NO01G04620.1, NO01G04620.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G04620.1
Unique NameNO01G04620.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2307
Alignment locationchr1:1218954..1221260 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1218954..1221260 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G04620.1 vs.
Match: EWM29417.1 (ribonucleoprotein LSM [Nannochloropsis gaditana])

HSP 1 Score: 220.7 bits (561), Expect = 7.400e-54
Identity = 155/255 (60.78%), Postives = 173/255 (67.84%), Query Frame = 0 
Query:    1 MAAPGKLIGSHISLISNKDIRYEGILFSIDQEKSCVTLQAVKCLGTEGRTPADGQAYPADDTLYDYILFEASDIKDLHVHDAPSTPA-ASAPA---PKAVPASQQQQQQQAPPQPQQASRPPSQQQQQYQQQRPVGAGGRGAPRGGRYSTRGGGGGRGG--GRGGGIGGDRPTVSGPLPGTGGHLLNRRGKVEGASQGGPEGGEGEFDFQEALQGFNKEEEFSKLAVNDDNTSISNNDTEAGGAGATEGGGNIEG 250
            M  PGKLIGS ISL+SNKDIRYEG+L++IDQEKS VTLQ+VKC GTEGRT A GQ Y  DD +YDYILFEASDIKDLHVH+A S PA A +PA   P + PA  QQ  QQ   QP   S PP +QQQQ  Q RP   G  GA RGGR S    GGGRGG  GRGG  GG      G LPGTGGHLL RRGK EG + GGPE G+GEFDF+ ALQGFNKEEE +KL+V ++          + G G   GGGN  G
Sbjct:    1 MGTPGKLIGSVISLVSNKDIRYEGVLYAIDQEKSSVTLQSVKCFGTEGRTGA-GQEYLPDDKVYDYILFEASDIKDLHVHEAASAPAPAPSPAKDVPSSTPAPTQQPSQQQ--QPLTKSAPPQRQQQQ--QARPAAGGRGGASRGGRGSY---GGGRGGVRGRGGREGG------GALPGTGGHLLGRRGKTEGGASGGPEKGQGEFDFESALQGFNKEEEMAKLSVKEE-AGGEGGAVGSEGTGGAGGGGNDPG 240
The following BLAST results are available for this feature:
BLAST of NO01G04620.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29417.17.400e-5460.78ribonucleoprotein LSM [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G04620NO01G04620Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G04620.1NO01G04620.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G04620.1.cds1NO01G04620.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G04620.1 ID=NO01G04620.1|Name=NO01G04620.1|organism=Nannochloropsis oceanica|type=mRNA|length=2307bp
ATGGCGGCACCGGGCAAGCTTATCGGCTCGCACATCAGCCTCATCTCCAA
CAAGGACATCCGGTACGAAGGCATACTCTTCTCTATTGACCAAGAGAAGT
CCTGCGTCACCTTGCAAGCAGTCAAGTGCCTCGGCACCGAAGGCCGGACC
CCCGCAGACGGACAGGCGTATCCGGCTGATGACACCTTGTACGATTACAT
CCTATTCGAGGCTTCGGACATCAAGGACTTGCACGTCCACGACGCCCCCT
CTACCCCAGCCGCTTCTGCTCCCGCACCCAAGGCCGTTCCTGCTTCCCAA
CAGCAGCAGCAGCAACAAGCACCGCCGCAGCCGCAACAAGCTTCGAGACC
