NO01G04640.1, NO01G04640.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G04640.1
Unique NameNO01G04640.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1583
Alignment locationchr1:1224258..1226106 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1224258..1226106 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G04640.1 vs.
Match: XP_005854113.1 (beta-ketoacyl-CoA thiolase [Nannochloropsis gaditana CCMP526]; EKU22248.1 beta-ketoacyl-CoA thiolase [Nannochloropsis gaditana CCMP526]; EWM29392.1 3-ketoacyl- mitochondrial [Nannochloropsis gaditana])

HSP 1 Score: 686.8 bits (1771), Expect = 4.100e-194
Identity = 348/406 (85.71%), Postives = 377/406 (92.86%), Query Frame = 0 
Query:    1 MAASAFAARKGLFIVGAKRTPFGAFGGKLKSFSATELAYLASKGALLQAKIDPKHVDVVYAGNVIQSSNDACYLSRHVGLKAGVPQHVPALTINRLCGSGFETVAMGCEAMELGQASVALAAGTENMSAAPFVVDGNSVRWGTPLGKGPEMKDSLWSGLTDSLAGTPMGITAENLGTKYGITRGECDEYGVRSQQLWAKAKEGGKFDAEVVPVEVKTKKGIELFTTDEHPRPQVDLAKISKLSPVFKKEGLVTAANASGIADGAGALVLATEEVIKAHGLIPLARIVSWARVGCDPSIMGIGPVEAIKGALSVAGLTLNDLDRVEINEAFAAQFLACRKELGLDMAKTNVHGGAIALGHPLAASGSRILASLANELK--EGGGKGYAMGSACIGGGQGIAVLLQGV 405
            M+AS+FAARKGLFIVGAKRTPFGAFGGKLK+FSATELAYLASK AL QAK+DP  V+VVYAGNVIQSSNDACYL+RH+GLKAGVPQHVPALTINRLCGSGFETV MGCEAMELGQASVALAAGTENMSAAPFVVDGNSVRWG PLGKGPEMKDSLW+GLTDSLAGTPMGITAENLG KYGITR ECDE+G+RSQ LWAKA+E G   AE+VPVEVKTKKGI+L T DEHPRPQV+LAK+SKL+PVFKK+GLVTAANASGIADGAGALVLATE+ + AH L PLAR+V+W+RVGCDPSIMGIGPVEAI+GALSV+G+ L DLDR+EINEAFAAQFLAC KELGLDM+KTNVHGGAIALGHPLAASGSRI+A LAN LK  +GG KGY MGSACIGGGQGIAVLLQ V
Sbjct:    1 MSASSFAARKGLFIVGAKRTPFGAFGGKLKNFSATELAYLASKAALCQAKLDPSAVNVVYAGNVIQSSNDACYLARHMGLKAGVPQHVPALTINRLCGSGFETVIMGCEAMELGQASVALAAGTENMSAAPFVVDGNSVRWGVPLGKGPEMKDSLWAGLTDSLAGTPMGITAENLGAKYGITRQECDEFGLRSQHLWAKAQERGALQAEIVPVEVKTKKGIDLVTVDEHPRPQVELAKMSKLNPVFKKDGLVTAANASGIADGAGALVLATEDTVHAHKLEPLARVVAWSRVGCDPSIMGIGPVEAIRGALSVSGVALADLDRIEINEAFAAQFLACAKELGLDMSKTNVHGGAIALGHPLAASGSRIVAHLANGLKGQQGGKKGYVMGSACIGGGQGIAVLLQAV 406
The following BLAST results are available for this feature:
BLAST of NO01G04640.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854113.14.100e-19485.71beta-ketoacyl-CoA thiolase [Nannochloropsis gadita... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G04640NO01G04640Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G04640.1NO01G04640.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G04640.1.cds1NO01G04640.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G04640.1.cds2NO01G04640.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G04640.1 ID=NO01G04640.1|Name=NO01G04640.1|organism=Nannochloropsis oceanica|type=mRNA|length=1583bp
CAGCAGTCCACGCAACAGCAGCAATAACAGCAGCATGGCCGCATCCGCCT
TTGCCGCTCGCAAGGGCCTCTTTATCGTGGGTGCAAAGCGCACGCCCTTT
GGTGCATTTGGTGGCAAGCTTAAGTCCTTCTCCGCCACTGAGCTCGCCTA
CCTGGCCTCAAAAGGCGCTCTACTCCAAGCTAAAATCGACCCCAAGCACG
TGGATGTAGTCTATGCCGGGAATGTCATCCAATCTTCCAACGATGCCTGT
TATCTGTCTCGTCACGTCGGTCTCAAGGCAGGAGTACCCCAACATGTGCC
AGCCCTGACCATCAACCGTCTCTGCGGCAGCGGCTTTGAGACAGTAGCGA
TGGGTTGCGAGGCTATGGAGCTCGGCCAGGCCTCCGTGGCCTTGGCAGCA
GGGACAGAAAACATGTCCGCGGCTCCCTTTGTCGTGGACGGGAATAGCGT
GAGGTGGGGCACGCCCCTGGGGAAAGGCCCGGAAATGAAGGACTCGCTTT
GGTCGGGATTAACAGACTCCTTGGCCGGTACGCCGATGGGGATTACCGCA
GAAAATTTGGGGACGAAGTACGGGATTACGAGGGGGGAGTGCGATGAGTA
CGGCGTGAGGTCTCAGCAGCTGTGGGCCAAGGCAAAGGAGGGGGGGAAAT
TTGACGCAGAGGTCGTCCCTGTGGAAGTGAAGACTAAGAAGGGGATCGAG
TTGTTCACGACTGACGAGCACCCGCGGCCGCAGGTGGATTTGGCCAAGAT
CTCGAAACTGTCCCCTGTGTTTAAGAAGGAGGGGCTAGTCACGGCGGCGA
ATGCAAGTGGCATTGCCGACGGTGCCGGTGCATTGGTGTTGGCGACCGAA
GAGGTTATCAAAGCTCATGGTCTGATACCTCTTGCGAGGATTGTGTCGTG
GGCGAGGGTGGGATGTGACCCCAGCATTATGGGCATAGGGCCCGTAGAGG
CGATCAAGGGGGCGTTGAGTGTAGCGGGGTTGACGTTGAACGACTTGGAT
CGGGTGGAGATCAACGAGGCGTTCGCCGCACAGTTTTTGGCGTGTCGTAA
GGAGTTGGGATTGGACATGGCCAAGACGAATGTGCATGGGGGGGCGATCG
CGTTGGGCCATCCATTGGCAGCGTCGGGATCCAGGATTCTTGCCAGTCTG
GCCAATGAGTTGAAGGAGGGAGGGGGCAAAGGGTATGCCATGGGGAGTGC
GTGTATTGGGGGTGGGCAGGGAATAGCGGTGTTGTTGCAGGGGGTTTAAT
TAAGGATGGAGGGAATAAGGGAAGGAGGGAGGGACGGAGGCTTTGTACTG
ATTTTGAATGGCAGCGGTTGTAAGCACAATTTACCGAAGTCAGAAGGCAG
AAGAAAATGTGGGGGAATGGTTTTCAGTAATTTTACACTTGAAAGGAAAG
GAAAAAGAAAAATTATGGATTATGGGGGAGTTGGACTCGTAGGAAAGTAT
GGTGCGCGCAGCTTCGCATTTTTGTCACGAGGGGAGGTAAAGATGTAGCA
TGACTGACGATGGTGACAGCGTGAGGAGACTAAGACACTATCGCACAGAA
AGTAGAAAACCAGCAGAAAGGGAGGGGGGGGGG
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protein sequence of NO01G04640.1

