|
|
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr1 | genome | chr1:1230800..1234193 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G04670.1 vs.
Match: EWM29412.1 (Cytochrome b5, heme-binding site [Nannochloropsis gaditana]) HSP 1 Score: 885.9 bits (2288), Expect = 6.300e-254 Identity = 409/473 (86.47%), Postives = 435/473 (91.97%), Query Frame = 0
Query: 49 MAPRDVETISSPA----TKDTLAEAVSQMNPSKEVNKNRLWYIHGKAYDLTDFIYKHPGGPTVLLNTQGRDCTALFEAFHPFTDRPATILSKMKEVTVSPEVLAEKCTDISKGNWFYLPDGTPDPFWAALKERCGRYMRENKVDRTMKWSTFLLHVFLLLIQPPMWWFGYVNAYPWYSHAAALAMGVTTWIAGRLGHDGGHFAISRKYWVNRVFGNWAGLGLSNMSYWEILHNVDHHTDTNTEKDPDLYHYVIFLRDHPNYPWSIFHRLQVARVYCYLVWSFTTAGLLMIEPMNMLLTGSGTRPPTVRLANFRLFFWVKLVFHMLLFPTVMLAIPMWLTWDSSENKWVVFAIRFASFVIYCGVTGLLFGIFSQVNHFSEDCIAAASRDTSWAVRQVETAANFCVDSSFWSLITAGIHIQIEHHLFPSLSSDRVLPLVPIVEATCKEFGVNYKNFKTFPSILDSVHAYIDTLAF 518
MAPRD ET+ SP KD LAEAVSQM P + KN LWYIHG+AYDLTDFI KHPGGPTVLLNTQGRDCTALFEAFHPFTDRPA +L+KMKEV VSP++LAEKCTDIS+GNWFYLPDGTPDPFWAALKERCG+YM+ENKV+RTMKWST LLHVFLL+IQPP+WWFGY++AYPWYSHAAA+AMGVTTWIAGRLGHDGGHFAIS YW+NR FGNWAGLGLSNMSYWEILHNVDHHTDTNTEKDPDLYHYV FLRDHP YPW IFHRLQVAR+YCY VWSFTTAGLLMIEPMNMLLTGSGTRPPTVRLA FR FFW KLVFHMLLFPTVML IP+WL WDS+ NK VV A+RFASFVIYC VTG+LFG+FSQVNHFSEDC+AAASR+TSWAVRQVETAANFCVDSSFWSLITAGIHIQIEHHLFP LSSDRVLPLVPIVE TCKEFGVNYKNFKTFPSIL SVHAYIDTLA+
Sbjct: 28 MAPRDEETVMSPGGDPTVKDPLAEAVSQMPPPNSIKKNELWYIHGRAYDLTDFINKHPGGPTVLLNTQGRDCTALFEAFHPFTDRPAKLLAKMKEVKVSPDILAEKCTDISQGNWFYLPDGTPDPFWAALKERCGKYMKENKVERTMKWSTLLLHVFLLMIQPPLWWFGYLDAYPWYSHAAAVAMGVTTWIAGRLGHDGGHFAISHHYWINRFFGNWAGLGLSNMSYWEILHNVDHHTDTNTEKDPDLYHYVYFLRDHPRYPWYIFHRLQVARIYCYAVWSFTTAGLLMIEPMNMLLTGSGTRPPTVRLAKFRFFFWAKLVFHMLLFPTVMLGIPIWLLWDSNPNKGVVIAVRFASFVIYCAVTGVLFGLFSQVNHFSEDCVAAASRNTSWAVRQVETAANFCVDSSFWSLITAGIHIQIEHHLFPGLSSDRVLPLVPIVEQTCKEFGVNYKNFKTFPSILSSVHAYIDTLAY 500