ACCATCACAACAGCAGCAGCAGTATCAGCAGCAACGTCCAGTGGGTGCTG
GTGGTCGTGGAGCCCCAAGAGGAGGACGATACAGCACACGAGGAGGAGGA
GGAGGACGAGGAGGAGGGCGAGGGGGAGGGATTGGAGGAGATCGTCCCAC
CGTCTCCGGCCCTTTGCCTGGCACAGGCGGGCATTTATTAAACCGACGAG
GAAAGGTTGAGGGAGCGTCTCAGGGCGGACCGGAGGGAGGGGAGGGTGAG
TTTGATTTCCAAGAGGCGCTGCAGGGTTTTAATAAAGAGGAGGAGTTCTC
GAAGTTGGCTGTTAACGACGACAACACCAGCATCAGCAACAACGATACCG
AGGCAGGTGGAGCGGGAGCCACGGAGGGCGGCGGAAATATCGAGGGTGCG
ACGACGGCGGCAGTAGCAGCAGCGGTGGTTCCGGAAGTAAAGAAATATAA
CAAGAGCTCATTCTTTGACGACCTAAGCTCGGGACAAGGGATGGGAGGGC
GGCCGACCCTGGCAGAGGAGAGGAAGACGAACATGGACACGTTTGGCGTG
GCTGCGCTACACAACCCCAACAATCGTCGGTTCGGAGGAGGGAGAGGAGG
GGGCCGTGGTGGGTCTTTCAGGGGTGGGGGCGGACGGGGTGGGGGGAGGG
GTCGTGGGGGGTATAGGGGAGGGAGGGGGGGAGGGAGGGGATACGCCCCG
GCCGCCCAGGGCGGGGGAGGAGCACCGGTACAGGCTTAAGTGGAGGGAGG
AAAAGAGAAGGGGAGAGATGAGAGGGTTGGTGGTCGTGGATGGGACGAAT
GGAAGAGACGGAGGAGGAGGAGGAGGAGGAGGACGACGACGAGGACGAGA
GGAGGAGTGGAGGTAAGAGTGTCTGTACTTGGCATGCACTGCGGCGACTG
ACATCATTCGCGGGCGGGAGAATGAGGGATCACATTAAAAGGGAAGTCTT
CTTCGAGGAGAAGGAGGAGGAGGACGCACCTTAGCGAGAGGTAGGGAGAA
ACAGGGAGATAGGAGAGATCAGTACGGGAAAGTACATGCTGTGATCTGAT
GAAGAGGCAACAGAGACAACGCAAAAACACGCGCATTTATGGAGAACTTA
CGAAAAGGCTGCATCAGCAGGAGGAGCAGTAGCAGCATCATAGAAAAGCA
CATCCCCCCCCAACAAGAACGAGACAGTCAAATTTTTAAGTGCTGTCGAG
GAGGAGGAAGGGGGAGGAAGAGGAGTAGAGTCAGGAGGAATGAGGGGAGG
ATATGGAATTAAAAGATTATTTCTTTTCATACTTCGAAGGAGTAGTAGAT
GTAAGGACGACGATATAGAGAGGAGGGGGTGAGATAGGCAGAGGAAGAAG
AAAGAAGGATAACATGAAGATGGATCAGAAGGAGAAGCCCGAAGAGTAGA
AAAGAAGTATGAGAGAAGATAAAAGATGAATACGAAGAAAAGAAGGAGTG
GGGGAAAGAACGGTTGAGGCAGGGGTATGGAGACAGCAGACGGAGAACAA
ACCGTCGAAAGGGAGAGCTTGAGGGAGGGAGGGAGGGAGGGAGGGAGAGT
AGGGAACAGAGAGAGAGAAGGAAAGAACGATGGGAAGGGTGTGGTGGCTC
GGCTGGGTCGGGCAGTTCATCAGTTGAATTCTTCGGCAGGGTGGAGGCTT
GTGTGATTGTGCGTTGTATGGGTGTTGGCAGGCAGACAGAGAGACTTGTA
CGACGAAAACGAGCTAGCAGACGGGCAAGCCAGGATAGGATTGCGAGGAG
AAGGGAATAGATTAGTTGAGGGCGAGAATCTGTTCGAAGAGCGATAATGA
TTGCGGCAAGAAGCGCCGCATGGTCGACAACGACGAAGAGAAAGGCAGGG
CTTCCGGGTACCATGTCATCGAACCGTCAAATGTACGCCTGGTAGTGAGC
GGACAGCAAACAAATTCCCAGCTCTGGCCAAAAAGGAACAATGATCGACT
CCCTCGC
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protein sequence of NO01G04620.1

>NO01G04620.1-protein ID=NO01G04620.1-protein|Name=NO01G04620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=363bp
MAAPGKLIGSHISLISNKDIRYEGILFSIDQEKSCVTLQAVKCLGTEGRT
