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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:1190349..1191737 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G04500.1 vs.
Match: XP_005855476.1 (phosphoserine aminotransferase [Nannochloropsis gaditana CCMP526]; EKU20878.1 phosphoserine aminotransferase [Nannochloropsis gaditana CCMP526]; EWM29354.1 phosphoserine aminotransferase [Nannochloropsis gaditana]) HSP 1 Score: 632.9 bits (1631), Expect = 7.900e-178 Identity = 301/439 (68.56%), Postives = 355/439 (80.87%), Query Frame = 0
Query: 23 WQQQPTTIATLLLALIYSAHAYIPLPRRPMTPKPSSPHFSSGPTKKRPGYSLGNIPINTLGRSHRSPECLARIRLALDLTRDILGIPVDYRLALLPGGGDTGAYEASLWSLVGAEGVPVEALVWDAFSSGWHDDLVNQLRIKKVRENSAPYGELPDLSRVNAKDHDVCFVWNGTTSGVCLPDDGAPWIPSPGPGRGRGLTVCDATSACFCMRLPWDKLDVTTFSWQKALGGEGAHGMMVLSPRALARLEDNAQSGLLSSRQIPKLLRLAGDVKTGLVPDGLWEGSTINTPSMLCLEDYLDALSWVQREGGLDGMIARSRANLAAVEEFVEGRPWLSFLAKDKRTRSSTSICLEVGGWGGHVVGEGGREGGNGYSKKKVAEQLKTMVRLLEEEDLAYDIASYRDAPSGLRVWGGPTVEREDVERLMPWIAWAYEHVKATT 462
W + A LL+A +Y A AY+P+ P PKPSSPHFSSGPTKKRPGY L +PI+TLGRSHRS ECL RI+ AL+LTRDILGIP ++RLALLPGGGDTGA+EA+LWSLVG +GVPV+ALVW+AF GW+DDL QL++++V SAPYGELPDLS+V+A ++DVCFV+NGTTSGVCLPDDGAPWIP G G+GRGLT+CDATSACFCM LPW+KLDVTTFSWQKALGGEGAHG++VLSPRALARLE+N +SGLL++R IPKLLRLA D TG VP+GLW GSTINTPSMLC+EDYLDAL W Q +GGL +IAR+RANL AVE FV +PWLSFLA + R RSSTSICL + G G R GG+ +V +LK M L+E E +AYDIASYR+AP GLR+WGGPTVE ED+ RL+PWI WAY+ VK T+
Sbjct: 12 WIKNWFITAALLIAFLYCAEAYVPVGP-PAMPKPSSPHFSSGPTKKRPGYDLAKLPIDTLGRSHRSSECLGRIQRALELTRDILGIPGEFRLALLPGGGDTGAFEAALWSLVGTKGVPVQALVWEAFGQGWYDDLTTQLKVEEVELVSAPYGELPDLSQVSAGENDVCFVYNGTTSGVCLPDDGAPWIPPSGAGKGRGLTLCDATSACFCMPLPWEKLDVTTFSWQKALGGEGAHGILVLSPRALARLEENGRSGLLAARGIPKLLRLAPDPSTGTVPEGLWTGSTINTPSMLCVEDYLDALQWAQEKGGLPALIARTRANLEAVEAFVAKKPWLSFLASNPRIRSSTSICLRIEGL--EEAGSTARGGGS-----QVRHRLKEMAALMEREGVAYDIASYREAPPGLRIWGGPTVETEDIRRLLPWIEWAYDRVKTTS 442
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G04500.1 ID=NO01G04500.1|Name=NO01G04500.1|organism=Nannochloropsis oceanica|type=mRNA|length=1389bp ATGCCTGCCCAACTCTTGCCACCGCAGCAACCCACGTCACGTCTCCGTCG ACGACCGAGACCCGGGTGGCAGCAGCAGCCCACGACGATCGCGACTTTGC TCCTGGCCTTGATATATTCCGCGCACGCGTACATCCCTCTCCCACGCCGC CCTATGACACCCAAGCCCTCTAGCCCGCACTTCAGTTCCGGACCCACCAA AAAACGCCCCGGCTACTCCCTCGGCAACATACCCATTAACACGCTCGGCC GCTCACACCGCTCCCCCGAGTGCCTGGCACGTATTCGATTGGCACTTGAT CTCACCCGCGACATACTTGGCATTCCCGTGGACTATCGCCTGGCCTTGCT CCCTGGCGGTGGCGACACGGGTGCCTATGAAGCATCGCTGTGGTCATTAG TGGGGGCAGAAGGCGTGCCTGTTGAAGCCTTGGTATGGGATGCATTTAGC AGTGGCTGGCACGACGACTTGGTCAACCAACTTCGCATAAAAAAGGTCCG