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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr1 | genome | chr1:1201751..1204120 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G04550.1 vs.
Match: EWM29386.1 (mfs transporter [Nannochloropsis gaditana]) HSP 1 Score: 724.2 bits (1868), Expect = 2.900e-205 Identity = 385/516 (74.61%), Postives = 425/516 (82.36%), Query Frame = 0
Query: 1 MTKPKAPRVAMILAACFQNLACGGLIFGWAAISSSLLIASNEEGGPALSRDAVHRLFVMATSINFTAPLLLGILLDAYGPRICSALSILLVGSGFVLFSASIPSFPTHLPAVILIAFGGPGVQSSIIHLSNLYPASKATVTSIITGSFNLSFFIFFVFDRLWNRFHFTYQEIFAGYSIVCAVAFSFSLFLWPDQPFSFQEQMLEEIVPDQASIARVGPIRAPSVFKKTSLAPPRPG-QGGLPTLSSTTTHDATATAASRENTALLKPGSAAAA---------AMDDIKEASFWEQLRSAPFVRVTVFIVVASFWANFYIGTIDIQLADGHLLSPEKQNYMVRLFTAVTTAGVLGIPIVGGLMDRYGFVTTAAVTVSMAVIYGLGIIIAQAQGGILPLVLAFIAYALFRTFLFTYFFAYLADALGFRFFGVLAGVSFFIAGCAGLLQSPLMQFGAGNCHLTLEPLSGCDSGRWSTINFYQLACLASLYVIPLMDMWAARKADAQRKVVRGKEGGRGG 507
MTKPK PR+AMILAACFQNLACGGLIFGWAAISSSLLIASNEEGGPALSRDAVHRLFVMATSINFTAPLLLG+LLDAYGPR CSALSI LVG+GFVLFSAS PS PTHLPAVILIAFGGPGVQSSIIHLSNLYPASKATVTS+ITGSFNLSFFIFF+FDRLW+RF TYQEIFAGY+ VC A SLFLWPD+PFSFQEQ LEE +PDQ + AR+GPIRAPSVFKKTS AP P GG +L S + ++E T LL GSAA +DIKEASFW QLRSAPF+RVT+FIVVASFWANFYIGTID+QLAD H+L+P KQN+MVRLFTA+TTAGVLGIP+VG LMD YGFV TA VTVSMAV+Y LGI+ Q GG LPL++AF+AYALFRTFLFTYFFAYLADALGFRFFGVLAGVSF IAG AGLLQSPLM++ G+CHLT + GCDSG+W +N YQL CLA LY+IP++D AA KA ++ G GRGG
Sbjct: 62 MTKPKVPRMAMILAACFQNLACGGLIFGWAAISSSLLIASNEEGGPALSRDAVHRLFVMATSINFTAPLLLGVLLDAYGPRFCSALSIFLVGAGFVLFSASSPSLPTHLPAVILIAFGGPGVQSSIIHLSNLYPASKATVTSVITGSFNLSFFIFFIFDRLWDRFGLTYQEIFAGYTTVCLFALLLSLFLWPDRPFSFQEQALEETLPDQLATARIGPIRAPSVFKKTSFAPTGPPLAGGSRSLPSARGGSDSKDKNAKETTGLL-GGSAALGRPTSQGGSWEEEDIKEASFWAQLRSAPFLRVTIFIVVASFWANFYIGTIDVQLADNHMLTPAKQNFMVRLFTAITTAGVLGIPVVGKLMDSYGFVATATVTVSMAVVYSLGILFEQTHGGTLPLIVAFVAYALFRTFLFTYFFAYLADALGFRFFGVLAGVSFLIAGFAGLLQSPLMEYAQGDCHLTSTAVPGCDSGKWPRLNLYQLLCLALLYLIPVLDQQAASKARTAKQA--GDRRGRGG 574
