NO01G04680.1, NO01G04680.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G04680.1
Unique NameNO01G04680.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2251
Alignment locationchr1:1235151..1237502 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1235151..1237502 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G04680.1 vs.
Match: EWM29408.1 (ion channel [Nannochloropsis gaditana])

HSP 1 Score: 654.8 bits (1688), Expect = 1.900e-184
Identity = 341/460 (74.13%), Postives = 387/460 (84.13%), Query Frame = 0 
Query:    1 MMILAYESAIEDCDKAIALSPGMVKAYFRKGKALAILGKFDESIAAYRAGLQQDPNNAQGHSEKTEVETAVKALNKARDILQEARPSPNGGNGSSSSNAIARKRLFLQANTLLDVCLALAPSSFDAKLLKLECQVGLGQYDDAFNSSNHLLRLAPSLAPLLHLRATCLYRLGNLENSIKHSQQAVRSDPDNASYVALLKQVRSLDNKKKEGDTAFTHGQYQKAIQAWTEALAVDPTHKQICAKLYNNRATAYAKMRRHADAVSDCKQALALDPQYLKALKRKAESLFVLGGEENLEQCLRDYETAAGLAPEEEEREYARKMHQAKVALKRAKRKDYYRLLGLSSDATEDEIRKAYRKLALKHHPDRHTSSSEEEKAKAEKEFKNVAEAYEVLSDKEKKARYDSGVDIEDLDNPHAHGPSRGGGFGGMGG-GGIDPNILFQMFMQQQAGAGGGFGGRGRGG 460
            MMILAYE+AI+DC+KA+ALSP MVKAYFRKGKALA LGKFDE++ AY  GLQQDPNNAQGH+EK EVE  +KA  KA ++LQE R   +    +  +     KR F++AN L+D CL+LA +S   +LLKLECQVGLGQY++AF  SNHLLRL+PSLAPLL+LRA CLY LGN E ++KH QQAVRSDPDN +YV+LLK+VR+LD KKKEGDT FT GQYQ AI AWTEALAVDP+ K + AK++NNRATAYAKMR+H +AV+DCK+ALALDPQYLKALKRKAESL+ LGGEENLEQCLRDYE AA LAP  EEREYARKMHQ KVALKRAKRKD YR+LGLS+DATEDEIRKAYRKLALKHHPDRHT+SSEE KA AEK FK+VAEAYEVLSDKEK++RYDSG D+EDLDNP A   S  GGFGG GG GGIDPN+LFQMFMQQQA  GGG GG GRGG
Sbjct:   57 MMILAYEAAIDDCNKALALSPNMVKAYFRKGKALATLGKFDEAMTAYHQGLQQDPNNAQGHAEKAEVEAVMKAGAKATELLQETRGPGSSTLQNGQNGGAVHKRNFVRANALVDQCLSLASASPQVRLLKLECQVGLGQYEEAFAGSNHLLRLSPSLAPLLYLRAVCLYHLGNFEGALKHLQQAVRSDPDNHAYVSLLKKVRALDAKKKEGDTCFTQGQYQPAIDAWTEALAVDPSQKAVNAKMFNNRATAYAKMRKHTEAVADCKRALALDPQYLKALKRKAESLYALGGEENLEQCLRDYEAAARLAPASEEREYARKMHQVKVALKRAKRKDLYRILGLSTDATEDEIRKAYRKLALKHHPDRHTNSSEEAKAAAEKAFKDVAEAYEVLSDKEKRSRYDSGTDVEDLDNPQAQAGSHAGGFGGFGGRGGIDPNVLFQMFMQQQA-MGGGRGGGGRGG 515
The following BLAST results are available for this feature:
