NO01G04590.1, NO01G04590.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G04590.1
Unique NameNO01G04590.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1212
Alignment locationchr1:1213263..1214962 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1213263..1214962 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G04590.1 vs.
Match: EWM29349.1 (conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 354.4 bits (908), Expect = 4.800e-94
Identity = 187/287 (65.16%), Postives = 219/287 (76.31%), Query Frame = 0 
Query:    1 MSPPLTSRRAPARPQSNAFVVLTLLILLVHLSLVADGWRFGL------------NRLQPPSPSSSPRRPRGDLLAAAAASASSSSGGGGGTATVSKGEGGAADSGGVVSVQQVFVCTNRWCMQRGAGATMGSFIGLTPYGSQMRVQGVDCLGRCNKGPNIRLLKSNGTFEELSYIDSVEKVYDVFTSQLGISINQSSADCLKLNFQGNAHLDKNEVDQAIGCYDKAIPLSHKGQEGVLRVMRSTAYLQRAYTHFMQFRELVDQIAQPLPDQAVFGLLERVHASSPFL 276
            MSP  +S R+   P   A  V+++L LL+HLSLVA G+  G             +   PP P  + RR RG++    +++A   + G  G ++       +   G  V+VQQVF+CT+RWCMQRGAGATMGSFIGLTPYGS++RVQGVDCLGRCN+GPN+RLL+SNGTFEELSY+DSV+KVYDVFTSQLGI INQSSADCLKLNFQGNAHLDKNEVD+AI CYDKAIPLSH+GQEGVLRVMRSTAYLQRAYTHFMQFRELV+Q AQPLPDQA    L+  HASSPFL
Sbjct:   84 MSPMRSSPRSFPYPARKASFVVSVLWLLLHLSLVAHGFSPGSVIRGPRASPGCPSASSPPPPGRALRRVRGNIYVEVSSTAYPGTSGTRGGSSTPPLPASSGVRGDPVTVQQVFICTSRWCMQRGAGATMGSFIGLTPYGSKVRVQGVDCLGRCNRGPNLRLLRSNGTFEELSYVDSVDKVYDVFTSQLGIRINQSSADCLKLNFQGNAHLDKNEVDRAIECYDKAIPLSHRGQEGVLRVMRSTAYLQRAYTHFMQFRELVEQAAQPLPDQAFLAFLQATHASSPFL 370
The following BLAST results are available for this feature:
BLAST of NO01G04590.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29349.14.800e-9465.16conserved unknown protein [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G04590NO01G04590Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G04590.1NO01G04590.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G04590.1.cds1NO01G04590.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G04590.1.cds2NO01G04590.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G04590.1.cds3NO01G04590.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G04590.1 ID=NO01G04590.1|Name=NO01G04590.1|organism=Nannochloropsis oceanica|type=mRNA|length=1212bp
ATGTCACCACCGCTAACGTCAAGACGGGCGCCTGCACGCCCTCAATCAAA
CGCATTTGTCGTCCTTACCCTCCTAATCCTTCTCGTTCACTTGTCCCTCG
TCGCTGATGGCTGGCGGTTTGGTCTAAATCGGCTTCAGCCCCCTTCTCCA
TCATCATCCCCGAGACGGCCCCGCGGAGATCTCCTCGCGGCTGCAGCCGC
CTCCGCCTCAAGCAGCAGCGGCGGTGGTGGCGGGACGGCCACGGTTTCTA
AAGGAGAAGGAGGAGCAGCAGATTCAGGAGGAGTTGTGTCGGTCCAGCAG
GTGTTCGTCTGCACGAATCGATGGTGTATGCAACGAGGGGCCGGGGCGAC
GATGGGGAGCTTTATCGGCTTAACGCCATATGGGAGTCAGATGCGGGTGC