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G04670.1 ID=NO01G04670.1|Name=NO01G04670.1|organism=Nannochloropsis oceanica|type=mRNA|length=2674bp
CCCCACTTCTAGCACAGCCTCCCAGGGTGGGCTGTTCCGACCCTCGACCC
TCGCTGAGCAATCAACCACAGTCTCTTCCTTCAGTTCCTCCAGACGCTCC
ATATGATGGTGACACGCTTTTTTTTTTCTGCGGTCTTTCGACAAAAAATT
TCTCTTCTAGGCAAGGAAGTGTGCGGACCTCTCTCGCGCTACCGGTAAAG
GTTGAGTGAACCAACATTCCTGGAGGGGATAGCAAGTCCCATGGTTGGAG
ATGCCATGTGCACTCCGGAGAAGCAACTCCCTTTTTGTTCCATGTCTTCC
AAGCGCCACCCTGTCAAAGCCCGCCTCTCACACGCACCCTTACACTATCC
CTTCCGCACACATACAGGCAAGGCAAGCTACGCTCGCTTGTTCCATGGCG
CCGCGCGATGTGGAGACCATCTCTAGTCCCGCAACCAAGGACACCCTAGC
GGAGGCTGTGAGTCAGATGAATCCGTCTAAGGAGGTGAATAAGAATAGGC
TATGGTACATCCACGGCAAAGCCTACGACCTCACAGACTTCATCTACAAG
CATCCTGGTGGACCTACCGTCCTCCTCAACACCCAGGGACGGGACTGCAC
GGCACTCTTCGAGGCTTTCCACCCCTTCACTGACCGACCCGCTACCATTT
TGAGCAAAATGAAGGAGGTGACCGTCTCCCCCGAGGTCCTCGCGGAGAAG
TGCACGGACATTAGCAAGGGCAATTGGTTTTATCTGCCCGACGGGACCCC
GGACCCGTTCTGGGCCGCGTTGAAGGAACGGTGTGGGAGATATATGCGGG
AAAATAAGGTGGACAGGACGATGAAATGGTCGACATTCTTGTTGCACGTC
TTCTTGCTGTTAATCCAGCCGCCGATGTGGTGGTTTGGTTACGTGAATGC
GTACCCGTGGTATTCGCACGCGGCGGCCTTGGCGATGGGGGTGACGACCT
GGATCGCGGGGAGGTTGGGCCATGACGGAGGGCATTTCGCGATTTCGCGC
AAATACTGGGTGAACCGCGTGTTCGGAAACTGGGCAGGCTTGGGGTTGAG
TAACATGAGCTATTGGGAAATCCTGCATAATGTGGACCACCACACGGACA
CCAACACGGAAAAGGATCCGGATTTGTACCACTACGTGATCTTCCTGCGG
GACCATCCAAACTACCCGTGGTCCATCTTTCACCGGTTGCAGGTGGCGAG
GGTGTATTGCTACCTGGTGTGGAGCTTCACGACGGCGGGTCTGTTAATGA
TCGAGCCCATGAACATGCTGTTGACCGGATCAGGCACCCGCCCCCCGACG
GTGAGGTTGGCAAATTTCCGGTTGTTCTTTTGGGTGAAACTCGTATTCCA
TATGCTCTTGTTCCCGACCGTGATGTTGGCAATCCCTATGTGGTTGACGT
GGGACAGCTCGGAGAATAAGTGGGTGGTGTTTGCCATCCGATTTGCGAGT
TTTGTGATTTATTGCGGGGTGACGGGCTTGTTGTTTGGGATCTTCTCGCA
GGTGAATCACTTCTCCGAGGACTGCATTGCGGCCGCCAGTCGTGATACCT
CCTGGGCCGTGCGCCAAGTAGAGACAGCGGCGAATTTCTGCGTGGATTCA
TCGTTTTGGTCCTTGATCACTGCGGGTATCCACATCCAGATTGAGCACCA
TTTGTTCCCTTCCTTGTCCTCGGATCGTGTCTTGCCCCTTGTTCCCATCG
TGGAGGCGACGTGCAAGGAGTTTGGCGTTAATTACAAGAACTTCAAGACA
