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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:1195110..1196773 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G04520.1 vs.
Match: EWM29382.1 (peroxisomal membrane protein 2 [Nannochloropsis gaditana]) HSP 1 Score: 388.3 bits (996), Expect = 2.500e-104 Identity = 192/262 (73.28%), Postives = 214/262 (81.68%), Query Frame = 0
Query: 79 HDRRTCSRM---AMLTLLACTTTAFLTPSPRQISLPLIRRPHQQRSKGTLSAVDANDLFQGYMGLIHTHPLLTKCATSACIVPLGDLSAQVIETWKAKKAALAEEKPKEDLDDMSIDWKRAVRFLIFGATLQPIWNHYYFQWFDGLIPPPADPVSMTNVLKVTLDQGIQAPIFTVIIFAYLDFLEGKNLQETKDQIKRDFWPCITTNWWVWIPITTLNYVFIPPDLRVLFVNVAFLGWCVFLSLLVNKKDEGPSSQNMTSET 338
H RR + A+L LL + AF TP+ RQ P+IRR RS+G LSAVDANDLFQGYMGLIHTHPL+TKCATSA IVPLGDLSAQ IET+KAK+ K ++ +D+ IDWKR +RFLIFGATLQPIWNHYYFQWFD LIPPP+DP+S+TNVLKV LDQGIQAPIFTV+IFAYLD LEGKNL+ETK QIKRDFWPCITTNWWVWIPIT NY F+PPDLRVLFVNVAFLGWCVFLSLLVNKKD P+SQ SE+
Sbjct: 4 HTRRDAHLLRMAAVLLLLFGGSQAFFTPA-RQSLRPVIRR--SSRSRGALSAVDANDLFQGYMGLIHTHPLITKCATSAMIVPLGDLSAQAIETYKAKQTGA---KGNDEEEDLGIDWKRVLRFLIFGATLQPIWNHYYFQWFDHLIPPPSDPISLTNVLKVALDQGIQAPIFTVVIFAYLDLLEGKNLEETKAQIKRDFWPCITTNWWVWIPITCANYAFVPPDLRVLFVNVAFLGWCVFLSLLVNKKDGEPTSQTRPSES 259
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G04520.1 ID=NO01G04520.1|Name=NO01G04520.1|organism=Nannochloropsis oceanica|type=mRNA|length=1664bp TAGTTTCTTTGGATTTGCTGCACTGAGCGTGAATGAGCAAGTGCCCTGCT GCCGATCAGGTCACCTCCAATATGAGAGTGGTGAGACGAAAGCCTCCTGA CCCGCAGTCACTGTTGTAGTATTACTTGTTACAATTACTATTTTTGTTAT TATTGCTTTTGATTCTTTGGTGAGATCGATTCAATATGGTTGAGCCACTG TATGTCCTGTCGATGGCTCGATTTCATCTGGATCTGGATTGGACTTCTGT AGTTCTTCTACAGTCGTTGCGACAGGCACAAACCACGCCGAATGGCCCAA ACACTACTGACACAAGATCCTTACGACCTTCTAACAGGCATCTAACATGC ATGCAGAATTGCAAAAACGCCGACCACTCGACTCTTCATGTCTCTGCAGT GTTTATCATCCGCGTCGACTCGAAATGCACTCCCATGGCCTCTTCCGTCC TCCTTACTCATCCATGCACAGGGCGGCAAGCACAACACCCATTCATTTTG CAGTACCATTAAATTCACCCTCACGGCTACCGTGCGTCCTCCTCTTACAC ATCACAGGCATCGACAGGCACAAAGCCATGCACGATAGAAGAACATGCAG CCGCATGGCCATGCTGACCTTGCTGGCATGCACCACCACGGCATTCTTGA CGCCCTCGCCGCGACAGATCTCGTTGCCCTTGATTCGGCGCCCCCATCAG CAGAGAAGTAAAGGCACCTTGTCGGCCGTGGATGCCAACGACTTGTTCCA GGGCTACATGGGGCTTATCCACACACACCCCTTGCTCACAAAGTGCGCGA CGAGTGCCTGCATCGTGCCTTTAGGGGACCTGTCCGCGCAGGTCATCGAG ACGTGGAAGGCGAAAAAAGCAGCTTTGGCGGAGGAGAAGCCCAAAGAGGA TCTGGACGACATGAGCATCGATTGGAAGCGAGCGGTGCGTTTCCTCATTT