BLAST of NO01G04680.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29408.11.900e-18474.13ion channel [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G04680NO01G04680Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G04680.1NO01G04680.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G04680.1.cds1NO01G04680.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G04680.1.cds2NO01G04680.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G04680.1 ID=NO01G04680.1|Name=NO01G04680.1|organism=Nannochloropsis oceanica|type=mRNA|length=2251bp
TAAGAGATGATGAGAGATGATGTGATGACGGCCCCGGCTGGTGGCTTTAG
GCCTAGCATTACCATCTGTGTCGGGCGACGCTCTCCTGGCCACGACTCGG
TGCCTCTTTTCCTTGTCTTGGCGGCGACTGTCCGCTTCTATTTTCCTCCT
GAAAGCCAGTTGCTCACAGCCGCCCCGTCTTCTTCCCCTTCTTCTTTCGC
CGTTCCCGTGCCTGACACTATTCACCATCGATAGACAGCCAAGCCTAGGT
GACGCACACCCGCTCTGCCCTGATGGGGGAGGAAGAACCTGTCTTGGTCA
AGACGGCCGTGCACTGGTAAGTCAATCATATCCATTTCTTCAGACTTTTT
GATAGCCTCCCCACACCTCCATGCGTTGTCGAACTTCGTATATTATGATG
GCTGCGGCCTCCACCATGCATGCCCATGTTGCACACGAAGATTATAGCGT
AGAACCAGAAAAGTACCTGGATATGGTGCACCTTTCTGTGATTTTGCTCT
TGCCTTTTTGGCTCTTTTTTGCCGGCAAGTCCCGCCTCGCTCCTTCTCCG
CCACACGCCCGCTCCCACTGACCACGCGTATGTCTATCCCCAACACACAC
TCTGTCTCTGTCCGAAACGCCATAAATCCAACTCCCCTGCCTACTCCCTG
TATTGTTTTACAGCAGCTCGCTCTTAAGACATCTCCTTGTCTCCTTCTCA
TCCTTACCTCCCTGCCTTCTACTAAAACGCTCACCTCACAGGAAAGACGA
AGGTAACGAGTTTTACAAAAAAGGCGACTATCGGGCTGCCATCGACGCCT
ATAGCCTGGCCATCGCCGAGGCTCCCGATGAGCCCTCATTCTACGGAAAC
CGAGCTGCGGCGCACATGATGATCTTGGCCTATGAAAGCGCCATCGAGGA
CTGTGATAAAGCGATTGCATTGAGTCCAGGGATGGTCAAGGCGTACTTTC
GGAAGGGCAAAGCGTTGGCGATATTAGGCAAATTCGACGAAAGCATAGCT
GCCTACCGCGCGGGGCTCCAACAAGATCCGAACAACGCGCAGGGCCACTC
CGAGAAAACCGAGGTGGAAACAGCCGTCAAAGCCCTGAACAAAGCACGTG
ACATACTTCAAGAGGCCCGACCGTCGCCCAATGGGGGAAATGGCAGCAGC
AGCAGCAACGCGATCGCGAGGAAACGCCTCTTTCTGCAAGCGAACACCCT
GCTGGACGTATGTCTCGCCCTCGCGCCTTCCTCCTTTGATGCCAAGCTCC
TCAAGCTCGAATGTCAAGTGGGCCTTGGCCAGTACGACGACGCCTTCAAC
AGCAGCAACCACCTGCTCCGCCTCGCCCCCTCCCTGGCCCCTCTCCTGCA
CCTCCGGGCCACATGCCTCTACCGACTAGGCAACCTCGAAAACTCTATCA
AGCATTCCCAACAAGCCGTCCGCTCCGACCCGGATAATGCCTCCTACGTG
