKAEKEFKNVAEAYEVLSD
KEKKARYDSGVDIEDLDNPHAHGPSRGGGFGGMGGGGIDPNILFQMFMQQ
QAGAGGGFGGRGRGGPF*
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mRNA from alignment at chr1:1235383..1237623+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G04680.2 ID=NO01G04680.2|Name=NO01G04680.2|organism=Nannochloropsis oceanica|type=mRNA|length=2241bp|location=Sequence derived from alignment at chr1:1235383..1237623+ (Nannochloropsis oceanica)
AGACAGCCAAGCCTAGGTGACGCACACCCGCTCTGCCCTGATGGGGGAGG
AAGAACCTGTCTTGGTCAAGACGGCCGTGCACTGGTAAGTCAATCATATC
CATTTCTTCAGACTTTTTGATAGCCTCCCCACACCTCCATGCGTTGTCGA
ACTTCGTATATTATGATGGCTGCGGCCTCCACCATGCATGCCCATGTTGC
ACACGAAGATTATAGCGTAGAACCAGAAAAGTACCTGGATATGGTGCACC
TTTCTGTGATTTTGCTCTTGCCTTTTTGGCTCTTTTTTGCCGGCAAGTCC
CGCCTCGCTCCTTCTCCGCCACACGCCCGCTCCCACTGACCACGCGTATG
TCTATCCCCAACACACACTCTGTCTCTGTCCGAAACGCCATAAATCCAAC
TCCCCTGCCTACTCCCTGTATTGTTTTACAGCAGCTCGCTCTTAAGACAT
CTCCTTGTCTCCTTCTCATCCTTACCTCCCTGCCTTCTACTAAAACGCTC
ACCTCACAGGAAAGACGAAGGTAACGAGTTTTACAAAAAAGGCGACTATC
GGGCTGCCATCGACGCCTATAGCCTGGCCATCGCCGAGGCTCCCGATGAG
CCCTCATTCTACGGAAACCGAGCTGCGGCGCACATGATGATCTTGGCCTA
TGAAAGCGCCATCGAGGACTGTGATAAAGCGATTGCATTGAGTCCAGGGA
TGGTCAAGGCGTACTTTCGGAAGGGCAAAGCGTTGGCGATATTAGGTAAG
TAGATAAGGTAGGAATTACGATATGAGGGGGAACAAAAAGTGATGCAATG
CTCACGAGCACTCATCTCCATGACCTCTCCCTCCCTTCCTTCCAAGGCAA
ATTCGACGAAAGCATAGCTGCCTACCGCGCGGGGCTCCAACAAGATCCGA
ACAACGCGCAGGGCCACTCCGAGAAAACCGAGGTGGAAACAGCCGTCAAA
GCCCTGAACAAAGCACGTGACATACTTCAAGAGGCCCGACCGTCGCCCAA
TGGGGGAAATGGCAGCAGCAGCAGCAACGCGATCGCGAGGAAACGCCTCT
TTCTGCAAGCGAACACCCTGCTGGACGTATGTCTCGCCCTCGCGCCTTCC
TCCTTTGATGCCAAGCTCCTCAAGCTCGAATGTCAAGTGGGCCTTGGCCA
GTACGACGACGCCTTCAACAGCAGCAACCACCTGCTCCGCCTCGCCCCCT
CCCTGGCCCCTCTCCTGCACCTCCGGGCCACATGCCTCTACCGACTAGGC
AACCTCGAAAACTCTATCAAGCATTCCCAACAAGCCGTCCGCTCCGACCC
GGATAATGCCTCCTACGTGGCACTCCTTAAACAAGTGCGCTCGTTAGACA
ACAAAAAAAAAGAAGGCGACACCGCTTTCACGCACGGCCAGTACCAAAAA
GCGATTCAGGCATGGACGGAGGCCCTTGCCGTAGACCCAACGCACAAGCA
AATATGTGCCAAGCTGTACAATAACCGTGCCACCGCCTACGCTAAGATGC
GAAGACACGCCGATGCCGTCTCGGACTGCAAGCAGGCTTTGGCTCTGGAT
CCGCAATACCTTAAAGCCCTCAAAAGAAAAGCCGAGAGCCTGTTTGTTCT
GGGGGGGGAGGAGAATTTGGAGCAGTGCTTACGTGACTACGAGACAGCGG
CGGGGTTGGCGCCCGAGGAGGAGGAGAGAGAATATGCGCGGAAGATGCAC
CAGGCCAAGGTGGCGCTGAAGAGGGCAAAGAGGAAAGATTACTATCGCTT
GCTAGGACTGTCCTCGGATGCGACGGAGGACGAGATCAGGAAGGCTTATA
GGAAGTTGGCGTTGAAGCACCATCCGGACAGGCATACGAGCAGCAGCGAG
GAGGAGAAGGCGAAGGCGGAGAAGGAGTTCAAGAACGTGGCCGAGGCGTA
