NO01G04520.1, NO01G04520.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G04520.1
Unique NameNO01G04520.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1664
Alignment locationchr1:1195110..1196773 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1195110..1196773 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO01G04520.1 vs.
Match: EWM29382.1 (peroxisomal membrane protein 2 [Nannochloropsis gaditana])

HSP 1 Score: 388.3 bits (996), Expect = 2.500e-104
Identity = 192/262 (73.28%), Postives = 214/262 (81.68%), Query Frame = 0
Query:   79 HDRRTCSRM---AMLTLLACTTTAFLTPSPRQISLPLIRRPHQQRSKGTLSAVDANDLFQGYMGLIHTHPLLTKCATSACIVPLGDLSAQVIETWKAKKAALAEEKPKEDLDDMSIDWKRAVRFLIFGATLQPIWNHYYFQWFDGLIPPPADPVSMTNVLKVTLDQGIQAPIFTVIIFAYLDFLEGKNLQETKDQIKRDFWPCITTNWWVWIPITTLNYVFIPPDLRVLFVNVAFLGWCVFLSLLVNKKDEGPSSQNMTSET 338
            H RR    +   A+L LL   + AF TP+ RQ   P+IRR    RS+G LSAVDANDLFQGYMGLIHTHPL+TKCATSA IVPLGDLSAQ IET+KAK+      K  ++ +D+ IDWKR +RFLIFGATLQPIWNHYYFQWFD LIPPP+DP+S+TNVLKV LDQGIQAPIFTV+IFAYLD LEGKNL+ETK QIKRDFWPCITTNWWVWIPIT  NY F+PPDLRVLFVNVAFLGWCVFLSLLVNKKD  P+SQ   SE+
Sbjct:    4 HTRRDAHLLRMAAVLLLLFGGSQAFFTPA-RQSLRPVIRR--SSRSRGALSAVDANDLFQGYMGLIHTHPLITKCATSAMIVPLGDLSAQAIETYKAKQTGA---KGNDEEEDLGIDWKRVLRFLIFGATLQPIWNHYYFQWFDHLIPPPSDPISLTNVLKVALDQGIQAPIFTVVIFAYLDLLEGKNLEETKAQIKRDFWPCITTNWWVWIPITCANYAFVPPDLRVLFVNVAFLGWCVFLSLLVNKKDGEPTSQTRPSES 259          
The following BLAST results are available for this feature:
BLAST of NO01G04520.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29382.12.500e-10473.28peroxisomal membrane protein 2 [Nannochloropsis ga... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G04520NO01G04520Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G04520.1NO01G04520.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G04520.1.cds1NO01G04520.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G04520.1 ID=NO01G04520.1|Name=NO01G04520.1|organism=Nannochloropsis oceanica|type=mRNA|length=1664bp
TAGTTTCTTTGGATTTGCTGCACTGAGCGTGAATGAGCAAGTGCCCTGCT
GCCGATCAGGTCACCTCCAATATGAGAGTGGTGAGACGAAAGCCTCCTGA
CCCGCAGTCACTGTTGTAGTATTACTTGTTACAATTACTATTTTTGTTAT
TATTGCTTTTGATTCTTTGGTGAGATCGATTCAATATGGTTGAGCCACTG
TATGTCCTGTCGATGGCTCGATTTCATCTGGATCTGGATTGGACTTCTGT
AGTTCTTCTACAGTCGTTGCGACAGGCACAAACCACGCCGAATGGCCCAA
ACACTACTGACACAAGATCCTTACGACCTTCTAACAGGCATCTAACATGC
ATGCAGAATTGCAAAAACGCCGACCACTCGACTCTTCATGTCTCTGCAGT
GTTTATCATCCGCGTCGACTCGAAATGCACTCCCATGGCCTCTTCCGTCC
TCCTTACTCATCCATGCACAGGGCGGCAAGCACAACACCCATTCATTTTG
CAGTACCATTAAATTCACCCTCACGGCTACCGTGCGTCCTCCTCTTACAC
ATCACAGGCATCGACAGGCACAAAGCCATGCACGATAGAAGAACATGCAG