TTGGGGCGACTTTGCAGCCGATTTGGAACCATTACTATTTTCAGTGGTTT GACGGCTTGATCCCTCCACCTGCGGATCCAGTCAGCATGACGAATGTGTT GAAAGTCACGTTGGACCAGGGCATTCAAGCTCCAATTTTCACGGTTATCA TTTTCGCTTACCTTGACTTTCTCGAGGGCAAGAACCTGCAGGAGACGAAG GATCAGATCAAGCGGGATTTCTGGCCCTGTATCACCACGAATTGGTGGGT GTGGATCCCTATTACGACACTTAACTACGTTTTCATCCCCCCTGATCTCC GCGTTCTCTTTGTAAACGTGGCTTTCTTGGGTTGGTGTGTATTCCTTTCC TTGCTGGTAAACAAAAAGGATGAAGGACCTTCCTCGCAGAACATGACGTC TGAGACGTGAGAAGCATAGCTTTTTGTAGCCTAGGGTTGATATTCTATGT ACAAGTAGTGAGTGCGTGTGATGTGCGCAGTGTGTCATTCGTGTGCATGT TTTTTTGTTTTTTTAAAAATTGTGTGTGGGGATGACCTGTGCGTGAAGTA GGGAAAGCATCCGTAAGTACATAAAAATGTTTTGACTTCTCTAGCCTACT TAAACTTCGATAAATCTTCATTGGGGCGACTAACGAGGATATAAAGGACA ACTATAAAGAAGTATAACTAACTATTTTTATCTTGTCGCGAAGATCACAA ATAGCTGGACGGAA back to topprotein sequence of NO01G04520.1 >NO01G04520.1-protein ID=NO01G04520.1-protein|Name=NO01G04520.1|organism=Nannochloropsis oceanica|type=polypeptide|length=338bp MHAELQKRRPLDSSCLCSVYHPRRLEMHSHGLFRPPYSSMHRAASTTPIH FAVPLNSPSRLPCVLLLHITGIDRHKAMHDRRTCSRMAMLTLLACTTTAF LTPSPRQISLPLIRRPHQQRSKGTLSAVDANDLFQGYMGLIHTHPLLTKC ATSACIVPLGDLSAQVIETWKAKKAALAEEKPKEDLDDMSIDWKRAVRFL IFGATLQPIWNHYYFQWFDGLIPPPADPVSMTNVLKVTLDQGIQAPIFTV IIFAYLDFLEGKNLQETKDQIKRDFWPCITTNWWVWIPITTLNYVFIPPD LRVLFVNVAFLGWCVFLSLLVNKKDEGPSSQNMTSET* back to topmRNA from alignment at chr1:1195110..1196773- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G04520.1 ID=NO01G04520.1|Name=NO01G04520.1|organism=Nannochloropsis oceanica|type=mRNA|length=1664bp|location=Sequence derived from alignment at chr1:1195110..1196773- (Nannochloropsis oceanica) TAGTTTCTTTGGATTTGCTGCACTGAGCGTGAATGAGCAAGTGCCCTGCT
GCCGATCAGGTCACCTCCAATATGAGAGTGGTGAGACGAAAGCCTCCTGA
CCCGCAGTCACTGTTGTAGTATTACTTGTTACAATTACTATTTTTGTTAT
TATTGCTTTTGATTCTTTGGTGAGATCGATTCAATATGGTTGAGCCACTG
TATGTCCTGTCGATGGCTCGATTTCATCTGGATCTGGATTGGACTTCTGT
AGTTCTTCTACAGTCGTTGCGACAGGCACAAACCACGCCGAATGGCCCAA
ACACTACTGACACAAGATCCTTACGACCTTCTAACAGGCATCTAACATGC
ATGCAGAATTGCAAAAACGCCGACCACTCGACTCTTCATGTCTCTGCAGT
GTTTATCATCCGCGTCGACTCGAAATGCACTCCCATGGCCTCTTCCGTCC
TCCTTACTCATCCATGCACAGGGCGGCAAGCACAACACCCATTCATTTTG
CAGTACCATTAAATTCACCCTCACGGCTACCGTGCGTCCTCCTCTTACAC
ATCACAGGCATCGACAGGCACAAAGCCATGCACGATAGAAGAACATGCAG
CCGCATGGCCATGCTGACCTTGCTGGCATGCACCACCACGGCATTCTTGA
CGCCCTCGCCGCGACAGATCTCGTTGCCCTTGATTCGGCGCCCCCATCAG
CAGAGAAGTAAAGGCACCTTGTCGGCCGTGGATGCCAACGACTTGTTCCA
