NO01G04510.1, NO01G04510.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO01G04510.1
Unique Name	NO01G04510.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1743
Alignment location	chr1:1192158..1194249 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr1	genome	chr1:1192158..1194249 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO01G04510.1 vs.
Match: XP_005855475.1 (carrier protein [Nannochloropsis gaditana CCMP526]; EKU20877.1 carrier protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 979.9 bits (2532), Expect = 3.300e-282
Identity = 510/580 (87.93%), Postives = 541/580 (93.28%), Query Frame = 0

Query:    1 MAPVPRCSVFIVLLTLAFLCVVTQGALPKIPGTNLVQRFIKGKQADPRDHAPDAAMSEEDFHQATAPVLAEDITEAISKPQRRRKRDMVKSRFGKIRATVFPIENKECRKFFMMSGMMFFIIYVYTVVRDTKDTLIVSSCGAEAITFLKVYGVLPASALFMVAYAKASNALSKKTLFYATSAPFFIFYAVFCTLIYPNRNLLMPNIPAQAGGLGFMISLVKNWDYSLFYVVSELFGSVGVSVLFWQLANEIIKVDEAKRFYPLFGQLANIAPIAAGQTVVLSSHMTDPMSKDPFLKSIQLITVFIMISGAAIMALYKGITTLVDQENAAASAKGGEGTASASAVASKKKRKPKMSLGESFKFLLTNRYLACMAILVVSYGLAINFTEVMWKSQVKLLYQDKRKYQQFMGNYSTMMGATTFVVIFFGSQIVKTFGMKVGALTTPIMLGLLAAPFFGYIIFGGISSKGVSSPKALQTAVWVGLVQNILSKSIKYALFDPTKEMAYIPLGQEEKTKGKAAIDVLAARIGKSGGALLQQAIVLFFGNIIDGAPVVVGLFYIVIFAWLFAANSLGNQFEEVSKNK 581
            M+ V RC  F +LL+LA LC ++ GALPK+PGT LVQRFIKG+QADPRDH  D A SEEDFHQATAPVLAEDI EAI KP RRRKRD+V+SRFGKIRA VFPIENKEC+KFFMMSGMMFFIIYVYTVVRDTKDTLIVS+CGAEAITFLKVYGVLPASALFM+ YAKASN L KK LFYATS PFF+FYA FCTLIYPNR  LMP+I AQAGGLGF++SLVKNWDYSLFY+VSELFGSVGVSVLFWQLANEIIKV EAKRFYPLFGQLANIAPIAAGQTVVLS+HMTDP SKDPFLKSIQLITVFIMISGAAIM+LY+GIT LV++E+AAA A GGE +AS +AVASK+K+KPKMSL ESFKFLLTN+YL CMAILVVSYGLAINFTEVMWKSQVKLLY+DKRKYQQFMGNYSTMMGATTF+VIFFGSQIVK FGMKVGALTTP MLGLLAAPFFGYI+FGGISS G SSPKALQTAVWVGLVQNILSKSIKYALFDPTKEMAYIPLGQEEKTKGKAAIDVLAARIGKSGGALLQQAIVLFFGNIIDGAPVVVGLFYIVIFAWLFAANSLGNQFEEVSKNK
Sbjct:    2 MSAVSRCKGFYLLLSLAILCNLSHGALPKLPGTALVQRFIKGRQADPRDHGADIASSEEDFHQATAPVLAEDIAEAI-KPPRRRKRDVVRSRFGKIRAAVFPIENKECQKFFMMSGMMFFIIYVYTVVRDTKDTLIVSTCGAEAITFLKVYGVLPASALFMILYAKASNVLGKKALFYATSVPFFLFYAAFCTLIYPNRAHLMPHIDAQAGGLGFLVSLVKNWDYSLFYIVSELFGSVGVSVLFWQLANEIIKVHEAKRFYPLFGQLANIAPIAAGQTVVLSAHMTDPASKDPFLKSIQLITVFIMISGAAIMSLYRGITGLVEREDAAALAVGGETSASTTAVASKRKKKPKMSLAESFKFLLTNKYLGCMAILVVSYGLAINFTEVMWKSQVKLLYKDKRKYQQFMGNYSTMMGATTFIVIFFGSQIVKRFGMKVGALTTPAMLGLLAAPFFGYIVFGGISSTGASSPKALQTAVWVGLVQNILSKSIKYALFDPTKEMAYIPLGQEEKTKGKAAIDVLAARIGKSGGALLQQAIVLFFGNIIDGAPVVVGLFYIVIFAWLFAANSLGNQFEEVSKNK 580

The following BLAST results are available for this feature:

BLAST of NO01G04510.1 vs.