CCGCATGGCCATGCTGACCTTGCTGGCATGCACCACCACGGCATTCTTGA
CGCCCTCGCCGCGACAGATCTCGTTGCCCTTGATTCGGCGCCCCCATCAG
CAGAGAAGTAAAGGCACCTTGTCGGCCGTGGATGCCAACGACTTGTTCCA
GGGCTACATGGGGCTTATCCACACACACCCCTTGCTCACAAAGTGCGCGA
CGAGTGCCTGCATCGTGCCTTTAGGGGACCTGTCCGCGCAGGTCATCGAG
ACGTGGAAGGCGAAAAAAGCAGCTTTGGCGGAGGAGAAGCCCAAAGAGGA
TCTGGACGACATGAGCATCGATTGGAAGCGAGCGGTGCGTTTCCTCATTT
TTGGGGCGACTTTGCAGCCGATTTGGAACCATTACTATTTTCAGTGGTTT
GACGGCTTGATCCCTCCACCTGCGGATCCAGTCAGCATGACGAATGTGTT
GAAAGTCACGTTGGACCAGGGCATTCAAGCTCCAATTTTCACGGTTATCA
TTTTCGCTTACCTTGACTTTCTCGAGGGCAAGAACCTGCAGGAGACGAAG
GATCAGATCAAGCGGGATTTCTGGCCCTGTATCACCACGAATTGGTGGGT
GTGGATCCCTATTACGACACTTAACTACGTTTTCATCCCCCCTGATCTCC
GCGTTCTCTTTGTAAACGTGGCTTTCTTGGGTTGGTGTGTATTCCTTTCC
TTGCTGGTAAACAAAAAGGATGAAGGACCTTCCTCGCAGAACATGACGTC
TGAGACGTGAGAAGCATAGCTTTTTGTAGCCTAGGGTTGATATTCTATGT
ACAAGTAGTGAGTGCGTGTGATGTGCGCAGTGTGTCATTCGTGTGCATGT
TTTTTTGTTTTTTTAAAAATTGTGTGTGGGGATGACCTGTGCGTGAAGTA
GGGAAAGCATCCGTAAGTACATAAAAATGTTTTGACTTCTCTAGCCTACT
TAAACTTCGATAAATCTTCATTGGGGCGACTAACGAGGATATAAAGGACA
ACTATAAAGAAGTATAACTAACTATTTTTATCTTGTCGCGAAGATCACAA
ATAGCTGGACGGAA
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protein sequence of NO01G04520.1

>NO01G04520.1-protein ID=NO01G04520.1-protein|Name=NO01G04520.1|organism=Nannochloropsis oceanica|type=polypeptide|length=338bp
MHAELQKRRPLDSSCLCSVYHPRRLEMHSHGLFRPPYSSMHRAASTTPIH
FAVPLNSPSRLPCVLLLHITGIDRHKAMHDRRTCSRMAMLTLLACTTTAF
LTPSPRQISLPLIRRPHQQRSKGTLSAVDANDLFQGYMGLIHTHPLLTKC
ATSACIVPLGDLSAQVIETWKAKKAALAEEKPKEDLDDMSIDWKRAVRFL
IFGATLQPIWNHYYFQWFDGLIPPPADPVSMTNVLKVTLDQGIQAPIFTV
IIFAYLDFLEGKNLQETKDQIKRDFWPCITTNWWVWIPITTLNYVFIPPD
LRVLFVNVAFLGWCVFLSLLVNKKDEGPSSQNMTSET*
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mRNA from alignment at chr1:1195110..1196773-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G04520.1 ID=NO01G04520.1|Name=NO01G04520.1|organism=Nannochloropsis oceanica|type=mRNA|length=1664bp|location=Sequence derived from alignment at chr1:1195110..1196773- (Nannochloropsis oceanica)
TAGTTTCTTTGGATTTGCTGCACTGAGCGTGAATGAGCAAGTGCCCTGCT GCCGATCAGGTCACCTCCAATATGAGAGTGGTGAGACGAAAGCCTCCTGA CCCGCAGTCACTGTTGTAGTATTACTTGTTACAATTACTATTTTTGTTAT TATTGCTTTTGATTCTTTGGTGAGATCGATTCAATATGGTTGAGCCACTG TATGTCCTGTCGATGGCTCGATTTCATCTGGATCTGGATTGGACTTCTGT AGTTCTTCTACAGTCGTTGCGACAGGCACAAACCACGCCGAATGGCCCAA ACACTACTGACACAAGATCCTTACGACCTTCTAACAGGCATCTAACATGC ATGCAGAATTGCAAAAACGCCGACCACTCGACTCTTCATGTCTCTGCAGT GTTTATCATCCGCGTCGACTCGAAATGCACTCCCATGGCCTCTTCCGTCC TCCTTACTCATCCATGCACAGGGCGGCAAGCACAACACCCATTCATTTTG CAGTACCATTAAATTCACCCTCACGGCTACCGTGCGTCCTCCTCTTACAC