GGAAAATTCGGCGCCTTACGGTGAGCTCCCGGATTTGTCAAGGGTAAATG CTAAAGACCATGACGTGTGCTTTGTTTGGAATGGCACCACCAGCGGGGTC TGCCTCCCCGATGACGGTGCGCCTTGGATTCCTTCACCAGGTCCTGGAAG AGGAAGAGGGCTCACGGTATGTGATGCGACCTCGGCCTGTTTCTGCATGA GATTGCCGTGGGACAAGTTAGATGTGACGACTTTCTCCTGGCAAAAAGCC CTCGGTGGGGAAGGAGCACATGGAATGATGGTCCTGTCACCTCGGGCGTT GGCAAGGCTGGAAGACAATGCACAGTCTGGGCTGCTGTCATCGCGTCAGA TTCCCAAGCTGCTGCGCTTGGCAGGGGACGTGAAAACAGGCCTGGTCCCA GACGGGTTGTGGGAGGGGTCAACCATTAATACGCCTTCTATGCTGTGTCT CGAAGATTACCTCGATGCGTTAAGCTGGGTACAGAGGGAGGGAGGCCTGG ACGGTATGATTGCTCGGAGTCGGGCAAATTTAGCAGCGGTGGAGGAGTTT GTGGAGGGCAGGCCGTGGTTATCGTTTTTGGCGAAGGACAAGCGGACGCG ATCCTCGACGAGTATTTGTTTGGAGGTGGGGGGATGGGGGGGTCACGTAG TAGGAGAGGGAGGGAGGGAAGGAGGGAATGGTTACAGTAAGAAGAAGGTC GCGGAACAGTTGAAGACGATGGTTAGGTTGTTGGAGGAGGAGGACTTGGC GTATGATATTGCTTCGTATCGAGACGCCCCTTCGGGGTTAAGGGTTTGGG GAGGCCCGACTGTGGAGAGGGAGGATGTCGAAAGGTTGATGCCTTGGATT GCGTGGGCATATGAGCACGTCAAAGCAACCACTACATAG back to topprotein sequence of NO01G04500.1 >NO01G04500.1-protein ID=NO01G04500.1-protein|Name=NO01G04500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=463bp MPAQLLPPQQPTSRLRRRPRPGWQQQPTTIATLLLALIYSAHAYIPLPRR PMTPKPSSPHFSSGPTKKRPGYSLGNIPINTLGRSHRSPECLARIRLALD LTRDILGIPVDYRLALLPGGGDTGAYEASLWSLVGAEGVPVEALVWDAFS SGWHDDLVNQLRIKKVRENSAPYGELPDLSRVNAKDHDVCFVWNGTTSGV CLPDDGAPWIPSPGPGRGRGLTVCDATSACFCMRLPWDKLDVTTFSWQKA LGGEGAHGMMVLSPRALARLEDNAQSGLLSSRQIPKLLRLAGDVKTGLVP DGLWEGSTINTPSMLCLEDYLDALSWVQREGGLDGMIARSRANLAAVEEF VEGRPWLSFLAKDKRTRSSTSICLEVGGWGGHVVGEGGREGGNGYSKKKV AEQLKTMVRLLEEEDLAYDIASYRDAPSGLRVWGGPTVEREDVERLMPWI AWAYEHVKATTT* back to topmRNA from alignment at chr1:1190349..1191737- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G04500.1 ID=NO01G04500.1|Name=NO01G04500.1|organism=Nannochloropsis oceanica|type=mRNA|length=1389bp|location=Sequence derived from alignment at chr1:1190349..1191737- (Nannochloropsis oceanica) ATGCCTGCCCAACTCTTGCCACCGCAGCAACCCACGTCACGTCTCCGTCG
ACGACCGAGACCCGGGTGGCAGCAGCAGCCCACGACGATCGCGACTTTGC
TCCTGGCCTTGATATATTCCGCGCACGCGTACATCCCTCTCCCACGCCGC
CCTATGACACCCAAGCCCTCTAGCCCGCACTTCAGTTCCGGACCCACCAA
AAAACGCCCCGGCTACTCCCTCGGCAACATACCCATTAACACGCTCGGCC
GCTCACACCGCTCCCCCGAGTGCCTGGCACGTATTCGATTGGCACTTGAT
CTCACCCGCGACATACTTGGCATTCCCGTGGACTATCGCCTGGCCTTGCT
CCCTGGCGGTGGCGACACGGGTGCCTATGAAGCATCGCTGTGGTCATTAG
TGGGGGCAGAAGGCGTGCCTGTTGAAGCCTTGGTATGGGATGCATTTAGC
AGTGGCTGGCACGACGACTTGGTCAACCAACTTCGCATAAAAAAGGTCCG
GGAAAATTCGGCGCCTTACGGTGAGCTCCCGGATTTGTCAAGGGTAAATG
CTAAAGACCATGACGTGTGCTTTGTTTGGAATGGCACCACCAGCGGGGTC
TGCCTCCCCGATGACGGTGCGCCTTGGATTCCTTCACCAGGTCCTGGAAG