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G04550.1 ID=NO01G04550.1|Name=NO01G04550.1|organism=Nannochloropsis oceanica|type=mRNA|length=2111bp
ATGACGAAGCCCAAAGCTCCTCGGGTAGCCATGATTCTGGCTGCCTGCTT
TCAAAACTTAGCATGTGGTGGACTCATCTTCGGATGGGCCGCCATCTCCA
GCTCCCTCCTTATCGCGTCAAACGAAGAGGGAGGCCCCGCCCTAAGTCGT
GACGCCGTCCATAGGCTCTTTGTCATGGCCACTTCCATAAACTTCACCGC
TCCCCTCCTCCTCGGTATCTTGCTCGATGCGTATGGACCACGCATATGTT
CTGCCTTGAGCATCTTGCTCGTCGGGAGCGGTTTTGTCCTCTTCTCGGCC
TCCATCCCCTCTTTCCCCACTCACCTTCCAGCCGTCATTCTCATTGCCTT
TGGTGGCCCAGGAGTGCAATCGTCGATAATCCACTTGTCGAACCTCTATC
CAGCCAGCAAGGCTACCGTCACCAGTATCATTACCGGTTCCTTCAACCTC
TCCTTCTTCATCTTCTTCGTCTTCGATCGCCTGTGGAATCGCTTCCATTT
CACATACCAAGAGATATTTGCAGGGTATAGCATAGTGTGTGCTGTGGCCT
TTTCGTTCTCCCTCTTCCTATGGCCCGATCAACCCTTCTCCTTTCAAGAG
CAGATGCTGGAAGAAATCGTACCCGATCAAGCCTCCATTGCTCGCGTTGG
TCCTATCCGCGCTCCTTCCGTCTTCAAAAAAACGTCCTTGGCCCCCCCGA
GGCCAGGGCAGGGAGGGCTACCCACCCTCTCCTCCACCACCACCCATGAT
GCCACCGCCACTGCAGCTAGTCGGGAAAATACGGCGTTGCTGAAACCTGG
CTCAGCTGCAGCGGCAGCGATGGATGACATTAAGGAAGCCTCATTTTGGG
AACAACTTCGGTCGGCGCCTTTTGTGAGGGTGACAGTCTTCATCGTCGTG
GCCTCGTTTTGGGCAAATTTTTACATTGGGACGATAGATATTCAACTGGC
CGACGGGCATCTGCTTAGTCCCGAAAAACAGAACTATATGGTGCGGCTGT
TTACGGCTGTTACGACGGCTGGAGTGTTAGGAATTCCAATTGTGGGGGGG
TTGATGGACAGATACGGTTTTGTCACCACTGCTGCTGTCACTGTGTCCAT
GGCCGTGATCTACGGGCTCGGGATCATCATCGCTCAAGCTCAAGGAGGTA
TCCTCCCCCTCGTCCTTGCATTTATCGCCTATGCCTTGTTTCGGACCTTC
TTGTTTACCTATTTCTTCGCGTACCTCGCCGATGCCCTCGGCTTTCGTTT
CTTTGGTGTGCTGGCGGGGGTATCCTTTTTCATCGCCGGTTGCGCGGGTT
TGCTTCAATCCCCTCTCATGCAGTTCGGGGCGGGCAATTGTCATTTGACC
CTCGAGCCGTTATCGGGCTGTGACAGTGGGCGGTGGTCCACGATTAATTT
TTATCAACTGGCCTGCCTGGCATCATTGTATGTGATTCCATTGATGGATA
TGTGGGCAGCGCGTAAAGCGGACGCGCAGAGGAAGGTGGTAAGAGGGAAG
GAGGGGGGGAGGGGGGGGAGGCGTTGAGGTCGACGTACCAGACGGTGAGT
GGGTTGAAACAACAGCAGCCGAGAGTGGCGGCGGGTGCGACAGGAGGGAA
GGGGGGAAGGGATGGAGGCGGGGTAAGGAGGAGCGAGGTGGTTTAGAGCG
GAGGAGGGTGGAGGGAAAGACTTGGTCGTGTGTGTAGGTGGGTGTCGATG