GCACTCCTTAAACAAGTGCGCTCGTTAGACAACAAAAAAAAAGAAGGCGA
CACCGCTTTCACGCACGGCCAGTACCAAAAAGCGATTCAGGCATGGACGG
AGGCCCTTGCCGTAGACCCAACGCACAAGCAAATATGTGCCAAGCTGTAC
AATAACCGTGCCACCGCCTACGCTAAGATGCGAAGACACGCCGATGCCGT
CTCGGACTGCAAGCAGGCTTTGGCTCTGGATCCGCAATACCTTAAAGCCC
TCAAAAGAAAAGCCGAGAGCCTGTTTGTTCTGGGGGGGGAGGAGAATTTG
GAGCAGTGCTTACGTGACTACGAGACAGCGGCGGGGTTGGCGCCCGAGGA
GGAGGAGAGAGAATATGCGCGGAAGATGCACCAGGCCAAGGTGGCGCTGA
AGAGGGCAAAGAGGAAAGATTACTATCGCTTGCTAGGACTGTCCTCGGAT
GCGACGGAGGACGAGATCAGGAAGGCTTATAGGAAGTTGGCGTTGAAGCA
CCATCCGGACAGGCATACGAGCAGCAGCGAGGAGGAGAAGGCGAAGGCGG
AGAAGGAGTTCAAGAACGTGGCCGAGGCGTATGAGGTGTTGAGCGACAAG
GAGAAGAAGGCACGGTATGACAGTGGAGTGGACATCGAAGACTTGGATAA
CCCGCACGCGCATGGGCCGTCGCGCGGAGGGGGCTTCGGGGGGATGGGGG
GAGGGGGCATTGATCCGAATATTTTATTTCAAATGTTCATGCAGCAGCAG
GCAGGGGCGGGAGGAGGGTTTGGAGGGAGAGGGAGGGGAGGTCCTTTTTA
G
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protein sequence of NO01G04680.1

>NO01G04680.1-protein ID=NO01G04680.1-protein|Name=NO01G04680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=462bp
MMILAYESAIEDCDKAIALSPGMVKAYFRKGKALAILGKFDESIAAYRAG
LQQDPNNAQGHSEKTEVETAVKALNKARDILQEARPSPNGGNGSSSSNAI
ARKRLFLQANTLLDVCLALAPSSFDAKLLKLECQVGLGQYDDAFNSSNHL
LRLAPSLAPLLHLRATCLYRLGNLENSIKHSQQAVRSDPDNASYVALLKQ
VRSLDNKKKEGDTAFTHGQYQKAIQAWTEALAVDPTHKQICAKLYNNRAT
AYAKMRRHADAVSDCKQALALDPQYLKALKRKAESLFVLGGEENLEQCLR
DYETAAGLAPEEEEREYARKMHQAKVALKRAKRKDYYRLLGLSSDATEDE
IRKAYRKLALKHHPDRHTSSSEEEKAKAEKEFKNVAEAYEVLSDKEKKAR
YDSGVDIEDLDNPHAHGPSRGGGFGGMGGGGIDPNILFQMFMQQQAGAGG
GFGGRGRGGPF*
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mRNA from alignment at chr1:1235151..1237502+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G04680.1 ID=NO01G04680.1|Name=NO01G04680.1|organism=Nannochloropsis oceanica|type=mRNA|length=2352bp|location=Sequence derived from alignment at chr1:1235151..1237502+ (Nannochloropsis oceanica)
TAAGAGATGATGAGAGATGATGTGATGACGGCCCCGGCTGGTGGCTTTAG
GCCTAGCATTACCATCTGTGTCGGGCGACGCTCTCCTGGCCACGACTCGG
TGCCTCTTTTCCTTGTCTTGGCGGCGACTGTCCGCTTCTATTTTCCTCCT
