NO01G04530.1, NO01G04530.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO01G04530.1
Unique Name	NO01G04530.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1788
Alignment location	chr1:1197154..1198941 -

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr1	genome	chr1:1197154..1198941 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO01G04530.1 vs.

BLAST of NO01G04530.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO01G04530	NO01G04530	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO01G04530.1	NO01G04530.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO01G04530.1.cds1	NO01G04530.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr1:1197154..1198941-
coding sequence from alignment at chr1:1197154..1198941-

mRNA sequence

>NO01G04530.1 ID=NO01G04530.1|Name=NO01G04530.1|organism=Nannochloropsis oceanica|type=mRNA|length=1788bp
ATGGGCTTGTGGTTGCTTTTCCTGACAGTGGCCAATCCCGTTGAAGTATT
GCCTTTGCCAGTAGCAGAGGGATGGAGGAAAGGTGGGAGGGAGGAAGAGA
TGCATGCAAATGTGATGAGGGTAGCCGTTGCAGCATTACGGGATTACGCG
AAATTTTGGAGGAGAAGGGAGGGAGGAGAAGGGGTGTCGTCGTCGTCGGT
GTCATGGGAAAGGGAGGGGGAAGGGGATGAGAAAAGGACACGGACGTTTT
GGTTTTCAGAAGAGGAGGAGGGAAGGACGGAGGGTAGGATGGAGGAAGGG
AGGATGAAGACCATTGATGGGCTTTCAGGGACAAGGGGGGGAGGGGAAAA
GGAGTGGAAGGTTCCTCAGTATGGTGCCCGCAGCCGCGGCCCCGGCTGTG
GTGTGGCTGGTAATAACATGCAGCACGTGTTGGAGGTCCTACGCGATGCG
ATTATACCCTTCTCCTTTCTTCCTTCTTCCGACCCGCGTTCAAAAGAGGA
GTGCCGAGCAGAAGAGGATGTATACATGAGGGAAGTGGTGCTGCCGGAGA
GAAGTCGGAGGGCCGACCCTGCCATGTTTGAGAGGGACAGGAACACAGGG
CAGTGGAATGAGGTCTCGTTGGAGGACGAGGGGGAGGACGGGGAGGAGAA
TTTGGGGAACGAAAAGGTTACCACGATGATGAAGATGGCGGCTGCAAATC
TGGCGGCGGCAGGGGCGTCGTCTTCAGCGGCGAGGCTGAGGGAGCAGCAG
GAGCAGCGGTTGAAAGCGGACTCTATCCAGAAACGAAAGGATGACTATGT
AGCCCAGGAAATGGATTTGATGCGGATGATTTTGGAGGAACGTACGGGGA
AGGATGTGGGGTTAGAGGGGCTCGGCAGCAGCAGCAGCAGCAGTAGTAGT
AGTAGTGGCATCAGCACCAGTACCAGCAACCGTGACACTCGAGAAAGTGA
GCGGGCGGTCACGATGAAGAGGCTGGAGGAGGGGAGAATGAGGGAGCAGC
TCTTGGCGGGGATGGCGCCGTCCTTCATGGAAGACGAGGAGGAGGGAGGG
AGGGAGGGAGGATTGTTCACGCACGAGAGCGGGCAGGATGACCTGGCTAC
AGAAGCAGCAGCGGCCGAGGCAGCTCAGGCCCGCGCGCTGGCAGGTGCGG
CCCTGCAGGCGAAGCGGCAGCAGCAACAAAGACAAGAGCAACAGCAGGAG
CAGCAGCTTCTCCTGCGACAAGCAGAGGAAGCCATGGCTGCGGCTGCTGC
GGCCGCAGCTGCTGTTACTGCTGCTGCAGGTATCTCCGTACCACAGCTGG
AGACGGAGCAGCAGCAGCAGCAGCAGCAGTCGTCCACGTCCCCGAATCTG
CCAAAGATAATGATGAGCATGGAAAAGGCAGACGAAGACGTTGGCAAACT
ACGGAGAACGCTCTCAGATACTTGGCCGGCTTTTCTCCAGGAGATGGGTG
AGGGAGGGAGGGGGGAACAAGAGGGTTTGTCATGGGAGAAGGCAGCAGGG
GCGCAGCAGGTCGTGACGGCGGCGGAGGAAGGGCAAACTGAAGGTCAAAG
TGAGTGGCGAGATACCGAAGAAAAGGAGCAGCAGCAGCAAGAATTCGATG
CATTTATCGGGCCGTCATTCACACCTTTTCCTCCTGAGGACTTGTCCTCA
TCAAGCTCGCGAGGGACATCTCCTCCGCCGAGCCGGCGACAGAGCTGGAC
CAGTAAAGGGGGGGGAGAGGAGGAGGAGGGAAAGGAGGAGGTGGAAAGCG
ACGGAAAAAAACATGAGTGTCGTTTATTAAGTGGATAA