PADGQAYPADDTLYDYILFEASDIKDLHVHDAPSTPAASAPAPKAVPASQ
QQQQQQAPPQPQQASRPPSQQQQQYQQQRPVGAGGRGAPRGGRYSTRGGG
GGRGGGRGGGIGGDRPTVSGPLPGTGGHLLNRRGKVEGASQGGPEGGEGE
FDFQEALQGFNKEEEFSKLAVNDDNTSISNNDTEAGGAGATEGGGNIEGA
TTAAVAAAVVPEVKKYNKSSFFDDLSSGQGMGGRPTLAEERKTNMDTFGV
AALHNPNNRRFGGGRGGGRGGSFRGGGGRGGGRGRGGYRGGRGGGRGYAP
AAQGGGGAPVQA*
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mRNA from alignment at chr1:1218954..1221260+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G04620.1 ID=NO01G04620.1|Name=NO01G04620.1|organism=Nannochloropsis oceanica|type=mRNA|length=2307bp|location=Sequence derived from alignment at chr1:1218954..1221260+ (Nannochloropsis oceanica)
ATGGCGGCACCGGGCAAGCTTATCGGCTCGCACATCAGCCTCATCTCCAA
CAAGGACATCCGGTACGAAGGCATACTCTTCTCTATTGACCAAGAGAAGT
CCTGCGTCACCTTGCAAGCAGTCAAGTGCCTCGGCACCGAAGGCCGGACC
CCCGCAGACGGACAGGCGTATCCGGCTGATGACACCTTGTACGATTACAT
CCTATTCGAGGCTTCGGACATCAAGGACTTGCACGTCCACGACGCCCCCT
CTACCCCAGCCGCTTCTGCTCCCGCACCCAAGGCCGTTCCTGCTTCCCAA
CAGCAGCAGCAGCAACAAGCACCGCCGCAGCCGCAACAAGCTTCGAGACC
ACCATCACAACAGCAGCAGCAGTATCAGCAGCAACGTCCAGTGGGTGCTG
GTGGTCGTGGAGCCCCAAGAGGAGGACGATACAGCACACGAGGAGGAGGA
GGAGGACGAGGAGGAGGGCGAGGGGGAGGGATTGGAGGAGATCGTCCCAC
CGTCTCCGGCCCTTTGCCTGGCACAGGCGGGCATTTATTAAACCGACGAG
GAAAGGTTGAGGGAGCGTCTCAGGGCGGACCGGAGGGAGGGGAGGGTGAG
TTTGATTTCCAAGAGGCGCTGCAGGGTTTTAATAAAGAGGAGGAGTTCTC
GAAGTTGGCTGTTAACGACGACAACACCAGCATCAGCAACAACGATACCG
AGGCAGGTGGAGCGGGAGCCACGGAGGGCGGCGGAAATATCGAGGGTGCG
ACGACGGCGGCAGTAGCAGCAGCGGTGGTTCCGGAAGTAAAGAAATATAA
CAAGAGCTCATTCTTTGACGACCTAAGCTCGGGACAAGGGATGGGAGGGC
GGCCGACCCTGGCAGAGGAGAGGAAGACGAACATGGACACGTTTGGCGTG
GCTGCGCTACACAACCCCAACAATCGTCGGTTCGGAGGAGGGAGAGGAGG
GGGCCGTGGTGGGTCTTTCAGGGGTGGGGGCGGACGGGGTGGGGGGAGGG
GTCGTGGGGGGTATAGGGGAGGGAGGGGGGGAGGGAGGGGATACGCCCCG
GCCGCCCAGGGCGGGGGAGGAGCACCGGTACAGGCTTAAGTGGAGGGAGG
AAAAGAGAAGGGGAGAGATGAGAGGGTTGGTGGTCGTGGATGGGACGAAT
GGAAGAGACGGAGGAGGAGGAGGAGGAGGAGGACGACGACGAGGACGAGA
GGAGGAGTGGAGGTAAGAGTGTCTGTACTTGGCATGCACTGCGGCGACTG
ACATCATTCGCGGGCGGGAGAATGAGGGATCACATTAAAAGGGAAGTCTT
CTTCGAGGAGAAGGAGGAGGAGGACGCACCTTAGCGAGAGGTAGGGAGAA
ACAGGGAGATAGGAGAGATCAGTACGGGAAAGTACATGCTGTGATCTGAT
GAAGAGGCAACAGAGACAACGCAAAAACACGCGCATTTATGGAGAACTTA
CGAAAAGGCTGCATCAGCAGGAGGAGCAGTAGCAGCATCATAGAAAAGCA
CATCCCCCCCCAACAAGAACGAGACAGTCAAATTTTTAAGTGCTGTCGAG