TGTGCACGTTACTCCATTTTGGTGCTGCTGTGCAATTGAATGTGAGATCA
TGAAGAAGTAGATTGAGTTAAGATTAAGTCATTAGGAGTTGACTCCTCAT
TCTCATTCTGGTGCAGCAACACACACGAGCGGATGCCTTTTTCACACGAA
CAAGGACCACATTAATAGCGGGAATGATAGCAGTAGAAGCCGTTGGTTTC
TACGCCCAAGACGGTACAAAAAGACGTAGAAGGGCAAAGAAAGAAACGCC
TGTTGTGGGCGAGGAGAAAGGGAGCAGTATCATTTACGGGACTGAAAGCG
AAAACTCGTCCATCAATAATAAAGTCGGAGTGATCACCCTCACAGCAGCC
CACAACAGAAGCAACAGAAAGAACACAAACGCCAAATGAAAACATGTCCT
ATTTTTGCGAG back to topprotein sequence of NO01G04550.1 >NO01G04550.1-protein ID=NO01G04550.1-protein|Name=NO01G04550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=509bp
MTKPKAPRVAMILAACFQNLACGGLIFGWAAISSSLLIASNEEGGPALSR
DAVHRLFVMATSINFTAPLLLGILLDAYGPRICSALSILLVGSGFVLFSA
SIPSFPTHLPAVILIAFGGPGVQSSIIHLSNLYPASKATVTSIITGSFNL
SFFIFFVFDRLWNRFHFTYQEIFAGYSIVCAVAFSFSLFLWPDQPFSFQE
QMLEEIVPDQASIARVGPIRAPSVFKKTSLAPPRPGQGGLPTLSSTTTHD
ATATAASRENTALLKPGSAAAAAMDDIKEASFWEQLRSAPFVRVTVFIVV
ASFWANFYIGTIDIQLADGHLLSPEKQNYMVRLFTAVTTAGVLGIPIVGG
LMDRYGFVTTAAVTVSMAVIYGLGIIIAQAQGGILPLVLAFIAYALFRTF
LFTYFFAYLADALGFRFFGVLAGVSFFIAGCAGLLQSPLMQFGAGNCHLT
LEPLSGCDSGRWSTINFYQLACLASLYVIPLMDMWAARKADAQRKVVRGK
EGGRGGRR* back to topmRNA from alignment at chr1:1201751..1204120+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G04550.1 ID=NO01G04550.1|Name=NO01G04550.1|organism=Nannochloropsis oceanica|type=mRNA|length=2370bp|location=Sequence derived from alignment at chr1:1201751..1204120+ (Nannochloropsis oceanica)
ATGACGAAGCCCAAAGCTCCTCGGGTAGCCATGATTCTGGCTGCCTGCTT
TCAAAACTTAGCATGTGGTGGACTCATCTTCGGATGGGCCGCCATCTCCA
GCTCCCTCCTTATCGCGTCAAACGAAGAGGGAGGCCCCGCCCTAAGTCGT
GACGCCGTCCATAGGCTCTTTGTCATGGCCACTTCCATAAACTTCACCGC
TCCCCTCCTCCTCGGTATCTTGCTCGATGCGTATGGACCACGCATATGTT
CTGCCTTGAGCATCTTGCTCGTCGGGAGCGGTTTTGTCCTCTTCTCGGCC
TCCATCCCCTCTTTCCCCACTCACCTTCCAGCCGTCATTCTCATTGCCTT
TGGTGGCCCAGGAGTGCAATCGTCGATAATCCACTTGTCGAACCTCTATC
CAGCCAGCAAGGCTACCGTCACCAGTATCATTACCGGTTCCTTCAACCTC
TCCTTCTTCATCTTCTTCGTCTTCGATCGCCTGTGGAATCGCTTCCATTT