protein sequence of NO01G04530.1

>NO01G04530.1-protein ID=NO01G04530.1-protein|Name=NO01G04530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=596bp
MGLWLLFLTVANPVEVLPLPVAEGWRKGGREEEMHANVMRVAVAALRDYA
KFWRRREGGEGVSSSSVSWEREGEGDEKRTRTFWFSEEEEGRTEGRMEEG
RMKTIDGLSGTRGGGEKEWKVPQYGARSRGPGCGVAGNNMQHVLEVLRDA
IIPFSFLPSSDPRSKEECRAEEDVYMREVVLPERSRRADPAMFERDRNTG
QWNEVSLEDEGEDGEENLGNEKVTTMMKMAAANLAAAGASSSAARLREQQ
EQRLKADSIQKRKDDYVAQEMDLMRMILEERTGKDVGLEGLGSSSSSSSS
SSGISTSTSNRDTRESERAVTMKRLEEGRMREQLLAGMAPSFMEDEEEGG
REGGLFTHESGQDDLATEAAAAEAAQARALAGAALQAKRQQQQRQEQQQE
QQLLLRQAEEAMAAAAAAAAAVTAAAGISVPQLETEQQQQQQQSSTSPNL
PKIMMSMEKADEDVGKLRRTLSDTWPAFLQEMGEGGRGEQEGLSWEKAAG
AQQVVTAAEEGQTEGQSEWRDTEEKEQQQQEFDAFIGPSFTPFPPEDLSS
SSSRGTSPPPSRRQSWTSKGGGEEEEGKEEVESDGKKHECRLLSG*

