NO01G04650.1, NO01G04650.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G04650.1
Unique NameNO01G04650.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length894
Alignment locationchr1:1226423..1227746 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1226423..1227746 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G04650.1 vs.
Match: EWM29407.1 (hypothetical protein Naga_100042g9 [Nannochloropsis gaditana])

HSP 1 Score: 381.7 bits (979), Expect = 2.100e-102
Identity = 205/283 (72.44%), Postives = 224/283 (79.15%), Query Frame = 0 
Query:   17 RRSGALMVGA-AALLVGWRAPEAQAFTLSNPIHQNLQSLARHHISSSFTPLHGSLPPYDAPYSQPEEEKNFWGNDYVPKERHPGTMPPGTRLEDKPIAELSPVSNIPYPHFQEWPYHYRFPAYQPRRLDFIEWMTQRGLMVEDDGDTRGVRFLGRKRRFRAQKAQADKAAAEGSDPMTVDERKQAMEGIDGDYWRSESAELVEPEPFIFERAKQKRFRIPYIVGVREEKAARLAAEAAAGGGGEGGLMGGRDVVSGASAPEAG-EKLAKGRKTAAKPPPTAEI 298
            R SG + VG  +  L+  R    + F  + PI  +   + RH   +S TP  G+LPPYDAPYSQPEEEKNFWGNDYVPK+RHPGTMPPGTRLEDKPI ELSPVSNIPYPHFQEWP+HYRFPAYQPRRLDFIEWMTQRGLMVEDDGDTRGVRFLGRKRRFRAQKAQADKAAAEGSDPMT DERKQAMEGIDGDYWRSE AEL+EPEP++FE AK KR R+PYIV VRE KAA+LAAEAAAGGG         +V+ G      G EK AKG K  AK PP+AEI
Sbjct:    5 RFSGLVFVGVMSGFLLDCRV---RGFVPATPILPSSAQVCRHW--NSVTPRPGALPPYDAPYSQPEEEKNFWGNDYVPKQRHPGTMPPGTRLEDKPIEELSPVSNIPYPHFQEWPFHYRFPAYQPRRLDFIEWMTQRGLMVEDDGDTRGVRFLGRKRRFRAQKAQADKAAAEGSDPMTPDERKQAMEGIDGDYWRSEGAELIEPEPYLFEMAKHKRERVPYIVTVREAKAAKLAAEAAAGGG---------EVIPGTGKGGGGVEKTAKGGK-KAKQPPSAEI 272
The following BLAST results are available for this feature:
BLAST of NO01G04650.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29407.12.100e-10272.44hypothetical protein Naga_100042g9 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G04650NO01G04650Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G04650.1NO01G04650.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G04650.1.cds1NO01G04650.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G04650.1.cds2NO01G04650.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G04650.1 ID=NO01G04650.1|Name=NO01G04650.1|organism=Nannochloropsis oceanica|type=mRNA|length=894bp
ATGAACATGCGATCGAAGACGGTAACAAGAATAAGGGAAAGCAACAGCCG
ACGGAGCGGGGCATTGATGGTGGGGGCGGCAGCGCTTCTTGTGGGATGGC