AGGGTGTTGATTGTTTAGGGAGATGTAACAAGGGCCCAAATATAAGACTC
TTGAAATCGAATGGCACCTTTGAAGAGCTGAGCTACATTGATTCGGTGGA
AAAGGTCTATGACGTGTTCACCTCCCAACTCGGTATCAGCATCAACCAAT
CCTCCGCCGACTGCCTGAAGCTCAACTTCCAAGGCAATGCCCACTTGGAC
AAAAACGAGGTCGATCAGGCTATTGGATGCTACGACAAGGCCATCCCCCT
CTCTCACAAAGGGCAGGAAGGCGTGTTACGTGTCATGCGTTCGACCGCTT
ACCTCCAAAGGGCTTACACCCACTTTATGCAATTTAGGGAGCTCGTCGAC
CAGATAGCACAGCCCCTGCCCGACCAGGCAGTCTTTGGCTTGTTGGAGCG
CGTACATGCCTCCTCCCCCTTCCTTGTTGTCCCTATTTTATCGCGCCTTA
CTCAGGTGTATGAGGCCCGGGGGCGGTTATACCGCTTGACCACGTTCCAG
TTTTCGCTGTTTGAATTCGCGGTGCATAAGGCGTGCCATGATGCACTGAC
TGCGACGCATATATTGCCGAATTTCACCAAGAGTTGGATCAGAGCAGGCC
ATGGCTTGCGGTTCCTTCGTCGATTCAAGGACGCGATCGCCTGCTACCAG
GTCGTTGTCAAGATCGATCCTTCCACCGCTAAGGAGCTAGAACAAGAAAT
AGAGCTTCTCGAAAAGGTACAGAGGTATGTGGCGAATGCACGTGAGCAGG
GAGTTTCGGAGGAAAGCCTTGTGATAACGCTGGATGCGTTGGGTGTGTTT
GCGTGTTCATGA
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protein sequence of NO01G04590.1

>NO01G04590.1-protein ID=NO01G04590.1-protein|Name=NO01G04590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=404bp
MSPPLTSRRAPARPQSNAFVVLTLLILLVHLSLVADGWRFGLNRLQPPSP
SSSPRRPRGDLLAAAAASASSSSGGGGGTATVSKGEGGAADSGGVVSVQQ
VFVCTNRWCMQRGAGATMGSFIGLTPYGSQMRVQGVDCLGRCNKGPNIRL
LKSNGTFEELSYIDSVEKVYDVFTSQLGISINQSSADCLKLNFQGNAHLD
KNEVDQAIGCYDKAIPLSHKGQEGVLRVMRSTAYLQRAYTHFMQFRELVD
QIAQPLPDQAVFGLLERVHASSPFLVVPILSRLTQVYEARGRLYRLTTFQ
FSLFEFAVHKACHDALTATHILPNFTKSWIRAGHGLRFLRRFKDAIACYQ
VVVKIDPSTAKELEQEIELLEKVQRYVANAREQGVSEESLVITLDALGVF
ACS*
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mRNA from alignment at chr1:1213263..1214962+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G04590.1 ID=NO01G04590.1|Name=NO01G04590.1|organism=Nannochloropsis oceanica|type=mRNA|length=1700bp|location=Sequence derived from alignment at chr1:1213263..1214962+ (Nannochloropsis oceanica)
ATGTCACCACCGCTAACGTCAAGACGGGCGCCTGCACGCCCTCAATCAAA
CGCATTTGTCGTCCTTACCCTCCTAATCCTTCTCGTTCACTTGTCCCTCG
TCGCTGATGGCTGGCGGTTTGGTCTAAATCGGCTTCAGCCCCCTTCTCCA
TCATCATCCCCGAGACGGCCCCGCGGAGATCTCCTCGCGGCTGCAGCCGC
CTCCGCCTCAAGCAGCAGCGGCGGTGGTGGCGGGACGGCCACGGTTTCTA
AAGGAGAAGGAGGAGCAGCAGATTCAGGAGGAGTTGTGTCGGTCCAGCAG
GTGTTCGTCTGCACGAATCGATGGTGTATGCAACGAGGGGCCGGGGCGAC
GATGGGGAGCTTTATCGGCTTAACGCCATATGGGAGTCAGATGCGGGTGC
AGGGTGTTGATTGTTTAGGGAGATGTAACAAGGGCCCAAATATAAGACTC
TTGAAATCGAATGGCACCTTTGAAGAGCTGAGCTACATTGATTCGGTGGA
AAAGGTGAGGGAAGGAGGGAGGGAGGGACGGAGGGGGGGAGAGACGGAAC
AGGGTAGAGCATGTTGTCGGTTATGGATGAAATGAAGGAGGAGCGCTGAT
GAATAGAGATACATTCTCGTCTACTACTGACGGCCATCGCCCATTTTCTC
AAACTATTCCTCCTCCCGTCCCACAATGCCCACCCCCCCCTCCCTATCAC
TCTCACACAGGTCTATGACGTGTTCACCTCCCAACTCGGTATCAGCATCA
ACCAATCCTCCGCCGACTGCCTGAAGCTCAACTTCCAAGGCAATGCCCAC