mRNA from alignment at chr1:1197154..1198941-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO01G04530.1 ID=NO01G04530.1|Name=NO01G04530.1|organism=Nannochloropsis oceanica|type=mRNA|length=1788bp|location=Sequence derived from alignment at chr1:1197154..1198941- (Nannochloropsis oceanica)
ATGGGCTTGTGGTTGCTTTTCCTGACAGTGGCCAATCCCGTTGAAGTATT
GCCTTTGCCAGTAGCAGAGGGATGGAGGAAAGGTGGGAGGGAGGAAGAGA
TGCATGCAAATGTGATGAGGGTAGCCGTTGCAGCATTACGGGATTACGCG
AAATTTTGGAGGAGAAGGGAGGGAGGAGAAGGGGTGTCGTCGTCGTCGGT
GTCATGGGAAAGGGAGGGGGAAGGGGATGAGAAAAGGACACGGACGTTTT
GGTTTTCAGAAGAGGAGGAGGGAAGGACGGAGGGTAGGATGGAGGAAGGG
AGGATGAAGACCATTGATGGGCTTTCAGGGACAAGGGGGGGAGGGGAAAA
GGAGTGGAAGGTTCCTCAGTATGGTGCCCGCAGCCGCGGCCCCGGCTGTG
GTGTGGCTGGTAATAACATGCAGCACGTGTTGGAGGTCCTACGCGATGCG
ATTATACCCTTCTCCTTTCTTCCTTCTTCCGACCCGCGTTCAAAAGAGGA
GTGCCGAGCAGAAGAGGATGTATACATGAGGGAAGTGGTGCTGCCGGAGA
GAAGTCGGAGGGCCGACCCTGCCATGTTTGAGAGGGACAGGAACACAGGG
CAGTGGAATGAGGTCTCGTTGGAGGACGAGGGGGAGGACGGGGAGGAGAA
TTTGGGGAACGAAAAGGTTACCACGATGATGAAGATGGCGGCTGCAAATC
TGGCGGCGGCAGGGGCGTCGTCTTCAGCGGCGAGGCTGAGGGAGCAGCAG
GAGCAGCGGTTGAAAGCGGACTCTATCCAGAAACGAAAGGATGACTATGT
AGCCCAGGAAATGGATTTGATGCGGATGATTTTGGAGGAACGTACGGGGA
AGGATGTGGGGTTAGAGGGGCTCGGCAGCAGCAGCAGCAGCAGTAGTAGT
AGTAGTGGCATCAGCACCAGTACCAGCAACCGTGACACTCGAGAAAGTGA
GCGGGCGGTCACGATGAAGAGGCTGGAGGAGGGGAGAATGAGGGAGCAGC
TCTTGGCGGGGATGGCGCCGTCCTTCATGGAAGACGAGGAGGAGGGAGGG
AGGGAGGGAGGATTGTTCACGCACGAGAGCGGGCAGGATGACCTGGCTAC
AGAAGCAGCAGCGGCCGAGGCAGCTCAGGCCCGCGCGCTGGCAGGTGCGG
CCCTGCAGGCGAAGCGGCAGCAGCAACAAAGACAAGAGCAACAGCAGGAG
CAGCAGCTTCTCCTGCGACAAGCAGAGGAAGCCATGGCTGCGGCTGCTGC
GGCCGCAGCTGCTGTTACTGCTGCTGCAGGTATCTCCGTACCACAGCTGG
AGACGGAGCAGCAGCAGCAGCAGCAGCAGTCGTCCACGTCCCCGAATCTG
CCAAAGATAATGATGAGCATGGAAAAGGCAGACGAAGACGTTGGCAAACT
ACGGAGAACGCTCTCAGATACTTGGCCGGCTTTTCTCCAGGAGATGGGTG
AGGGAGGGAGGGGGGAACAAGAGGGTTTGTCATGGGAGAAGGCAGCAGGG
GCGCAGCAGGTCGTGACGGCGGCGGAGGAAGGGCAAACTGAAGGTCAAAG
TGAGTGGCGAGATACCGAAGAAAAGGAGCAGCAGCAGCAAGAATTCGATG
CATTTATCGGGCCGTCATTCACACCTTTTCCTCCTGAGGACTTGTCCTCA
TCAAGCTCGCGAGGGACATCTCCTCCGCCGAGCCGGCGACAGAGCTGGAC
CAGTAAAGGGGGGGGAGAGGAGGAGGAGGGAAAGGAGGAGGTGGAAAGCG
ACGGAAAAAAACATGAGTGTCGTTTATTAAGTGGATAA