GGGCACCCGAGGCTCAGGCATTTACACTCAGCAACCCCATTCACCAAAAT
CTCCAATCCCTGGCCCGCCATCACATCAGTAGCAGCTTTACCCCCCTTCA
TGGCTCCCTCCCCCCTTACGATGCGCCCTACTCCCAACCGGAGGAAGAAA
AGAACTTTTGGGGCAATGACTACGTACCTAAGGAGCGACATCCCGGAACA
ATGCCACCAGGGACAAGGTTGGAAGACAAGCCGATTGCAGAGTTGTCCCC
TGTGTCGAATATTCCGTACCCGCACTTCCAGGAATGGCCCTATCATTACC
GTTTCCCGGCCTACCAGCCCCGCAGGCTGGACTTCATCGAGTGGATGACA
CAGAGAGGGCTTATGGTGGAAGATGATGGGGACACACGGGGAGTGCGATT
TTTGGGGAGGAAGAGGAGGTTTAGGGCGCAGAAGGCACAGGCGGATAAGG
CTGCGGCGGAGGGGAGTGACCCCATGACGGTCGATGAGAGGAAACAGGCA
ATGGAGGGGATCGACGGGGATTATTGGCGCTCGGAAAGCGCGGAGCTCGT
GGAACCGGAGCCGTTTATTTTTGAACGAGCTAAGCAGAAACGGTTTAGGA
TTCCGTATATTGTGGGTGTAAGGGAGGAGAAGGCGGCGAGGCTGGCAGCG
GAGGCGGCGGCGGGGGGAGGGGGGGAAGGAGGGTTGATGGGTGGGAGGGA
TGTGGTTAGTGGAGCATCGGCGCCAGAGGCAGGGGAAAAGCTAGCTAAGG
GGAGGAAGACGGCCGCTAAGCCGCCGCCGACTGCCGAGATCTAA
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protein sequence of NO01G04650.1

>NO01G04650.1-protein ID=NO01G04650.1-protein|Name=NO01G04650.1|organism=Nannochloropsis oceanica|type=polypeptide|length=298bp
MNMRSKTVTRIRESNSRRSGALMVGAAALLVGWRAPEAQAFTLSNPIHQN
LQSLARHHISSSFTPLHGSLPPYDAPYSQPEEEKNFWGNDYVPKERHPGT
MPPGTRLEDKPIAELSPVSNIPYPHFQEWPYHYRFPAYQPRRLDFIEWMT
QRGLMVEDDGDTRGVRFLGRKRRFRAQKAQADKAAAEGSDPMTVDERKQA
MEGIDGDYWRSESAELVEPEPFIFERAKQKRFRIPYIVGVREEKAARLAA
EAAAGGGGEGGLMGGRDVVSGASAPEAGEKLAKGRKTAAKPPPTAEI*
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mRNA from alignment at chr1:1226423..1227746-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G04650.1 ID=NO01G04650.1|Name=NO01G04650.1|organism=Nannochloropsis oceanica|type=mRNA|length=1324bp|location=Sequence derived from alignment at chr1:1226423..1227746- (Nannochloropsis oceanica)
ATGAACATGCGATCGAAGACGGTAACAAGAATAAGGGAAAGCAACAGCCG
ACGGAGCGGGGCATTGATGGTGGGGGCGGCAGCGCTTCTTGTGGGATGGC
GGGCACCCGAGGCTCAGGTACGTACGCAATGACGACCGCCCACTCTCCCC
CCGCCCTTCTAAAATGGCCTAATAAATATAGGATTGCCCGGCACTAGGAA
TACATACCCACGCTCGCGTGTTCTACACTCAATAACGCCAGGAGGTGGCC
TCCTCTTGAAACTATGCCGCAATTTTGCACACGCCCCTTTTCCCTCCCCC
CTTCCGGTGCTCCCTCCCTCCCTGTTTTCCTCTTAGCATCTCCTCCTGTC
CCGTCCAACGGACAAACAATGCTTGCATCCCAATGTCACGTCGCCTTCTA
GATCAACAATCATTCCCTCAAATTAATACCTCGTCATGCACGCGTATACA