AGGAAGAGGGCTCACGGTATGTGATGCGACCTCGGCCTGTTTCTGCATGA
GATTGCCGTGGGACAAGTTAGATGTGACGACTTTCTCCTGGCAAAAAGCC
CTCGGTGGGGAAGGAGCACATGGAATGATGGTCCTGTCACCTCGGGCGTT
GGCAAGGCTGGAAGACAATGCACAGTCTGGGCTGCTGTCATCGCGTCAGA
TTCCCAAGCTGCTGCGCTTGGCAGGGGACGTGAAAACAGGCCTGGTCCCA
GACGGGTTGTGGGAGGGGTCAACCATTAATACGCCTTCTATGCTGTGTCT
CGAAGATTACCTCGATGCGTTAAGCTGGGTACAGAGGGAGGGAGGCCTGG
ACGGTATGATTGCTCGGAGTCGGGCAAATTTAGCAGCGGTGGAGGAGTTT
GTGGAGGGCAGGCCGTGGTTATCGTTTTTGGCGAAGGACAAGCGGACGCG
ATCCTCGACGAGTATTTGTTTGGAGGTGGGGGGATGGGGGGGTCACGTAG
TAGGAGAGGGAGGGAGGGAAGGAGGGAATGGTTACAGTAAGAAGAAGGTC
GCGGAACAGTTGAAGACGATGGTTAGGTTGTTGGAGGAGGAGGACTTGGC
GTATGATATTGCTTCGTATCGAGACGCCCCTTCGGGGTTAAGGGTTTGGG
GAGGCCCGACTGTGGAGAGGGAGGATGTCGAAAGGTTGATGCCTTGGATT
GCGTGGGCATATGAGCACGTCAAAGCAACCACTACATAG back to topCoding sequence (CDS) from alignment at chr1:1190349..1191737- >NO01G04500.1 ID=NO01G04500.1|Name=NO01G04500.1|organism=Nannochloropsis oceanica|type=CDS|length=1389bp|location=Sequence derived from alignment at chr1:1190349..1191737- (Nannochloropsis oceanica) ATGCCTGCCCAACTCTTGCCACCGCAGCAACCCACGTCACGTCTCCGTCG ACGACCGAGACCCGGGTGGCAGCAGCAGCCCACGACGATCGCGACTTTGC TCCTGGCCTTGATATATTCCGCGCACGCGTACATCCCTCTCCCACGCCGC CCTATGACACCCAAGCCCTCTAGCCCGCACTTCAGTTCCGGACCCACCAA AAAACGCCCCGGCTACTCCCTCGGCAACATACCCATTAACACGCTCGGCC GCTCACACCGCTCCCCCGAGTGCCTGGCACGTATTCGATTGGCACTTGAT CTCACCCGCGACATACTTGGCATTCCCGTGGACTATCGCCTGGCCTTGCT CCCTGGCGGTGGCGACACGGGTGCCTATGAAGCATCGCTGTGGTCATTAG TGGGGGCAGAAGGCGTGCCTGTTGAAGCCTTGGTATGGGATGCATTTAGC AGTGGCTGGCACGACGACTTGGTCAACCAACTTCGCATAAAAAAGGTCCG GGAAAATTCGGCGCCTTACGGTGAGCTCCCGGATTTGTCAAGGGTAAATG CTAAAGACCATGACGTGTGCTTTGTTTGGAATGGCACCACCAGCGGGGTC TGCCTCCCCGATGACGGTGCGCCTTGGATTCCTTCACCAGGTCCTGGAAG AGGAAGAGGGCTCACGGTATGTGATGCGACCTCGGCCTGTTTCTGCATGA GATTGCCGTGGGACAAGTTAGATGTGACGACTTTCTCCTGGCAAAAAGCC CTCGGTGGGGAAGGAGCACATGGAATGATGGTCCTGTCACCTCGGGCGTT GGCAAGGCTGGAAGACAATGCACAGTCTGGGCTGCTGTCATCGCGTCAGA TTCCCAAGCTGCTGCGCTTGGCAGGGGACGTGAAAACAGGCCTGGTCCCA GACGGGTTGTGGGAGGGGTCAACCATTAATACGCCTTCTATGCTGTGTCT CGAAGATTACCTCGATGCGTTAAGCTGGGTACAGAGGGAGGGAGGCCTGG ACGGTATGATTGCTCGGAGTCGGGCAAATTTAGCAGCGGTGGAGGAGTTT GTGGAGGGCAGGCCGTGGTTATCGTTTTTGGCGAAGGACAAGCGGACGCG ATCCTCGACGAGTATTTGTTTGGAGGTGGGGGGATGGGGGGGTCACGTAG TAGGAGAGGGAGGGAGGGAAGGAGGGAATGGTTACAGTAAGAAGAAGGTC GCGGAACAGTTGAAGACGATGGTTAGGTTGTTGGAGGAGGAGGACTTGGC GTATGATATTGCTTCGTATCGAGACGCCCCTTCGGGGTTAAGGGTTTGGG GAGGCCCGACTGTGGAGAGGGAGGATGTCGAAAGGTTGATGCCTTGGATT GCGTGGGCATATGAGCACGTCAAAGCAACCACTACATAG back to top
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