ATCACAGGCATCGACAGGCACAAAGCCATGCACGATAGAAGAACATGCAG CCGCATGGCCATGCTGACCTTGCTGGCATGCACCACCACGGCATTCTTGA CGCCCTCGCCGCGACAGATCTCGTTGCCCTTGATTCGGCGCCCCCATCAG CAGAGAAGTAAAGGCACCTTGTCGGCCGTGGATGCCAACGACTTGTTCCA GGGCTACATGGGGCTTATCCACACACACCCCTTGCTCACAAAGTGCGCGA CGAGTGCCTGCATCGTGCCTTTAGGGGACCTGTCCGCGCAGGTCATCGAG ACGTGGAAGGCGAAAAAAGCAGCTTTGGCGGAGGAGAAGCCCAAAGAGGA TCTGGACGACATGAGCATCGATTGGAAGCGAGCGGTGCGTTTCCTCATTT TTGGGGCGACTTTGCAGCCGATTTGGAACCATTACTATTTTCAGTGGTTT GACGGCTTGATCCCTCCACCTGCGGATCCAGTCAGCATGACGAATGTGTT GAAAGTCACGTTGGACCAGGGCATTCAAGCTCCAATTTTCACGGTTATCA TTTTCGCTTACCTTGACTTTCTCGAGGGCAAGAACCTGCAGGAGACGAAG GATCAGATCAAGCGGGATTTCTGGCCCTGTATCACCACGAATTGGTGGGT GTGGATCCCTATTACGACACTTAACTACGTTTTCATCCCCCCTGATCTCC GCGTTCTCTTTGTAAACGTGGCTTTCTTGGGTTGGTGTGTATTCCTTTCC TTGCTGGTAAACAAAAAGGATGAAGGACCTTCCTCGCAGAACATGACGTC TGAGACGTGAGAAGCATAGCTTTTTGTAGCCTAGGGTTGATATTCTATGT ACAAGTAGTGAGTGCGTGTGATGTGCGCAGTGTGTCATTCGTGTGCATGT TTTTTTGTTTTTTTAAAAATTGTGTGTGGGGATGACCTGTGCGTGAAGTA GGGAAAGCATCCGTAAGTACATAAAAATGTTTTGACTTCTCTAGCCTACT TAAACTTCGATAAATCTTCATTGGGGCGACTAACGAGGATATAAAGGACA ACTATAAAGAAGTATAACTAACTATTTTTATCTTGTCGCGAAGATCACAA ATAGCTGGACGGAA
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Coding sequence (CDS) from alignment at chr1:1195110..1196773-

>NO01G04520.1 ID=NO01G04520.1|Name=NO01G04520.1|organism=Nannochloropsis oceanica|type=CDS|length=1014bp|location=Sequence derived from alignment at chr1:1195110..1196773- (Nannochloropsis oceanica)
ATGCATGCAGAATTGCAAAAACGCCGACCACTCGACTCTTCATGTCTCTG
CAGTGTTTATCATCCGCGTCGACTCGAAATGCACTCCCATGGCCTCTTCC
GTCCTCCTTACTCATCCATGCACAGGGCGGCAAGCACAACACCCATTCAT
TTTGCAGTACCATTAAATTCACCCTCACGGCTACCGTGCGTCCTCCTCTT
ACACATCACAGGCATCGACAGGCACAAAGCCATGCACGATAGAAGAACAT
GCAGCCGCATGGCCATGCTGACCTTGCTGGCATGCACCACCACGGCATTC
TTGACGCCCTCGCCGCGACAGATCTCGTTGCCCTTGATTCGGCGCCCCCA
TCAGCAGAGAAGTAAAGGCACCTTGTCGGCCGTGGATGCCAACGACTTGT
TCCAGGGCTACATGGGGCTTATCCACACACACCCCTTGCTCACAAAGTGC
GCGACGAGTGCCTGCATCGTGCCTTTAGGGGACCTGTCCGCGCAGGTCAT
CGAGACGTGGAAGGCGAAAAAAGCAGCTTTGGCGGAGGAGAAGCCCAAAG
AGGATCTGGACGACATGAGCATCGATTGGAAGCGAGCGGTGCGTTTCCTC
ATTTTTGGGGCGACTTTGCAGCCGATTTGGAACCATTACTATTTTCAGTG
GTTTGACGGCTTGATCCCTCCACCTGCGGATCCAGTCAGCATGACGAATG
TGTTGAAAGTCACGTTGGACCAGGGCATTCAAGCTCCAATTTTCACGGTT
ATCATTTTCGCTTACCTTGACTTTCTCGAGGGCAAGAACCTGCAGGAGAC
GAAGGATCAGATCAAGCGGGATTTCTGGCCCTGTATCACCACGAATTGGT
GGGTGTGGATCCCTATTACGACACTTAACTACGTTTTCATCCCCCCTGAT
CTCCGCGTTCTCTTTGTAAACGTGGCTTTCTTGGGTTGGTGTGTATTCCT
TTCCTTGCTGGTAAACAAAAAGGATGAAGGACCTTCCTCGCAGAACATGA
CGTCTGAGACGTGA
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Synonyms
Publications