GAAAGCCAGTTGCTCACAGCCGCCCCGTCTTCTTCCCCTTCTTCTTTCGC
CGTTCCCGTGCCTGACACTATTCACCATCGATAGACAGCCAAGCCTAGGT
GACGCACACCCGCTCTGCCCTGATGGGGGAGGAAGAACCTGTCTTGGTCA
AGACGGCCGTGCACTGGTAAGTCAATCATATCCATTTCTTCAGACTTTTT
GATAGCCTCCCCACACCTCCATGCGTTGTCGAACTTCGTATATTATGATG
GCTGCGGCCTCCACCATGCATGCCCATGTTGCACACGAAGATTATAGCGT
AGAACCAGAAAAGTACCTGGATATGGTGCACCTTTCTGTGATTTTGCTCT
TGCCTTTTTGGCTCTTTTTTGCCGGCAAGTCCCGCCTCGCTCCTTCTCCG
CCACACGCCCGCTCCCACTGACCACGCGTATGTCTATCCCCAACACACAC
TCTGTCTCTGTCCGAAACGCCATAAATCCAACTCCCCTGCCTACTCCCTG
TATTGTTTTACAGCAGCTCGCTCTTAAGACATCTCCTTGTCTCCTTCTCA
TCCTTACCTCCCTGCCTTCTACTAAAACGCTCACCTCACAGGAAAGACGA
AGGTAACGAGTTTTACAAAAAAGGCGACTATCGGGCTGCCATCGACGCCT
ATAGCCTGGCCATCGCCGAGGCTCCCGATGAGCCCTCATTCTACGGAAAC
CGAGCTGCGGCGCACATGATGATCTTGGCCTATGAAAGCGCCATCGAGGA
CTGTGATAAAGCGATTGCATTGAGTCCAGGGATGGTCAAGGCGTACTTTC
GGAAGGGCAAAGCGTTGGCGATATTAGGTAAGTAGATAAGGTAGGAATTA
CGATATGAGGGGGAACAAAAAGTGATGCAATGCTCACGAGCACTCATCTC
CATGACCTCTCCCTCCCTTCCTTCCAAGGCAAATTCGACGAAAGCATAGC
TGCCTACCGCGCGGGGCTCCAACAAGATCCGAACAACGCGCAGGGCCACT
CCGAGAAAACCGAGGTGGAAACAGCCGTCAAAGCCCTGAACAAAGCACGT
GACATACTTCAAGAGGCCCGACCGTCGCCCAATGGGGGAAATGGCAGCAG
CAGCAGCAACGCGATCGCGAGGAAACGCCTCTTTCTGCAAGCGAACACCC
TGCTGGACGTATGTCTCGCCCTCGCGCCTTCCTCCTTTGATGCCAAGCTC
CTCAAGCTCGAATGTCAAGTGGGCCTTGGCCAGTACGACGACGCCTTCAA
CAGCAGCAACCACCTGCTCCGCCTCGCCCCCTCCCTGGCCCCTCTCCTGC
ACCTCCGGGCCACATGCCTCTACCGACTAGGCAACCTCGAAAACTCTATC
AAGCATTCCCAACAAGCCGTCCGCTCCGACCCGGATAATGCCTCCTACGT
GGCACTCCTTAAACAAGTGCGCTCGTTAGACAACAAAAAAAAAGAAGGCG
ACACCGCTTTCACGCACGGCCAGTACCAAAAAGCGATTCAGGCATGGACG
GAGGCCCTTGCCGTAGACCCAACGCACAAGCAAATATGTGCCAAGCTGTA
CAATAACCGTGCCACCGCCTACGCTAAGATGCGAAGACACGCCGATGCCG
TCTCGGACTGCAAGCAGGCTTTGGCTCTGGATCCGCAATACCTTAAAGCC
CTCAAAAGAAAAGCCGAGAGCCTGTTTGTTCTGGGGGGGGAGGAGAATTT
GGAGCAGTGCTTACGTGACTACGAGACAGCGGCGGGGTTGGCGCCCGAGG
AGGAGGAGAGAGAATATGCGCGGAAGATGCACCAGGCCAAGGTGGCGCTG
AAGAGGGCAAAGAGGAAAGATTACTATCGCTTGCTAGGACTGTCCTCGGA
TGCGACGGAGGACGAGATCAGGAAGGCTTATAGGAAGTTGGCGTTGAAGC
ACCATCCGGACAGGCATACGAGCAGCAGCGAGGAGGAGAAGGCGAAGGCG
GAGAAGGAGTTCAAGAACGTGGCCGAGGCGTATGAGGTGTTGAGCGACAA