TGAGGTGTTGAGCGACAAGGAGAAGAAGGCACGGTATGACAGTGGAGTGG
ACATCGAAGACTTGGATAACCCGCACGCGCATGGGCCGTCGCGCGGAGGG
GGCTTCGGGGGGATGGGGGGAGGGGGCATTGATCCGAATATTTTATTTCA
AATGTTCATGCAGCAGCAGGCAGGGGCGGGAGGAGGGTTTGGAGGGAGAG
GGAGGGGAGGTCCTTTTTAGGAGAGGGGGAGGGAAGGAGGGATGGCGTGT
GGTTTGTGTGCGAACGGTATATGCGCTTGAGGATGACGATGAAGGTTGGT
TGGGAGAGACAAAGAAGAAACACACAAGTGATATGAGGCAA
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Coding sequence (CDS) from alignment at chr1:1235383..1237623+

>NO01G04680.2 ID=NO01G04680.2|Name=NO01G04680.2|organism=Nannochloropsis oceanica|type=CDS|length=1554bp|location=Sequence derived from alignment at chr1:1235383..1237623+ (Nannochloropsis oceanica)
ATGGGGGAGGAAGAACCTGTCTTGGTCAAGACGGCCGTGCACTGGAAAGA
CGAAGGTAACGAGTTTTACAAAAAAGGCGACTATCGGGCTGCCATCGACG
CCTATAGCCTGGCCATCGCCGAGGCTCCCGATGAGCCCTCATTCTACGGA
AACCGAGCTGCGGCGCACATGATGATCTTGGCCTATGAAAGCGCCATCGA
GGACTGTGATAAAGCGATTGCATTGAGTCCAGGGATGGTCAAGGCGTACT
TTCGGAAGGGCAAAGCGTTGGCGATATTAGGCAAATTCGACGAAAGCATA
GCTGCCTACCGCGCGGGGCTCCAACAAGATCCGAACAACGCGCAGGGCCA
CTCCGAGAAAACCGAGGTGGAAACAGCCGTCAAAGCCCTGAACAAAGCAC
GTGACATACTTCAAGAGGCCCGACCGTCGCCCAATGGGGGAAATGGCAGC
AGCAGCAGCAACGCGATCGCGAGGAAACGCCTCTTTCTGCAAGCGAACAC
CCTGCTGGACGTATGTCTCGCCCTCGCGCCTTCCTCCTTTGATGCCAAGC
TCCTCAAGCTCGAATGTCAAGTGGGCCTTGGCCAGTACGACGACGCCTTC
AACAGCAGCAACCACCTGCTCCGCCTCGCCCCCTCCCTGGCCCCTCTCCT
GCACCTCCGGGCCACATGCCTCTACCGACTAGGCAACCTCGAAAACTCTA
TCAAGCATTCCCAACAAGCCGTCCGCTCCGACCCGGATAATGCCTCCTAC
GTGGCACTCCTTAAACAAGTGCGCTCGTTAGACAACAAAAAAAAAGAAGG
CGACACCGCTTTCACGCACGGCCAGTACCAAAAAGCGATTCAGGCATGGA
CGGAGGCCCTTGCCGTAGACCCAACGCACAAGCAAATATGTGCCAAGCTG
TACAATAACCGTGCCACCGCCTACGCTAAGATGCGAAGACACGCCGATGC
CGTCTCGGACTGCAAGCAGGCTTTGGCTCTGGATCCGCAATACCTTAAAG
CCCTCAAAAGAAAAGCCGAGAGCCTGTTTGTTCTGGGGGGGGAGGAGAAT
TTGGAGCAGTGCTTACGTGACTACGAGACAGCGGCGGGGTTGGCGCCCGA
GGAGGAGGAGAGAGAATATGCGCGGAAGATGCACCAGGCCAAGGTGGCGC
TGAAGAGGGCAAAGAGGAAAGATTACTATCGCTTGCTAGGACTGTCCTCG
GATGCGACGGAGGACGAGATCAGGAAGGCTTATAGGAAGTTGGCGTTGAA
GCACCATCCGGACAGGCATACGAGCAGCAGCGAGGAGGAGAAGGCGAAGG
CGGAGAAGGAGTTCAAGAACGTGGCCGAGGCGTATGAGGTGTTGAGCGAC
AAGGAGAAGAAGGCACGGTATGACAGTGGAGTGGACATCGAAGACTTGGA
TAACCCGCACGCGCATGGGCCGTCGCGCGGAGGGGGCTTCGGGGGGATGG
GGGGAGGGGGCATTGATCCGAATATTTTATTTCAAATGTTCATGCAGCAG
CAGGCAGGGGCGGGAGGAGGGTTTGGAGGGAGAGGGAGGGGAGGTCCTTT
TTAG
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Synonyms
Publications