>NO01G04640.1-protein ID=NO01G04640.1-protein|Name=NO01G04640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=405bp
MAASAFAARKGLFIVGAKRTPFGAFGGKLKSFSATELAYLASKGALLQAK
IDPKHVDVVYAGNVIQSSNDACYLSRHVGLKAGVPQHVPALTINRLCGSG
FETVAMGCEAMELGQASVALAAGTENMSAAPFVVDGNSVRWGTPLGKGPE
MKDSLWSGLTDSLAGTPMGITAENLGTKYGITRGECDEYGVRSQQLWAKA
KEGGKFDAEVVPVEVKTKKGIELFTTDEHPRPQVDLAKISKLSPVFKKEG
LVTAANASGIADGAGALVLATEEVIKAHGLIPLARIVSWARVGCDPSIMG
IGPVEAIKGALSVAGLTLNDLDRVEINEAFAAQFLACRKELGLDMAKTNV
HGGAIALGHPLAASGSRILASLANELKEGGGKGYAMGSACIGGGQGIAVL
LQGV*
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mRNA from alignment at chr1:1224258..1226106+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G04640.1 ID=NO01G04640.1|Name=NO01G04640.1|organism=Nannochloropsis oceanica|type=mRNA|length=1849bp|location=Sequence derived from alignment at chr1:1224258..1226106+ (Nannochloropsis oceanica)
CAGCAGTCCACGCAACAGCAGCAATAACAGCAGCATGGCCGCATCCGCCT
TTGCCGCTCGCAAGGGCCTCTTTATCGTGGGTGCAAAGCGCACGCCCTTT
GGTACGTTCTTGAATTTCATAGTATCGTCATTCTTGAACCAGGACTGAGC
TAACTTATGCAAGCAAGCCATCCCCTCAAGCTGTGCCGTCCGTATGCCTT
CAATCTGCTCCTTCATCCATCTAGACTGCATGCTTCCTCTCGCGTCTCAA
TTTTGCTCTTGTTTCTCACCCTCTCGCATCTCAATTTTGCTCTTGTTTCT
CATCCAGGCTTTGTATTCTATCAGCACAGCACTTGCCTCGGCCTCACCAT
CATCCTTCCCCTCACAGGTGCATTTGGTGGCAAGCTTAAGTCCTTCTCCG
CCACTGAGCTCGCCTACCTGGCCTCAAAAGGCGCTCTACTCCAAGCTAAA
ATCGACCCCAAGCACGTGGATGTAGTCTATGCCGGGAATGTCATCCAATC
TTCCAACGATGCCTGTTATCTGTCTCGTCACGTCGGTCTCAAGGCAGGAG
TACCCCAACATGTGCCAGCCCTGACCATCAACCGTCTCTGCGGCAGCGGC
TTTGAGACAGTAGCGATGGGTTGCGAGGCTATGGAGCTCGGCCAGGCCTC
CGTGGCCTTGGCAGCAGGGACAGAAAACATGTCCGCGGCTCCCTTTGTCG
TGGACGGGAATAGCGTGAGGTGGGGCACGCCCCTGGGGAAAGGCCCGGAA
ATGAAGGACTCGCTTTGGTCGGGATTAACAGACTCCTTGGCCGGTACGCC
GATGGGGATTACCGCAGAAAATTTGGGGACGAAGTACGGGATTACGAGGG
GGGAGTGCGATGAGTACGGCGTGAGGTCTCAGCAGCTGTGGGCCAAGGCA
AAGGAGGGGGGGAAATTTGACGCAGAGGTCGTCCCTGTGGAAGTGAAGAC
TAAGAAGGGGATCGAGTTGTTCACGACTGACGAGCACCCGCGGCCGCAGG
TGGATTTGGCCAAGATCTCGAAACTGTCCCCTGTGTTTAAGAAGGAGGGG
CTAGTCACGGCGGCGAATGCAAGTGGCATTGCCGACGGTGCCGGTGCATT
GGTGTTGGCGACCGAAGAGGTTATCAAAGCTCATGGTCTGATACCTCTTG
CGAGGATTGTGTCGTGGGCGAGGGTGGGATGTGACCCCAGCATTATGGGC
ATAGGGCCCGTAGAGGCGATCAAGGGGGCGTTGAGTGTAGCGGGGTTGAC
GTTGAACGACTTGGATCGGGTGGAGATCAACGAGGCGTTCGCCGCACAGT