CACATACCAAGAGATATTTGCAGGGTATAGCATAGTGTGTGCTGTGGCCT
TTTCGTTCTCCCTCTTCCTATGGCCCGATCAACCCTTCTCCTTTCAAGAG
CAGATGCTGGAAGAAATCGTACCCGATCAAGCCTCCATTGCTCGCGTTGG
TCCTATCCGCGCTCCTTCCGTCTTCAAAAAAACGTCCTTGGCCCCCCCGA
GGCCAGGGCAGGGAGGGCTACCCACCCTCTCCTCCACCACCACCCATGAT
GCCACCGCCACTGCAGCTAGTCGGGAAAATACGGCGTTGCTGAAACCTGG
CTCAGCTGCAGCGGCAGCGATGGATGACATTAAGGAAGCCTCATTTTGGG
AACAACTTCGGTCGGCGCCTTTTGTGAGGGTGACAGTCTTCATCGTCGTG
GCCTCGTTTTGGGCAAATTTTTACATTGGGACGATAGATATTCAACTGGC
CGACGGGCATCTGCTTAGTCCCGAAAAACAGAACTATATGGTGCGGCTGT
TTACGGCTGTTACGACGGCTGGAGTGTTAGGAATTCCAATTGTGGGGGGG
TTGATGGACAGGTGGGTGGGGAGGAAAAAGAGAGAGGCAGGAAGGGAGGG
AGGGCAGAACATGTATGTTGAACTCTATCTTGATTTTATGTTTCATAGAC
TATGCACCTGTTCCTTCCTCCCTTCCTCCCGTCCTCCTCCAGAGCACGGA
TTAGGGGCCAGTGCTGCCGTTACAGTCGCTGCCCACAGCCGATTTGGGAC
AATTATCGCTCACCATCCTTTATTCCCTCTATCCCACATTCCCTACTTTC
CTGCCTTTCCTCCTCTCTAGATACGGTTTTGTCACCACTGCTGCTGTCAC
TGTGTCCATGGCCGTGATCTACGGGCTCGGGATCATCATCGCTCAAGCTC
AAGGAGGTATCCTCCCCCTCGTCCTTGCATTTATCGCCTATGCCTTGTTT
CGGACCTTCTTGTTTACCTATTTCTTCGCGTACCTCGCCGATGCCCTCGG
CTTTCGTTTCTTTGGTGTGCTGGCGGGGGTATCCTTTTTCATCGCCGGTT
GCGCGGGTTTGCTTCAATCCCCTCTCATGCAGTTCGGGGCGGGCAATTGT
CATTTGACCCTCGAGCCGTTATCGGGCTGTGACAGTGGGCGGTGGTCCAC
GATTAATTTTTATCAACTGGCCTGCCTGGCATCATTGTATGTGATTCCAT
TGATGGATATGTGGGCAGCGCGTAAAGCGGACGCGCAGAGGAAGGTGGTA
AGAGGGAAGGAGGGGGGGAGGGGGGGGAGGCGTTGAGGTCGACGTACCAG
ACGGTGAGTGGGTTGAAACAACAGCAGCCGAGAGTGGCGGCGGGTGCGAC
AGGAGGGAAGGGGGGAAGGGATGGAGGCGGGGTAAGGAGGAGCGAGGTGG
TTTAGAGCGGAGGAGGGTGGAGGGAAAGACTTGGTCGTGTGTGTAGGTGG
GTGTCGATGTGTGCACGTTACTCCATTTTGGTGCTGCTGTGCAATTGAAT
GTGAGATCATGAAGAAGTAGATTGAGTTAAGATTAAGTCATTAGGAGTTG
ACTCCTCATTCTCATTCTGGTGCAGCAACACACACGAGCGGATGCCTTTT
TCACACGAACAAGGACCACATTAATAGCGGGAATGATAGCAGTAGAAGCC
GTTGGTTTCTACGCCCAAGACGGTACAAAAAGACGTAGAAGGGCAAAGAA
AGAAACGCCTGTTGTGGGCGAGGAGAAAGGGAGCAGTATCATTTACGGGA
CTGAAAGCGAAAACTCGTCCATCAATAATAAAGTCGGAGTGATCACCCTC
ACAGCAGCCCACAACAGAAGCAACAGAAAGAACACAAACGCCAAATGAAA