GAGGAGGAAGGGGGAGGAAGAGGAGTAGAGTCAGGAGGAATGAGGGGAGG
ATATGGAATTAAAAGATTATTTCTTTTCATACTTCGAAGGAGTAGTAGAT
GTAAGGACGACGATATAGAGAGGAGGGGGTGAGATAGGCAGAGGAAGAAG
AAAGAAGGATAACATGAAGATGGATCAGAAGGAGAAGCCCGAAGAGTAGA
AAAGAAGTATGAGAGAAGATAAAAGATGAATACGAAGAAAAGAAGGAGTG
GGGGAAAGAACGGTTGAGGCAGGGGTATGGAGACAGCAGACGGAGAACAA
ACCGTCGAAAGGGAGAGCTTGAGGGAGGGAGGGAGGGAGGGAGGGAGAGT
AGGGAACAGAGAGAGAGAAGGAAAGAACGATGGGAAGGGTGTGGTGGCTC
GGCTGGGTCGGGCAGTTCATCAGTTGAATTCTTCGGCAGGGTGGAGGCTT
GTGTGATTGTGCGTTGTATGGGTGTTGGCAGGCAGACAGAGAGACTTGTA
CGACGAAAACGAGCTAGCAGACGGGCAAGCCAGGATAGGATTGCGAGGAG
AAGGGAATAGATTAGTTGAGGGCGAGAATCTGTTCGAAGAGCGATAATGA
TTGCGGCAAGAAGCGCCGCATGGTCGACAACGACGAAGAGAAAGGCAGGG
CTTCCGGGTACCATGTCATCGAACCGTCAAATGTACGCCTGGTAGTGAGC
GGACAGCAAACAAATTCCCAGCTCTGGCCAAAAAGGAACAATGATCGACT
CCCTCGC
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Coding sequence (CDS) from alignment at chr1:1218954..1221260+

>NO01G04620.1 ID=NO01G04620.1|Name=NO01G04620.1|organism=Nannochloropsis oceanica|type=CDS|length=1089bp|location=Sequence derived from alignment at chr1:1218954..1221260+ (Nannochloropsis oceanica)
ATGGCGGCACCGGGCAAGCTTATCGGCTCGCACATCAGCCTCATCTCCAA
CAAGGACATCCGGTACGAAGGCATACTCTTCTCTATTGACCAAGAGAAGT
CCTGCGTCACCTTGCAAGCAGTCAAGTGCCTCGGCACCGAAGGCCGGACC
CCCGCAGACGGACAGGCGTATCCGGCTGATGACACCTTGTACGATTACAT
CCTATTCGAGGCTTCGGACATCAAGGACTTGCACGTCCACGACGCCCCCT
CTACCCCAGCCGCTTCTGCTCCCGCACCCAAGGCCGTTCCTGCTTCCCAA
CAGCAGCAGCAGCAACAAGCACCGCCGCAGCCGCAACAAGCTTCGAGACC
ACCATCACAACAGCAGCAGCAGTATCAGCAGCAACGTCCAGTGGGTGCTG
GTGGTCGTGGAGCCCCAAGAGGAGGACGATACAGCACACGAGGAGGAGGA
GGAGGACGAGGAGGAGGGCGAGGGGGAGGGATTGGAGGAGATCGTCCCAC
CGTCTCCGGCCCTTTGCCTGGCACAGGCGGGCATTTATTAAACCGACGAG
GAAAGGTTGAGGGAGCGTCTCAGGGCGGACCGGAGGGAGGGGAGGGTGAG
TTTGATTTCCAAGAGGCGCTGCAGGGTTTTAATAAAGAGGAGGAGTTCTC
GAAGTTGGCTGTTAACGACGACAACACCAGCATCAGCAACAACGATACCG
AGGCAGGTGGAGCGGGAGCCACGGAGGGCGGCGGAAATATCGAGGGTGCG
ACGACGGCGGCAGTAGCAGCAGCGGTGGTTCCGGAAGTAAAGAAATATAA
CAAGAGCTCATTCTTTGACGACCTAAGCTCGGGACAAGGGATGGGAGGGC
GGCCGACCCTGGCAGAGGAGAGGAAGACGAACATGGACACGTTTGGCGTG
GCTGCGCTACACAACCCCAACAATCGTCGGTTCGGAGGAGGGAGAGGAGG
GGGCCGTGGTGGGTCTTTCAGGGGTGGGGGCGGACGGGGTGGGGGGAGGG
GTCGTGGGGGGTATAGGGGAGGGAGGGGGGGAGGGAGGGGATACGCCCCG
GCCGCCCAGGGCGGGGGAGGAGCACCGGTACAGGCTTAA
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Synonyms
Publications