BLAST of NO01G04510.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
XP_005855475.1	3.300e-282	87.93	carrier protein [Nannochloropsis gaditana CCMP526]...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO01G04510	NO01G04510	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO01G04510.1	NO01G04510.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO01G04510.1.cds1	NO01G04510.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G04510.1.cds2	NO01G04510.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G04510.1.cds3	NO01G04510.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr1:1192158..1194249-
coding sequence from alignment at chr1:1192158..1194249-

mRNA sequence

>NO01G04510.1 ID=NO01G04510.1|Name=NO01G04510.1|organism=Nannochloropsis oceanica|type=mRNA|length=1743bp
ATGGCACCCGTACCACGATGCAGTGTCTTCATAGTACTGCTGACTCTTGC
GTTTCTCTGCGTAGTGACCCAAGGAGCCCTCCCCAAAATTCCCGGCACCA
ATCTTGTGCAGCGCTTTATCAAGGGCAAGCAGGCTGACCCCCGTGACCAT
GCCCCCGACGCAGCCATGTCAGAGGAGGACTTCCACCAGGCCACGGCTCC
GGTGCTGGCAGAAGATATCACCGAGGCCATTTCCAAGCCACAACGCCGCA
GGAAACGCGACATGGTCAAGTCCCGCTTTGGCAAGATCCGTGCCACGGTA
TTTCCGATCGAAAACAAGGAATGCCGCAAGTTTTTTATGATGAGCGGGAT
GATGTTTTTTATTATCTACGTTTACACGGTTGTCCGTGACACGAAGGACA
CGCTCATCGTCTCGTCCTGCGGGGCCGAAGCCATTACATTCCTCAAGGTT
TACGGGGTGTTGCCTGCCTCGGCCTTGTTCATGGTTGCGTATGCCAAAGC
ATCGAATGCACTGAGTAAAAAGACATTATTCTATGCGACATCCGCTCCCT
TCTTCATTTTTTATGCGGTGTTCTGCACGCTGATCTACCCGAATCGTAAC
CTGTTGATGCCGAACATTCCCGCGCAAGCAGGGGGGTTGGGGTTTATGAT
TTCTCTGGTCAAGAATTGGGATTATTCCTTGTTCTATGTCGTGTCCGAGT
TGTTCGGGAGTGTGGGTGTCTCGGTGCTCTTCTGGCAGCTCGCGAACGAG
ATCATTAAGGTGGACGAAGCTAAGCGTTTTTATCCTCTATTTGGTCAGCT
GGCCAATATTGCGCCTATTGCTGCAGGGCAGACGGTTGTGCTATCTTCGC
ACATGACTGACCCTATGAGTAAAGACCCTTTCCTGAAGAGCATTCAGTTA
ATTACTGTCTTTATTATGATCTCGGGGGCGGCGATTATGGCCCTATACAA
GGGGATTACCACGCTGGTGGACCAGGAGAACGCGGCAGCGAGTGCAAAAG
GGGGTGAGGGGACCGCGTCAGCCTCGGCTGTGGCGAGCAAGAAGAAGAGA
AAGCCCAAGATGAGCCTGGGGGAAAGCTTTAAGTTCCTGCTGACCAACCG
GTATTTGGCGTGTATGGCGATCCTGGTGGTGTCGTATGGCCTGGCCATCA
ATTTCACCGAGGTCATGTGGAAGAGCCAAGTGAAGCTCCTCTACCAAGAC
AAGCGAAAGTACCAGCAGTTCATGGGCAACTATTCCACGATGATGGGAGC
CACCACCTTCGTCGTCATCTTCTTTGGGTCGCAAATCGTCAAGACTTTTG
GAATGAAAGTTGGAGCCTTGACCACTCCCATCATGCTTGGCTTGTTGGCT
GCACCCTTTTTCGGGTACATTATATTTGGTGGAATTTCGAGCAAGGGAGT
ATCGTCACCCAAGGCCCTGCAGACAGCGGTGTGGGTTGGATTGGTCCAGA
ATATCTTGTCGAAATCGATTAAGTATGCTTTGTTTGATCCCACCAAGGAG
ATGGCTTACATCCCCTTGGGGCAGGAGGAGAAGACCAAGGGCAAGGCCGC
GATTGATGTGCTGGCGGCGCGTATCGGGAAGAGTGGTGGGGCGCTGTTAC
AGCAGGCGATTGTCCTCTTCTTTGGGAATATCATTGATGGGGCCCCAGTG
GTGGTGGGCCTGTTTTATATCGTCATTTTTGCCTGGCTGTTCGCCGCCAA
TTCATTGGGCAACCAATTCGAAGAGGTGTCCAAAAATAAGTAA