TTTTGGCGTGTCGTAAGGAGTTGGGATTGGACATGGCCAAGACGAATGTG
CATGGGGGGGCGATCGCGTTGGGCCATCCATTGGCAGCGTCGGGATCCAG
GATTCTTGCCAGTCTGGCCAATGAGTTGAAGGAGGGAGGGGGCAAAGGGT
ATGCCATGGGGAGTGCGTGTATTGGGGGTGGGCAGGGAATAGCGGTGTTG
TTGCAGGGGGTTTAATTAAGGATGGAGGGAATAAGGGAAGGAGGGAGGGA
CGGAGGCTTTGTACTGATTTTGAATGGCAGCGGTTGTAAGCACAATTTAC
CGAAGTCAGAAGGCAGAAGAAAATGTGGGGGAATGGTTTTCAGTAATTTT
ACACTTGAAAGGAAAGGAAAAAGAAAAATTATGGATTATGGGGGAGTTGG
ACTCGTAGGAAAGTATGGTGCGCGCAGCTTCGCATTTTTGTCACGAGGGG
AGGTAAAGATGTAGCATGACTGACGATGGTGACAGCGTGAGGAGACTAAG
ACACTATCGCACAGAAAGTAGAAAACCAGCAGAAAGGGAGGGGGGGGGG
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Coding sequence (CDS) from alignment at chr1:1224258..1226106+

>NO01G04640.1 ID=NO01G04640.1|Name=NO01G04640.1|organism=Nannochloropsis oceanica|type=CDS|length=1215bp|location=Sequence derived from alignment at chr1:1224258..1226106+ (Nannochloropsis oceanica)
ATGGCCGCATCCGCCTTTGCCGCTCGCAAGGGCCTCTTTATCGTGGGTGC
AAAGCGCACGCCCTTTGGTGCATTTGGTGGCAAGCTTAAGTCCTTCTCCG
CCACTGAGCTCGCCTACCTGGCCTCAAAAGGCGCTCTACTCCAAGCTAAA
ATCGACCCCAAGCACGTGGATGTAGTCTATGCCGGGAATGTCATCCAATC
TTCCAACGATGCCTGTTATCTGTCTCGTCACGTCGGTCTCAAGGCAGGAG
TACCCCAACATGTGCCAGCCCTGACCATCAACCGTCTCTGCGGCAGCGGC
TTTGAGACAGTAGCGATGGGTTGCGAGGCTATGGAGCTCGGCCAGGCCTC
CGTGGCCTTGGCAGCAGGGACAGAAAACATGTCCGCGGCTCCCTTTGTCG
TGGACGGGAATAGCGTGAGGTGGGGCACGCCCCTGGGGAAAGGCCCGGAA
ATGAAGGACTCGCTTTGGTCGGGATTAACAGACTCCTTGGCCGGTACGCC
GATGGGGATTACCGCAGAAAATTTGGGGACGAAGTACGGGATTACGAGGG
GGGAGTGCGATGAGTACGGCGTGAGGTCTCAGCAGCTGTGGGCCAAGGCA
AAGGAGGGGGGGAAATTTGACGCAGAGGTCGTCCCTGTGGAAGTGAAGAC
TAAGAAGGGGATCGAGTTGTTCACGACTGACGAGCACCCGCGGCCGCAGG
TGGATTTGGCCAAGATCTCGAAACTGTCCCCTGTGTTTAAGAAGGAGGGG
CTAGTCACGGCGGCGAATGCAAGTGGCATTGCCGACGGTGCCGGTGCATT
GGTGTTGGCGACCGAAGAGGTTATCAAAGCTCATGGTCTGATACCTCTTG
CGAGGATTGTGTCGTGGGCGAGGGTGGGATGTGACCCCAGCATTATGGGC
ATAGGGCCCGTAGAGGCGATCAAGGGGGCGTTGAGTGTAGCGGGGTTGAC
GTTGAACGACTTGGATCGGGTGGAGATCAACGAGGCGTTCGCCGCACAGT
TTTTGGCGTGTCGTAAGGAGTTGGGATTGGACATGGCCAAGACGAATGTG
CATGGGGGGGCGATCGCGTTGGGCCATCCATTGGCAGCGTCGGGATCCAG
GATTCTTGCCAGTCTGGCCAATGAGTTGAAGGAGGGAGGGGGCAAAGGGT
ATGCCATGGGGAGTGCGTGTATTGGGGGTGGGCAGGGAATAGCGGTGTTG
TTGCAGGGGGTTTAA
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Synonyms
Publications