TTTCCTTCCATCCTGGACTCTGTCCATGCTTATATTGACACCTTGGCCTT
CCCCAACAAGCCGGTGGTGGTGGCAGCGGAGGGGTCGACGGGGATGGAGG
GAGGGGTGGAGGGAGGGGCGGAGGGAGGGGCGGAGTTGACGACAGTGACG
TCGGAGGGGGTTAAGGCGTAAGTGAAGCGAGGAGGGGAGGAAAGGAATAT
TGGGGGGATTAAATGCTGCGGATAGGAGGAAGTGATGAAAGAGGGACAAT
GAGATGAAGAGAAGAAGACATGCACACACAACGACACACTGATACGCATG
TCGGCGAGAGCAGAAGGAGCTTGTGGATGATTAACAGAGAGAACGGTAAG
AGAGCGTACGCTCAAGGGACGAGGCTTTATTCCGTGCGAGAAGGAGGGGG
AAAGCGAGGGCCGAAAGGGAAAAAAGGGAGAAAGTTGTACAGAAGAGTAC
GTACAGCAAGGGAAGGGAGCAAAAGAGGCAGGCTATGTCGTAGCGTCTGT
TTTCCACTCTCCTCTGAATTTTGGGAAGTCCTGCTTGTCATTAAGTTGAG
TGTGATTTTTGTAGAGATGGAGCGCGCACACACACGCACGCAGGACTTAT
ACAGGGTACGCTCCTAAAAACAAACAGGCGAACAGATAAATAGGAACCCT
TTGATTGAGAAAAAATGAAAAAATAAAAACCAAAAAACAGAGGAATGAAT
GAGCATGGTTGGGTAGAGGAAACGGATGTGATGGAGGGAAGGCACGCAGG
AGAGCATGAGTTGTCTTGGATAAGCTGCCAGTCGCGTCCTGCTGAGGCCT
TAATGAATGGGTCTGTCATTTGCCTCTCCACCGAAATATCATCCCGACTT
TCCCAGAAAAAGTAAAACGAAAAGTTTGTTGCTTGGTATATAATGAGAGT
GGCAGGGAGGGCCGTTATCTTTCT back to topprotein sequence of NO01G04670.1 >NO01G04670.1-protein ID=NO01G04670.1-protein|Name=NO01G04670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=557bp
MPCALRRSNSLFVPCLPSATLSKPASHTHPYTIPSAHIQARQATLACSMA
PRDVETISSPATKDTLAEAVSQMNPSKEVNKNRLWYIHGKAYDLTDFIYK
HPGGPTVLLNTQGRDCTALFEAFHPFTDRPATILSKMKEVTVSPEVLAEK
CTDISKGNWFYLPDGTPDPFWAALKERCGRYMRENKVDRTMKWSTFLLHV
FLLLIQPPMWWFGYVNAYPWYSHAAALAMGVTTWIAGRLGHDGGHFAISR
KYWVNRVFGNWAGLGLSNMSYWEILHNVDHHTDTNTEKDPDLYHYVIFLR
DHPNYPWSIFHRLQVARVYCYLVWSFTTAGLLMIEPMNMLLTGSGTRPPT
VRLANFRLFFWVKLVFHMLLFPTVMLAIPMWLTWDSSENKWVVFAIRFAS
FVIYCGVTGLLFGIFSQVNHFSEDCIAAASRDTSWAVRQVETAANFCVDS
SFWSLITAGIHIQIEHHLFPSLSSDRVLPLVPIVEATCKEFGVNYKNFKT
FPSILDSVHAYIDTLAFPNKPVVVAAEGSTGMEGGVEGGAEGGAELTTVT
SEGVKA* back to topmRNA from alignment at chr1:1230800..1234193- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G04670.1 ID=NO01G04670.1|Name=NO01G04670.1|organism=Nannochloropsis oceanica|type=mRNA|length=3394bp|location=Sequence derived from alignment at chr1:1230800..1234193- (Nannochloropsis oceanica)