protein sequence of NO01G04510.1

>NO01G04510.1-protein ID=NO01G04510.1-protein|Name=NO01G04510.1|organism=Nannochloropsis oceanica|type=polypeptide|length=581bp
MAPVPRCSVFIVLLTLAFLCVVTQGALPKIPGTNLVQRFIKGKQADPRDH
APDAAMSEEDFHQATAPVLAEDITEAISKPQRRRKRDMVKSRFGKIRATV
FPIENKECRKFFMMSGMMFFIIYVYTVVRDTKDTLIVSSCGAEAITFLKV
YGVLPASALFMVAYAKASNALSKKTLFYATSAPFFIFYAVFCTLIYPNRN
LLMPNIPAQAGGLGFMISLVKNWDYSLFYVVSELFGSVGVSVLFWQLANE
IIKVDEAKRFYPLFGQLANIAPIAAGQTVVLSSHMTDPMSKDPFLKSIQL
ITVFIMISGAAIMALYKGITTLVDQENAAASAKGGEGTASASAVASKKKR
KPKMSLGESFKFLLTNRYLACMAILVVSYGLAINFTEVMWKSQVKLLYQD
KRKYQQFMGNYSTMMGATTFVVIFFGSQIVKTFGMKVGALTTPIMLGLLA
APFFGYIIFGGISSKGVSSPKALQTAVWVGLVQNILSKSIKYALFDPTKE
MAYIPLGQEEKTKGKAAIDVLAARIGKSGGALLQQAIVLFFGNIIDGAPV
VVGLFYIVIFAWLFAANSLGNQFEEVSKNK*