Coding sequence (CDS) from alignment at chr1:1197154..1198941-

>NO01G04530.1 ID=NO01G04530.1|Name=NO01G04530.1|organism=Nannochloropsis oceanica|type=CDS|length=1788bp|location=Sequence derived from alignment at chr1:1197154..1198941- (Nannochloropsis oceanica)
ATGGGCTTGTGGTTGCTTTTCCTGACAGTGGCCAATCCCGTTGAAGTATT
GCCTTTGCCAGTAGCAGAGGGATGGAGGAAAGGTGGGAGGGAGGAAGAGA
TGCATGCAAATGTGATGAGGGTAGCCGTTGCAGCATTACGGGATTACGCG
AAATTTTGGAGGAGAAGGGAGGGAGGAGAAGGGGTGTCGTCGTCGTCGGT
GTCATGGGAAAGGGAGGGGGAAGGGGATGAGAAAAGGACACGGACGTTTT
GGTTTTCAGAAGAGGAGGAGGGAAGGACGGAGGGTAGGATGGAGGAAGGG
AGGATGAAGACCATTGATGGGCTTTCAGGGACAAGGGGGGGAGGGGAAAA
GGAGTGGAAGGTTCCTCAGTATGGTGCCCGCAGCCGCGGCCCCGGCTGTG
GTGTGGCTGGTAATAACATGCAGCACGTGTTGGAGGTCCTACGCGATGCG
ATTATACCCTTCTCCTTTCTTCCTTCTTCCGACCCGCGTTCAAAAGAGGA
GTGCCGAGCAGAAGAGGATGTATACATGAGGGAAGTGGTGCTGCCGGAGA
GAAGTCGGAGGGCCGACCCTGCCATGTTTGAGAGGGACAGGAACACAGGG
CAGTGGAATGAGGTCTCGTTGGAGGACGAGGGGGAGGACGGGGAGGAGAA
TTTGGGGAACGAAAAGGTTACCACGATGATGAAGATGGCGGCTGCAAATC
TGGCGGCGGCAGGGGCGTCGTCTTCAGCGGCGAGGCTGAGGGAGCAGCAG
GAGCAGCGGTTGAAAGCGGACTCTATCCAGAAACGAAAGGATGACTATGT
AGCCCAGGAAATGGATTTGATGCGGATGATTTTGGAGGAACGTACGGGGA
AGGATGTGGGGTTAGAGGGGCTCGGCAGCAGCAGCAGCAGCAGTAGTAGT
AGTAGTGGCATCAGCACCAGTACCAGCAACCGTGACACTCGAGAAAGTGA
GCGGGCGGTCACGATGAAGAGGCTGGAGGAGGGGAGAATGAGGGAGCAGC
TCTTGGCGGGGATGGCGCCGTCCTTCATGGAAGACGAGGAGGAGGGAGGG
AGGGAGGGAGGATTGTTCACGCACGAGAGCGGGCAGGATGACCTGGCTAC
AGAAGCAGCAGCGGCCGAGGCAGCTCAGGCCCGCGCGCTGGCAGGTGCGG
CCCTGCAGGCGAAGCGGCAGCAGCAACAAAGACAAGAGCAACAGCAGGAG
CAGCAGCTTCTCCTGCGACAAGCAGAGGAAGCCATGGCTGCGGCTGCTGC
GGCCGCAGCTGCTGTTACTGCTGCTGCAGGTATCTCCGTACCACAGCTGG
AGACGGAGCAGCAGCAGCAGCAGCAGCAGTCGTCCACGTCCCCGAATCTG
CCAAAGATAATGATGAGCATGGAAAAGGCAGACGAAGACGTTGGCAAACT
ACGGAGAACGCTCTCAGATACTTGGCCGGCTTTTCTCCAGGAGATGGGTG
AGGGAGGGAGGGGGGAACAAGAGGGTTTGTCATGGGAGAAGGCAGCAGGG
GCGCAGCAGGTCGTGACGGCGGCGGAGGAAGGGCAAACTGAAGGTCAAAG
TGAGTGGCGAGATACCGAAGAAAAGGAGCAGCAGCAGCAAGAATTCGATG
CATTTATCGGGCCGTCATTCACACCTTTTCCTCCTGAGGACTTGTCCTCA
TCAAGCTCGCGAGGGACATCTCCTCCGCCGAGCCGGCGACAGAGCTGGAC
CAGTAAAGGGGGGGGAGAGGAGGAGGAGGGAAAGGAGGAGGTGGAAAGCG
ACGGAAAAAAACATGAGTGTCGTTTATTAAGTGGATAA

Synonyms

Publications