CCCCACTTCTAGCACAGCCTCCCAGGGTGGGCTGTTCCGACCCTCGACCC
TCGCTGAGCAATCAACCACAGTCTCTTCCTTCAGTTCCTCCAGACGCTCC
ATATGATGGTGACACGCTTTTTTTTTTCTGCGGTCTTTCGACAAAAAATT
TCTCTTCTAGGCAAGGAAGTGTGCGGACCTCTCTCGCGCTACCGGTAAAG
GTTGAGTGAACCAACATTCCTGGAGGGGATAGCAAGTCCCATGGTTGGAG
ATGCCATGTGCACTCCGGAGAAGCAACTCCCTTTTTGTTCCATGTCTTCC
AAGCGCCACCCTGTCAAAGCCCGCCTCTCACACGCACCCTTACACTATCC
CTTCCGCACACATACAGGCAAGGCAAGCTACGCTCGCTTGTTCCATGGCG
CCGCGCGATGTGGAGACCATCTCTAGTCCCGCAACCAAGGACACCCTAGC
GGAGGCTGTGAGTCAGATGAATCCGTCTAAGGAGGTGAATAAGAATAGGC
TATGGTACATCCACGGCAAAGCCTACGACCTCACAGACTTCATCTACAAG
CATCCTGGTAAGTGAGTGGTGTGGGGGCTGGCAGAGTCGAGAAGGGCTAA
GAAATTGAGGGACATACCCGAGACTCAAAACCATGTACTGTGGCTCTCGG
AGTTGGCTCCGAGAAGGGTTTAGGCGGAGGGAGGGAGGATGGGAGGGAGG
ATGGGAGGGAGGATGGAGGAAAGTGTGTTTACCACGGCCTTGTATCAATC
GCATGCCAAGAGATTCCTCTTTATGTGGCCTCCATTTGTCACTACACATG
CTGCTGATGCATTCTGACGTGGTATGCTCCGAGTTGCTGACTCATTTCCA
CTTGCATGTACTCGCTCAACAAACTTGCCCAACAAGCAACCAAGCGCTCG
CCCTCCGAGCCTCTCTAAGAGTCTGAGTCAGCAATGACAATCCTGTCACC
CACAACGCCTCGATCCAGCCCTATGATTGATCTCAGGCCATCGAGCACAT
ACGCGCGACTAACTGCCTCTTTTCCTCCCACGCTCCCTTCCTCCTTCCTC
CCTTCTTCTCTTGTAGGTGGACCTACCGTCCTCCTCAACACCCAGGGACG
GGACTGCACGGCACTCTTCGAGGCTTTCCACCCCTTCACTGACCGACCCG
CTACCATTTTGAGCAAAATGAAGGAGGTGTGTGCTTGCGCGAGGGAAGGA
GGGAAGGAAGGAGGAAGGGAAGAAGGAGGGAGGAAGGGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGAGAGAGGTCTCATATCGATCAAGCCTAGCGCCAG
GCGTAAATTTCTTCTTTCTTCTTGAATCCACCCTCTGATGCAAGCACTCT
TCCCCCCTCCCTCCTTCCTCATATTCTCCTTCTTCAGGTGACCGTCTCCC
CCGAGGTCCTCGCGGAGAAGTGCACGGACATTAGCAAGGGCAATTGGTTT
TATCTGCCCGACGGGACCCCGGACCCGTTCTGGGCCGCGTTGAAGGAACG
GTGTGGGAGATATATGCGGGAAAATAAGGTGGACAGGACGATGAAATGGT
CGACATTCTTGTTGCACGTCTTCTTGCTGTTAATCCAGCCGCCGATGTGG
TGGTTTGGTTACGTGAATGCGTACCCGTGGTATTCGCACGCGGCGGCCTT
GGCGATGGGGGTGACGACCTGGATCGCGGGGAGGTTGGGCCATGACGGAG