mRNA from alignment at chr1:1192158..1194249-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO01G04510.1 ID=NO01G04510.1|Name=NO01G04510.1|organism=Nannochloropsis oceanica|type=mRNA|length=2092bp|location=Sequence derived from alignment at chr1:1192158..1194249- (Nannochloropsis oceanica)
ATGGCACCCGTACCACGATGCAGTGTCTTCATAGTACTGCTGACTCTTGC
GTTTCTCTGCGTAGTGACCCAAGGAGCCCTCCCCAAAATTCCCGGCACCA
ATCTTGTGCAGCGCTTTATCAAGGGCAAGCAGGCTGACCCCCGTGACCAT
GCCCCCGACGCAGCCATGTCAGAGGAGGACTTCCACCAGGCCACGGCTCC
GGTGCTGGCAGAAGATATCACCGAGGCCATTTCCAAGCCACAACGCCGCA
GGTATGATTGGAGGGATGGGCAAGACGGGGGACACAGGGTGGGCGATAGG
AGGGCTTCCCTCCCTAAGCACTGCATTACGCATGTGTTGGAGAGCCACAC
ATGGACGCCTATTAAACCACCCCGAATTTCCATCACATGTTCCTGCCTCT
CAATCCATACTTATACAACCTACTCCCTATAATTCCCTCCTCCTTCCCTC
CCTAGGAAACGCGACATGGTCAAGTCCCGCTTTGGCAAGATCCGTGCCAC
GGTATTTCCGATCGAAAACAAGGAATGCCGCAAGTTTTTTATGATGAGCG
GGATGATGTTTTTTATTATCTACGTTTACACGGTTGTCCGTGACACGAAG
GACACGCTCATCGTCTCGTCCTGCGGGGCCGAAGCCATTACATTCCTCAA
GGTTTACGGGGTGTTGCCTGCCTCGGCCTTGTTCATGGTTGCGTATGCCA
AAGCATCGAATGCACTGAGTAAAAAGACATTATTCTATGCGACATCCGCT
CCCTTCTTCATTTTTTATGCGGTGTTCTGCACGCTGATCTACCCGAATCG
TAACCTGTTGATGCCGAACATTCCCGCGCAAGCAGGGGGGTTGGGGTTTA
TGATTTCTCTGGTCAAGAATTGGGATTATTCCTTGTTCTATGTCGTGTCC
GAGTTGTTCGGGAGTGTGGGTGTCTCGGTGCTCTTCTGGCAGCTCGCGAA
CGAGATCATTAAGGTGGACGAAGCTAAGCGTTTTTATCCTCTATTTGGTC
AGCTGGCCAATATTGCGCCTATTGCTGCAGGGCAGACGGTTGTGCTATCT
TCGCACATGACTGACCCTATGAGTAAAGACCCTTTCCTGAAGAGCATTCA
GTTAATTACTGTCTTTATTATGATCTCGGGGGCGGCGATTATGGCCCTAT
ACAAGGGGATTACCACGCTGGTGGACCAGGAGAACGCGGCAGCGAGTGCA
AAAGGGGGTGAGGGGACCGCGTCAGCCTCGGCTGTGGCGAGCAAGAAGAA
GAGAAAGCCCAAGATGAGCCTGGGGGAAAGCTTTAAGTTCCTGCTGACCA
ACCGGTATTTGGCGTGTATGGCGATCCTGGTGGTGTCGTATGGCCTGGCC
ATCAATTTCACCGAGGTGAGGAAGGAAGGAGGGAGGGAGGGGAGGAAAGG
ATGGACACGTTTGGTTGTTGTTGTAATTTATAGAAAAGAAACATTCCTTC
TCACACACTGACACACCCACCCCTCCCACCCACTTTCCCTCCTTTCCTCC
CCTCCCGCAGGTCATGTGGAAGAGCCAAGTGAAGCTCCTCTACCAAGACA
AGCGAAAGTACCAGCAGTTCATGGGCAACTATTCCACGATGATGGGAGCC
ACCACCTTCGTCGTCATCTTCTTTGGGTCGCAAATCGTCAAGACTTTTGG
AATGAAAGTTGGAGCCTTGACCACTCCCATCATGCTTGGCTTGTTGGCTG
CACCCTTTTTCGGGTACATTATATTTGGTGGAATTTCGAGCAAGGGAGTA
TCGTCACCCAAGGCCCTGCAGACAGCGGTGTGGGTTGGATTGGTCCAGAA
TATCTTGTCGAAATCGATTAAGTATGCTTTGTTTGATCCCACCAAGGAGA
TGGCTTACATCCCCTTGGGGCAGGAGGAGAAGACCAAGGGCAAGGCCGCG
ATTGATGTGCTGGCGGCGCGTATCGGGAAGAGTGGTGGGGCGCTGTTACA
GCAGGCGATTGTCCTCTTCTTTGGGAATATCATTGATGGGGCCCCAGTGG
TGGTGGGCCTGTTTTATATCGTCATTTTTGCCTGGCTGTTCGCCGCCAAT
TCATTGGGCAACCAATTCGAAGAGGTGTCCAAAAATAAGTAA