ACATGTCCTATTTTTGCGAG back to topCoding sequence (CDS) from alignment at chr1:1201751..1204120+ >NO01G04550.1 ID=NO01G04550.1|Name=NO01G04550.1|organism=Nannochloropsis oceanica|type=CDS|length=1527bp|location=Sequence derived from alignment at chr1:1201751..1204120+ (Nannochloropsis oceanica)
ATGACGAAGCCCAAAGCTCCTCGGGTAGCCATGATTCTGGCTGCCTGCTT
TCAAAACTTAGCATGTGGTGGACTCATCTTCGGATGGGCCGCCATCTCCA
GCTCCCTCCTTATCGCGTCAAACGAAGAGGGAGGCCCCGCCCTAAGTCGT
GACGCCGTCCATAGGCTCTTTGTCATGGCCACTTCCATAAACTTCACCGC
TCCCCTCCTCCTCGGTATCTTGCTCGATGCGTATGGACCACGCATATGTT
CTGCCTTGAGCATCTTGCTCGTCGGGAGCGGTTTTGTCCTCTTCTCGGCC
TCCATCCCCTCTTTCCCCACTCACCTTCCAGCCGTCATTCTCATTGCCTT
TGGTGGCCCAGGAGTGCAATCGTCGATAATCCACTTGTCGAACCTCTATC
CAGCCAGCAAGGCTACCGTCACCAGTATCATTACCGGTTCCTTCAACCTC
TCCTTCTTCATCTTCTTCGTCTTCGATCGCCTGTGGAATCGCTTCCATTT
CACATACCAAGAGATATTTGCAGGGTATAGCATAGTGTGTGCTGTGGCCT
TTTCGTTCTCCCTCTTCCTATGGCCCGATCAACCCTTCTCCTTTCAAGAG
CAGATGCTGGAAGAAATCGTACCCGATCAAGCCTCCATTGCTCGCGTTGG
TCCTATCCGCGCTCCTTCCGTCTTCAAAAAAACGTCCTTGGCCCCCCCGA
GGCCAGGGCAGGGAGGGCTACCCACCCTCTCCTCCACCACCACCCATGAT
GCCACCGCCACTGCAGCTAGTCGGGAAAATACGGCGTTGCTGAAACCTGG
CTCAGCTGCAGCGGCAGCGATGGATGACATTAAGGAAGCCTCATTTTGGG
AACAACTTCGGTCGGCGCCTTTTGTGAGGGTGACAGTCTTCATCGTCGTG
GCCTCGTTTTGGGCAAATTTTTACATTGGGACGATAGATATTCAACTGGC
CGACGGGCATCTGCTTAGTCCCGAAAAACAGAACTATATGGTGCGGCTGT
TTACGGCTGTTACGACGGCTGGAGTGTTAGGAATTCCAATTGTGGGGGGG
TTGATGGACAGATACGGTTTTGTCACCACTGCTGCTGTCACTGTGTCCAT
GGCCGTGATCTACGGGCTCGGGATCATCATCGCTCAAGCTCAAGGAGGTA
TCCTCCCCCTCGTCCTTGCATTTATCGCCTATGCCTTGTTTCGGACCTTC
TTGTTTACCTATTTCTTCGCGTACCTCGCCGATGCCCTCGGCTTTCGTTT
CTTTGGTGTGCTGGCGGGGGTATCCTTTTTCATCGCCGGTTGCGCGGGTT
TGCTTCAATCCCCTCTCATGCAGTTCGGGGCGGGCAATTGTCATTTGACC
CTCGAGCCGTTATCGGGCTGTGACAGTGGGCGGTGGTCCACGATTAATTT
TTATCAACTGGCCTGCCTGGCATCATTGTATGTGATTCCATTGATGGATA
TGTGGGCAGCGCGTAAAGCGGACGCGCAGAGGAAGGTGGTAAGAGGGAAG
GAGGGGGGGAGGGGGGGGAGGCGTTGA back to top
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