GGCATTTCGCGATTTCGCGCAAATACTGGGTGAACCGCGTGTTCGGAAAC
TGGGCAGGCTTGGGGTTGAGTAACATGAGCTATTGGGAAATCCTGCATAA
TGTGGACCACCACACGGACACCAACACGGAAAAGGATCCGGATTTGTACC
ACTACGTGATCTTCCTGCGGGACCATCCAAACTACCCGTGGTCCATCTTT
CACCGGTTGCAGGTGGCGAGGGTGTATTGCTACCTGGTGTGGAGCTTCAC
GACGGCGGGTCTGTTAATGATCGAGCCCATGAACATGCTGTTGACCGGAT
CAGGCACCCGCCCCCCGACGGTGAGGTTGGCAAATTTCCGGTTGTTCTTT
TGGGTGAAACTCGTATTCCATATGCTCTTGTTCCCGACCGTGATGTTGGC
AATCCCTATGTGGTTGACGTGGGACAGCTCGGAGAATAAGTGGGTGGTGT
TTGCCATCCGATTTGCGAGTTTTGTGATTTATTGCGGGGTGACGGGCTTG
TTGTTTGGGATCTTCTCGCAGGTGAATCACTTCTCCGAGGACTGCATTGC
GGCCGCCAGTCGTGATACCTCCTGGGCCGTGCGCCAAGTAGAGACAGCGG
CGAATTTCTGCGTGGATTCATCGTTTTGGTCCTTGATCACTGCGGGTATC
CACATCCAGATTGAGCACCATTTGTTCCCTTCCTTGTCCTCGGATCGTGT
CTTGCCCCTTGTTCCCATCGTGGAGGCGACGTGCAAGGAGTTTGGCGTTA
ATTACAAGAACTTCAAGACATTTCCTTCCATCCTGGACTCTGTCCATGCT
TATATTGACACCTTGGCCTTCCCCAACAAGCCGGTGGTGGTGGCAGCGGA
GGGGTCGACGGGGATGGAGGGAGGGGTGGAGGGAGGGGCGGAGGGAGGGG
CGGAGTTGACGACAGTGACGTCGGAGGGGGTTAAGGCGTAAGTGAAGCGA
GGAGGGGAGGAAAGGAATATTGGGGGGATTAAATGCTGCGGATAGGAGGA
AGTGATGAAAGAGGGACAATGAGATGAAGAGAAGAAGACATGCACACACA
ACGACACACTGATACGCATGTCGGCGAGAGCAGAAGGAGCTTGTGGATGA
TTAACAGAGAGAACGGTAAGAGAGCGTACGCTCAAGGGACGAGGCTTTAT
TCCGTGCGAGAAGGAGGGGGAAAGCGAGGGCCGAAAGGGAAAAAAGGGAG
AAAGTTGTACAGAAGAGTACGTACAGCAAGGGAAGGGAGCAAAAGAGGCA
GGCTATGTCGTAGCGTCTGTTTTCCACTCTCCTCTGAATTTTGGGAAGTC
CTGCTTGTCATTAAGTTGAGTGTGATTTTTGTAGAGATGGAGCGCGCACA
CACACGCACGCAGGACTTATACAGGGTACGCTCCTAAAAACAAACAGGCG
AACAGATAAATAGGAACCCTTTGATTGAGAAAAAATGAAAAAATAAAAAC
CAAAAAACAGAGGAATGAATGAGCATGGTTGGGTAGAGGAAACGGATGTG
ATGGAGGGAAGGCACGCAGGAGAGCATGAGTTGTCTTGGATAAGCTGCCA
GTCGCGTCCTGCTGAGGCCTTAATGAATGGGTCTGTCATTTGCCTCTCCA
CCGAAATATCATCCCGACTTTCCCAGAAAAAGTAAAACGAAAAGTTTGTT
GCTTGGTATATAATGAGAGTGGCAGGGAGGGCCGTTATCTTTCT back to topCoding sequence (CDS) from alignment at chr1:1230800..1234193- >NO01G04670.1 ID=NO01G04670.1|Name=NO01G04670.1|organism=Nannochloropsis oceanica|type=CDS|length=1671bp|location=Sequence derived from alignment at chr1:1230800..1234193- (Nannochloropsis oceanica)