GGGCTACATGGGGCTTATCCACACACACCCCTTGCTCACAAAGTGCGCGA
CGAGTGCCTGCATCGTGCCTTTAGGGGACCTGTCCGCGCAGGTCATCGAG
ACGTGGAAGGCGAAAAAAGCAGCTTTGGCGGAGGAGAAGCCCAAAGAGGA
TCTGGACGACATGAGCATCGATTGGAAGCGAGCGGTGCGTTTCCTCATTT
TTGGGGCGACTTTGCAGCCGATTTGGAACCATTACTATTTTCAGTGGTTT
GACGGCTTGATCCCTCCACCTGCGGATCCAGTCAGCATGACGAATGTGTT
GAAAGTCACGTTGGACCAGGGCATTCAAGCTCCAATTTTCACGGTTATCA
TTTTCGCTTACCTTGACTTTCTCGAGGGCAAGAACCTGCAGGAGACGAAG
GATCAGATCAAGCGGGATTTCTGGCCCTGTATCACCACGAATTGGTGGGT
GTGGATCCCTATTACGACACTTAACTACGTTTTCATCCCCCCTGATCTCC
GCGTTCTCTTTGTAAACGTGGCTTTCTTGGGTTGGTGTGTATTCCTTTCC
TTGCTGGTAAACAAAAAGGATGAAGGACCTTCCTCGCAGAACATGACGTC
TGAGACGTGAGAAGCATAGCTTTTTGTAGCCTAGGGTTGATATTCTATGT
ACAAGTAGTGAGTGCGTGTGATGTGCGCAGTGTGTCATTCGTGTGCATGT
TTTTTTGTTTTTTTAAAAATTGTGTGTGGGGATGACCTGTGCGTGAAGTA
GGGAAAGCATCCGTAAGTACATAAAAATGTTTTGACTTCTCTAGCCTACT
TAAACTTCGATAAATCTTCATTGGGGCGACTAACGAGGATATAAAGGACA
ACTATAAAGAAGTATAACTAACTATTTTTATCTTGTCGCGAAGATCACAA
ATAGCTGGACGGAA back to topCoding sequence (CDS) from alignment at chr1:1195110..1196773- >NO01G04520.1 ID=NO01G04520.1|Name=NO01G04520.1|organism=Nannochloropsis oceanica|type=CDS|length=1014bp|location=Sequence derived from alignment at chr1:1195110..1196773- (Nannochloropsis oceanica) ATGCATGCAGAATTGCAAAAACGCCGACCACTCGACTCTTCATGTCTCTG CAGTGTTTATCATCCGCGTCGACTCGAAATGCACTCCCATGGCCTCTTCC GTCCTCCTTACTCATCCATGCACAGGGCGGCAAGCACAACACCCATTCAT TTTGCAGTACCATTAAATTCACCCTCACGGCTACCGTGCGTCCTCCTCTT ACACATCACAGGCATCGACAGGCACAAAGCCATGCACGATAGAAGAACAT GCAGCCGCATGGCCATGCTGACCTTGCTGGCATGCACCACCACGGCATTC TTGACGCCCTCGCCGCGACAGATCTCGTTGCCCTTGATTCGGCGCCCCCA TCAGCAGAGAAGTAAAGGCACCTTGTCGGCCGTGGATGCCAACGACTTGT TCCAGGGCTACATGGGGCTTATCCACACACACCCCTTGCTCACAAAGTGC GCGACGAGTGCCTGCATCGTGCCTTTAGGGGACCTGTCCGCGCAGGTCAT CGAGACGTGGAAGGCGAAAAAAGCAGCTTTGGCGGAGGAGAAGCCCAAAG AGGATCTGGACGACATGAGCATCGATTGGAAGCGAGCGGTGCGTTTCCTC ATTTTTGGGGCGACTTTGCAGCCGATTTGGAACCATTACTATTTTCAGTG GTTTGACGGCTTGATCCCTCCACCTGCGGATCCAGTCAGCATGACGAATG TGTTGAAAGTCACGTTGGACCAGGGCATTCAAGCTCCAATTTTCACGGTT ATCATTTTCGCTTACCTTGACTTTCTCGAGGGCAAGAACCTGCAGGAGAC GAAGGATCAGATCAAGCGGGATTTCTGGCCCTGTATCACCACGAATTGGT GGGTGTGGATCCCTATTACGACACTTAACTACGTTTTCATCCCCCCTGAT CTCCGCGTTCTCTTTGTAAACGTGGCTTTCTTGGGTTGGTGTGTATTCCT TTCCTTGCTGGTAAACAAAAAGGATGAAGGACCTTCCTCGCAGAACATGA CGTCTGAGACGTGA back to top
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