TTGGACAAAAACGAGGTCGATCAGGCTATTGGATGCTACGACAAGGCCAT
CCCCCTCTCTCACAAAGGGCAGGAAGGCGTGTTACGTGTCATGCGTTCGA
CCGCTTACCTCCAAAGGGCTTACACCCACTTTATGCAATTTAGGGAGCTC
GTCGACCAGATAGCACAGCCCCTGCCCGACCAGGCAGTCTTTGGCTTGTT
GGAGCGCGTACATGCCTCCTCCCCCTTCCTTGTTGTCCCTATTTTATCGC
GCCTTACTCAGGTGTATGAGGCCCGGGGGCGGTTATACCGCTTGACCACG
TTCCAGTTTTCGCTGTTTGAATTCGCGGTGCATAAGGCGTGCCATGATGC
ACTGACTGCGACGCATATATTGCCGAATTTCACCAAGAGTTGGATCAGAG
CAGGTAGGCTTTGGATGGTGGGTTGCGGATGTGAGTGGGGGAGGGATATC
TCGATAGGTATCTTGTCGCTTGCTCCAATGAGGCGTACTTCGATCCCTTA
TTCCACTCACCGTCTCATTCACTCGTTCTTCCATCGCTCCTACCTCTTTC
CTTCCCTTCTTTCCCTCTTTGCCCTCCCTCAGGAGGCGTACTTCGATCCC
TTATTCCACTCACCGTCTCATTCACTCGTTCTTCCATCGCTCCTACCTCT
TTCCTTCCCTTCTTTCCCTCTTTGCCCTCCCTCAGGCCATGGCTTGCGGT
TCCTTCGTCGATTCAAGGACGCGATCGCCTGCTACCAGGTCGTTGTCAAG
ATCGATCCTTCCACCGCTAAGGAGCTAGAACAAGAAATAGAGCTTCTCGA
AAAGGTACAGAGGTATGTGGCGAATGCACGTGAGCAGGGAGTTTCGGAGG
AAAGCCTTGTGATAACGCTGGATGCGTTGGGTGTGTTTGCGTGTTCATGA
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Coding sequence (CDS) from alignment at chr1:1213263..1214962+

>NO01G04590.1 ID=NO01G04590.1|Name=NO01G04590.1|organism=Nannochloropsis oceanica|type=CDS|length=1212bp|location=Sequence derived from alignment at chr1:1213263..1214962+ (Nannochloropsis oceanica)
ATGTCACCACCGCTAACGTCAAGACGGGCGCCTGCACGCCCTCAATCAAA
CGCATTTGTCGTCCTTACCCTCCTAATCCTTCTCGTTCACTTGTCCCTCG
TCGCTGATGGCTGGCGGTTTGGTCTAAATCGGCTTCAGCCCCCTTCTCCA
TCATCATCCCCGAGACGGCCCCGCGGAGATCTCCTCGCGGCTGCAGCCGC
CTCCGCCTCAAGCAGCAGCGGCGGTGGTGGCGGGACGGCCACGGTTTCTA
AAGGAGAAGGAGGAGCAGCAGATTCAGGAGGAGTTGTGTCGGTCCAGCAG
GTGTTCGTCTGCACGAATCGATGGTGTATGCAACGAGGGGCCGGGGCGAC
GATGGGGAGCTTTATCGGCTTAACGCCATATGGGAGTCAGATGCGGGTGC
AGGGTGTTGATTGTTTAGGGAGATGTAACAAGGGCCCAAATATAAGACTC
TTGAAATCGAATGGCACCTTTGAAGAGCTGAGCTACATTGATTCGGTGGA
AAAGGTCTATGACGTGTTCACCTCCCAACTCGGTATCAGCATCAACCAAT
CCTCCGCCGACTGCCTGAAGCTCAACTTCCAAGGCAATGCCCACTTGGAC
AAAAACGAGGTCGATCAGGCTATTGGATGCTACGACAAGGCCATCCCCCT
CTCTCACAAAGGGCAGGAAGGCGTGTTACGTGTCATGCGTTCGACCGCTT
ACCTCCAAAGGGCTTACACCCACTTTATGCAATTTAGGGAGCTCGTCGAC
CAGATAGCACAGCCCCTGCCCGACCAGGCAGTCTTTGGCTTGTTGGAGCG
CGTACATGCCTCCTCCCCCTTCCTTGTTGTCCCTATTTTATCGCGCCTTA
CTCAGGTGTATGAGGCCCGGGGGCGGTTATACCGCTTGACCACGTTCCAG
TTTTCGCTGTTTGAATTCGCGGTGCATAAGGCGTGCCATGATGCACTGAC
TGCGACGCATATATTGCCGAATTTCACCAAGAGTTGGATCAGAGCAGGCC
ATGGCTTGCGGTTCCTTCGTCGATTCAAGGACGCGATCGCCTGCTACCAG
GTCGTTGTCAAGATCGATCCTTCCACCGCTAAGGAGCTAGAACAAGAAAT
AGAGCTTCTCGAAAAGGTACAGAGGTATGTGGCGAATGCACGTGAGCAGG
GAGTTTCGGAGGAAAGCCTTGTGATAACGCTGGATGCGTTGGGTGTGTTT
GCGTGTTCATGA
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Synonyms
Publications