ATGCCATGTGCACTCCGGAGAAGCAACTCCCTTTTTGTTCCATGTCTTCC
AAGCGCCACCCTGTCAAAGCCCGCCTCTCACACGCACCCTTACACTATCC
CTTCCGCACACATACAGGCAAGGCAAGCTACGCTCGCTTGTTCCATGGCG
CCGCGCGATGTGGAGACCATCTCTAGTCCCGCAACCAAGGACACCCTAGC
GGAGGCTGTGAGTCAGATGAATCCGTCTAAGGAGGTGAATAAGAATAGGC
TATGGTACATCCACGGCAAAGCCTACGACCTCACAGACTTCATCTACAAG
CATCCTGGTGGACCTACCGTCCTCCTCAACACCCAGGGACGGGACTGCAC
GGCACTCTTCGAGGCTTTCCACCCCTTCACTGACCGACCCGCTACCATTT
TGAGCAAAATGAAGGAGGTGACCGTCTCCCCCGAGGTCCTCGCGGAGAAG
TGCACGGACATTAGCAAGGGCAATTGGTTTTATCTGCCCGACGGGACCCC
GGACCCGTTCTGGGCCGCGTTGAAGGAACGGTGTGGGAGATATATGCGGG
AAAATAAGGTGGACAGGACGATGAAATGGTCGACATTCTTGTTGCACGTC
TTCTTGCTGTTAATCCAGCCGCCGATGTGGTGGTTTGGTTACGTGAATGC
GTACCCGTGGTATTCGCACGCGGCGGCCTTGGCGATGGGGGTGACGACCT
GGATCGCGGGGAGGTTGGGCCATGACGGAGGGCATTTCGCGATTTCGCGC
AAATACTGGGTGAACCGCGTGTTCGGAAACTGGGCAGGCTTGGGGTTGAG
TAACATGAGCTATTGGGAAATCCTGCATAATGTGGACCACCACACGGACA
CCAACACGGAAAAGGATCCGGATTTGTACCACTACGTGATCTTCCTGCGG
GACCATCCAAACTACCCGTGGTCCATCTTTCACCGGTTGCAGGTGGCGAG
GGTGTATTGCTACCTGGTGTGGAGCTTCACGACGGCGGGTCTGTTAATGA
TCGAGCCCATGAACATGCTGTTGACCGGATCAGGCACCCGCCCCCCGACG
GTGAGGTTGGCAAATTTCCGGTTGTTCTTTTGGGTGAAACTCGTATTCCA
TATGCTCTTGTTCCCGACCGTGATGTTGGCAATCCCTATGTGGTTGACGT
GGGACAGCTCGGAGAATAAGTGGGTGGTGTTTGCCATCCGATTTGCGAGT
TTTGTGATTTATTGCGGGGTGACGGGCTTGTTGTTTGGGATCTTCTCGCA
GGTGAATCACTTCTCCGAGGACTGCATTGCGGCCGCCAGTCGTGATACCT
CCTGGGCCGTGCGCCAAGTAGAGACAGCGGCGAATTTCTGCGTGGATTCA
TCGTTTTGGTCCTTGATCACTGCGGGTATCCACATCCAGATTGAGCACCA
TTTGTTCCCTTCCTTGTCCTCGGATCGTGTCTTGCCCCTTGTTCCCATCG
TGGAGGCGACGTGCAAGGAGTTTGGCGTTAATTACAAGAACTTCAAGACA
TTTCCTTCCATCCTGGACTCTGTCCATGCTTATATTGACACCTTGGCCTT
CCCCAACAAGCCGGTGGTGGTGGCAGCGGAGGGGTCGACGGGGATGGAGG
GAGGGGTGGAGGGAGGGGCGGAGGGAGGGGCGGAGTTGACGACAGTGACG
TCGGAGGGGGTTAAGGCGTAA back to top
|