Coding sequence (CDS) from alignment at chr1:1192158..1194249-

>NO01G04510.1 ID=NO01G04510.1|Name=NO01G04510.1|organism=Nannochloropsis oceanica|type=CDS|length=1743bp|location=Sequence derived from alignment at chr1:1192158..1194249- (Nannochloropsis oceanica)
ATGGCACCCGTACCACGATGCAGTGTCTTCATAGTACTGCTGACTCTTGC
GTTTCTCTGCGTAGTGACCCAAGGAGCCCTCCCCAAAATTCCCGGCACCA
ATCTTGTGCAGCGCTTTATCAAGGGCAAGCAGGCTGACCCCCGTGACCAT
GCCCCCGACGCAGCCATGTCAGAGGAGGACTTCCACCAGGCCACGGCTCC
GGTGCTGGCAGAAGATATCACCGAGGCCATTTCCAAGCCACAACGCCGCA
GGAAACGCGACATGGTCAAGTCCCGCTTTGGCAAGATCCGTGCCACGGTA
TTTCCGATCGAAAACAAGGAATGCCGCAAGTTTTTTATGATGAGCGGGAT
GATGTTTTTTATTATCTACGTTTACACGGTTGTCCGTGACACGAAGGACA
CGCTCATCGTCTCGTCCTGCGGGGCCGAAGCCATTACATTCCTCAAGGTT
TACGGGGTGTTGCCTGCCTCGGCCTTGTTCATGGTTGCGTATGCCAAAGC
ATCGAATGCACTGAGTAAAAAGACATTATTCTATGCGACATCCGCTCCCT
TCTTCATTTTTTATGCGGTGTTCTGCACGCTGATCTACCCGAATCGTAAC
CTGTTGATGCCGAACATTCCCGCGCAAGCAGGGGGGTTGGGGTTTATGAT
TTCTCTGGTCAAGAATTGGGATTATTCCTTGTTCTATGTCGTGTCCGAGT
TGTTCGGGAGTGTGGGTGTCTCGGTGCTCTTCTGGCAGCTCGCGAACGAG
ATCATTAAGGTGGACGAAGCTAAGCGTTTTTATCCTCTATTTGGTCAGCT
GGCCAATATTGCGCCTATTGCTGCAGGGCAGACGGTTGTGCTATCTTCGC
ACATGACTGACCCTATGAGTAAAGACCCTTTCCTGAAGAGCATTCAGTTA
ATTACTGTCTTTATTATGATCTCGGGGGCGGCGATTATGGCCCTATACAA
GGGGATTACCACGCTGGTGGACCAGGAGAACGCGGCAGCGAGTGCAAAAG
GGGGTGAGGGGACCGCGTCAGCCTCGGCTGTGGCGAGCAAGAAGAAGAGA
AAGCCCAAGATGAGCCTGGGGGAAAGCTTTAAGTTCCTGCTGACCAACCG
GTATTTGGCGTGTATGGCGATCCTGGTGGTGTCGTATGGCCTGGCCATCA
ATTTCACCGAGGTCATGTGGAAGAGCCAAGTGAAGCTCCTCTACCAAGAC
AAGCGAAAGTACCAGCAGTTCATGGGCAACTATTCCACGATGATGGGAGC
CACCACCTTCGTCGTCATCTTCTTTGGGTCGCAAATCGTCAAGACTTTTG
GAATGAAAGTTGGAGCCTTGACCACTCCCATCATGCTTGGCTTGTTGGCT
GCACCCTTTTTCGGGTACATTATATTTGGTGGAATTTCGAGCAAGGGAGT
ATCGTCACCCAAGGCCCTGCAGACAGCGGTGTGGGTTGGATTGGTCCAGA
ATATCTTGTCGAAATCGATTAAGTATGCTTTGTTTGATCCCACCAAGGAG
ATGGCTTACATCCCCTTGGGGCAGGAGGAGAAGACCAAGGGCAAGGCCGC
GATTGATGTGCTGGCGGCGCGTATCGGGAAGAGTGGTGGGGCGCTGTTAC
AGCAGGCGATTGTCCTCTTCTTTGGGAATATCATTGATGGGGCCCCAGTG
GTGGTGGGCCTGTTTTATATCGTCATTTTTGCCTGGCTGTTCGCCGCCAA
TTCATTGGGCAACCAATTCGAAGAGGTGTCCAAAAATAAGTAA

Synonyms

Publications