GAGGCTCTGCTGCCTTTCTTTTTCTACTCCGAGAGCAACCATCCTCTCAC
CCGTCCCTTTCCTCCTCTCCTCCATTTCCACCTCCCTACCCACACAGGCA
TTTACACTCAGCAACCCCATTCACCAAAATCTCCAATCCCTGGCCCGCCA
TCACATCAGTAGCAGCTTTACCCCCCTTCATGGCTCCCTCCCCCCTTACG
ATGCGCCCTACTCCCAACCGGAGGAAGAAAAGAACTTTTGGGGCAATGAC
TACGTACCTAAGGAGCGACATCCCGGAACAATGCCACCAGGGACAAGGTT
GGAAGACAAGCCGATTGCAGAGTTGTCCCCTGTGTCGAATATTCCGTACC
CGCACTTCCAGGAATGGCCCTATCATTACCGTTTCCCGGCCTACCAGCCC
CGCAGGCTGGACTTCATCGAGTGGATGACACAGAGAGGGCTTATGGTGGA
AGATGATGGGGACACACGGGGAGTGCGATTTTTGGGGAGGAAGAGGAGGT
TTAGGGCGCAGAAGGCACAGGCGGATAAGGCTGCGGCGGAGGGGAGTGAC
CCCATGACGGTCGATGAGAGGAAACAGGCAATGGAGGGGATCGACGGGGA
TTATTGGCGCTCGGAAAGCGCGGAGCTCGTGGAACCGGAGCCGTTTATTT
TTGAACGAGCTAAGCAGAAACGGTTTAGGATTCCGTATATTGTGGGTGTA
AGGGAGGAGAAGGCGGCGAGGCTGGCAGCGGAGGCGGCGGCGGGGGGAGG
GGGGGAAGGAGGGTTGATGGGTGGGAGGGATGTGGTTAGTGGAGCATCGG
CGCCAGAGGCAGGGGAAAAGCTAGCTAAGGGGAGGAAGACGGCCGCTAAG
CCGCCGCCGACTGCCGAGATCTAA
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Coding sequence (CDS) from alignment at chr1:1226423..1227746-

>NO01G04650.1 ID=NO01G04650.1|Name=NO01G04650.1|organism=Nannochloropsis oceanica|type=CDS|length=894bp|location=Sequence derived from alignment at chr1:1226423..1227746- (Nannochloropsis oceanica)
ATGAACATGCGATCGAAGACGGTAACAAGAATAAGGGAAAGCAACAGCCG
ACGGAGCGGGGCATTGATGGTGGGGGCGGCAGCGCTTCTTGTGGGATGGC
GGGCACCCGAGGCTCAGGCATTTACACTCAGCAACCCCATTCACCAAAAT
CTCCAATCCCTGGCCCGCCATCACATCAGTAGCAGCTTTACCCCCCTTCA
TGGCTCCCTCCCCCCTTACGATGCGCCCTACTCCCAACCGGAGGAAGAAA
AGAACTTTTGGGGCAATGACTACGTACCTAAGGAGCGACATCCCGGAACA
ATGCCACCAGGGACAAGGTTGGAAGACAAGCCGATTGCAGAGTTGTCCCC
TGTGTCGAATATTCCGTACCCGCACTTCCAGGAATGGCCCTATCATTACC
GTTTCCCGGCCTACCAGCCCCGCAGGCTGGACTTCATCGAGTGGATGACA
CAGAGAGGGCTTATGGTGGAAGATGATGGGGACACACGGGGAGTGCGATT
TTTGGGGAGGAAGAGGAGGTTTAGGGCGCAGAAGGCACAGGCGGATAAGG
CTGCGGCGGAGGGGAGTGACCCCATGACGGTCGATGAGAGGAAACAGGCA
ATGGAGGGGATCGACGGGGATTATTGGCGCTCGGAAAGCGCGGAGCTCGT
GGAACCGGAGCCGTTTATTTTTGAACGAGCTAAGCAGAAACGGTTTAGGA
TTCCGTATATTGTGGGTGTAAGGGAGGAGAAGGCGGCGAGGCTGGCAGCG
GAGGCGGCGGCGGGGGGAGGGGGGGAAGGAGGGTTGATGGGTGGGAGGGA
TGTGGTTAGTGGAGCATCGGCGCCAGAGGCAGGGGAAAAGCTAGCTAAGG
GGAGGAAGACGGCCGCTAAGCCGCCGCCGACTGCCGAGATCTAA
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Synonyms
Publications