GGAGAAGAAGGCACGGTATGACAGTGGAGTGGACATCGAAGACTTGGATA
ACCCGCACGCGCATGGGCCGTCGCGCGGAGGGGGCTTCGGGGGGATGGGG
GGAGGGGGCATTGATCCGAATATTTTATTTCAAATGTTCATGCAGCAGCA
GGCAGGGGCGGGAGGAGGGTTTGGAGGGAGAGGGAGGGGAGGTCCTTTTT
AG
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Coding sequence (CDS) from alignment at chr1:1235151..1237502+

>NO01G04680.1 ID=NO01G04680.1|Name=NO01G04680.1|organism=Nannochloropsis oceanica|type=CDS|length=1386bp|location=Sequence derived from alignment at chr1:1235151..1237502+ (Nannochloropsis oceanica)
ATGATGATCTTGGCCTATGAAAGCGCCATCGAGGACTGTGATAAAGCGAT
TGCATTGAGTCCAGGGATGGTCAAGGCGTACTTTCGGAAGGGCAAAGCGT
TGGCGATATTAGGCAAATTCGACGAAAGCATAGCTGCCTACCGCGCGGGG
CTCCAACAAGATCCGAACAACGCGCAGGGCCACTCCGAGAAAACCGAGGT
GGAAACAGCCGTCAAAGCCCTGAACAAAGCACGTGACATACTTCAAGAGG
CCCGACCGTCGCCCAATGGGGGAAATGGCAGCAGCAGCAGCAACGCGATC
GCGAGGAAACGCCTCTTTCTGCAAGCGAACACCCTGCTGGACGTATGTCT
CGCCCTCGCGCCTTCCTCCTTTGATGCCAAGCTCCTCAAGCTCGAATGTC
AAGTGGGCCTTGGCCAGTACGACGACGCCTTCAACAGCAGCAACCACCTG
CTCCGCCTCGCCCCCTCCCTGGCCCCTCTCCTGCACCTCCGGGCCACATG
CCTCTACCGACTAGGCAACCTCGAAAACTCTATCAAGCATTCCCAACAAG
CCGTCCGCTCCGACCCGGATAATGCCTCCTACGTGGCACTCCTTAAACAA
GTGCGCTCGTTAGACAACAAAAAAAAAGAAGGCGACACCGCTTTCACGCA
CGGCCAGTACCAAAAAGCGATTCAGGCATGGACGGAGGCCCTTGCCGTAG
ACCCAACGCACAAGCAAATATGTGCCAAGCTGTACAATAACCGTGCCACC
GCCTACGCTAAGATGCGAAGACACGCCGATGCCGTCTCGGACTGCAAGCA
GGCTTTGGCTCTGGATCCGCAATACCTTAAAGCCCTCAAAAGAAAAGCCG
AGAGCCTGTTTGTTCTGGGGGGGGAGGAGAATTTGGAGCAGTGCTTACGT
GACTACGAGACAGCGGCGGGGTTGGCGCCCGAGGAGGAGGAGAGAGAATA
TGCGCGGAAGATGCACCAGGCCAAGGTGGCGCTGAAGAGGGCAAAGAGGA
AAGATTACTATCGCTTGCTAGGACTGTCCTCGGATGCGACGGAGGACGAG
ATCAGGAAGGCTTATAGGAAGTTGGCGTTGAAGCACCATCCGGACAGGCA
TACGAGCAGCAGCGAGGAGGAGAAGGCGAAGGCGGAGAAGGAGTTCAAGA
ACGTGGCCGAGGCGTATGAGGTGTTGAGCGACAAGGAGAAGAAGGCACGG
TATGACAGTGGAGTGGACATCGAAGACTTGGATAACCCGCACGCGCATGG
GCCGTCGCGCGGAGGGGGCTTCGGGGGGATGGGGGGAGGGGGCATTGATC
CGAATATTTTATTTCAAATGTTCATGCAGCAGCAGGCAGGGGCGGGAGGA
GGGTTTGGAGGGAGAGGGAGGGGAGGTCCTTTTTAG
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Synonyms
Publications