NO01G04500.1, NO01G04500.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G04500.1
Unique NameNO01G04500.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1389
Alignment locationchr1:1190349..1191737 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1190349..1191737 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G04500.1 vs.
Match: XP_005855476.1 (phosphoserine aminotransferase [Nannochloropsis gaditana CCMP526]; EKU20878.1 phosphoserine aminotransferase [Nannochloropsis gaditana CCMP526]; EWM29354.1 phosphoserine aminotransferase [Nannochloropsis gaditana])

HSP 1 Score: 632.9 bits (1631), Expect = 7.900e-178
Identity = 301/439 (68.56%), Postives = 355/439 (80.87%), Query Frame = 0 
Query:   23 WQQQPTTIATLLLALIYSAHAYIPLPRRPMTPKPSSPHFSSGPTKKRPGYSLGNIPINTLGRSHRSPECLARIRLALDLTRDILGIPVDYRLALLPGGGDTGAYEASLWSLVGAEGVPVEALVWDAFSSGWHDDLVNQLRIKKVRENSAPYGELPDLSRVNAKDHDVCFVWNGTTSGVCLPDDGAPWIPSPGPGRGRGLTVCDATSACFCMRLPWDKLDVTTFSWQKALGGEGAHGMMVLSPRALARLEDNAQSGLLSSRQIPKLLRLAGDVKTGLVPDGLWEGSTINTPSMLCLEDYLDALSWVQREGGLDGMIARSRANLAAVEEFVEGRPWLSFLAKDKRTRSSTSICLEVGGWGGHVVGEGGREGGNGYSKKKVAEQLKTMVRLLEEEDLAYDIASYRDAPSGLRVWGGPTVEREDVERLMPWIAWAYEHVKATT 462
            W +     A LL+A +Y A AY+P+   P  PKPSSPHFSSGPTKKRPGY L  +PI+TLGRSHRS ECL RI+ AL+LTRDILGIP ++RLALLPGGGDTGA+EA+LWSLVG +GVPV+ALVW+AF  GW+DDL  QL++++V   SAPYGELPDLS+V+A ++DVCFV+NGTTSGVCLPDDGAPWIP  G G+GRGLT+CDATSACFCM LPW+KLDVTTFSWQKALGGEGAHG++VLSPRALARLE+N +SGLL++R IPKLLRLA D  TG VP+GLW GSTINTPSMLC+EDYLDAL W Q +GGL  +IAR+RANL AVE FV  +PWLSFLA + R RSSTSICL + G      G   R GG+     +V  +LK M  L+E E +AYDIASYR+AP GLR+WGGPTVE ED+ RL+PWI WAY+ VK T+
Sbjct:   12 WIKNWFITAALLIAFLYCAEAYVPVGP-PAMPKPSSPHFSSGPTKKRPGYDLAKLPIDTLGRSHRSSECLGRIQRALELTRDILGIPGEFRLALLPGGGDTGAFEAALWSLVGTKGVPVQALVWEAFGQGWYDDLTTQLKVEEVELVSAPYGELPDLSQVSAGENDVCFVYNGTTSGVCLPDDGAPWIPPSGAGKGRGLTLCDATSACFCMPLPWEKLDVTTFSWQKALGGEGAHGILVLSPRALARLEENGRSGLLAARGIPKLLRLAPDPSTGTVPEGLWTGSTINTPSMLCVEDYLDALQWAQEKGGLPALIARTRANLEAVEAFVAKKPWLSFLASNPRIRSSTSICLRIEGL--EEAGSTARGGGS-----QVRHRLKEMAALMEREGVAYDIASYREAPPGLRIWGGPTVETEDIRRLLPWIEWAYDRVKTTS 442
The following BLAST results are available for this feature:
BLAST of NO01G04500.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855476.17.900e-17868.56phosphoserine aminotransferase [Nannochloropsis ga... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G04500NO01G04500Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G04500.1NO01G04500.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G04500.1.cds1NO01G04500.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G04500.1 ID=NO01G04500.1|Name=NO01G04500.1|organism=Nannochloropsis oceanica|type=mRNA|length=1389bp
ATGCCTGCCCAACTCTTGCCACCGCAGCAACCCACGTCACGTCTCCGTCG
ACGACCGAGACCCGGGTGGCAGCAGCAGCCCACGACGATCGCGACTTTGC
TCCTGGCCTTGATATATTCCGCGCACGCGTACATCCCTCTCCCACGCCGC
CCTATGACACCCAAGCCCTCTAGCCCGCACTTCAGTTCCGGACCCACCAA
AAAACGCCCCGGCTACTCCCTCGGCAACATACCCATTAACACGCTCGGCC
GCTCACACCGCTCCCCCGAGTGCCTGGCACGTATTCGATTGGCACTTGAT
CTCACCCGCGACATACTTGGCATTCCCGTGGACTATCGCCTGGCCTTGCT
CCCTGGCGGTGGCGACACGGGTGCCTATGAAGCATCGCTGTGGTCATTAG
TGGGGGCAGAAGGCGTGCCTGTTGAAGCCTTGGTATGGGATGCATTTAGC
AGTGGCTGGCACGACGACTTGGTCAACCAACTTCGCATAAAAAAGGTCCG
GGAAAATTCGGCGCCTTACGGTGAGCTCCCGGATTTGTCAAGGGTAAATG
CTAAAGACCATGACGTGTGCTTTGTTTGGAATGGCACCACCAGCGGGGTC
TGCCTCCCCGATGACGGTGCGCCTTGGATTCCTTCACCAGGTCCTGGAAG
AGGAAGAGGGCTCACGGTATGTGATGCGACCTCGGCCTGTTTCTGCATGA
GATTGCCGTGGGACAAGTTAGATGTGACGACTTTCTCCTGGCAAAAAGCC
CTCGGTGGGGAAGGAGCACATGGAATGATGGTCCTGTCACCTCGGGCGTT
GGCAAGGCTGGAAGACAATGCACAGTCTGGGCTGCTGTCATCGCGTCAGA
TTCCCAAGCTGCTGCGCTTGGCAGGGGACGTGAAAACAGGCCTGGTCCCA
GACGGGTTGTGGGAGGGGTCAACCATTAATACGCCTTCTATGCTGTGTCT
CGAAGATTACCTCGATGCGTTAAGCTGGGTACAGAGGGAGGGAGGCCTGG
ACGGTATGATTGCTCGGAGTCGGGCAAATTTAGCAGCGGTGGAGGAGTTT
GTGGAGGGCAGGCCGTGGTTATCGTTTTTGGCGAAGGACAAGCGGACGCG
ATCCTCGACGAGTATTTGTTTGGAGGTGGGGGGATGGGGGGGTCACGTAG
TAGGAGAGGGAGGGAGGGAAGGAGGGAATGGTTACAGTAAGAAGAAGGTC
GCGGAACAGTTGAAGACGATGGTTAGGTTGTTGGAGGAGGAGGACTTGGC
GTATGATATTGCTTCGTATCGAGACGCCCCTTCGGGGTTAAGGGTTTGGG
GAGGCCCGACTGTGGAGAGGGAGGATGTCGAAAGGTTGATGCCTTGGATT
GCGTGGGCATATGAGCACGTCAAAGCAACCACTACATAG
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protein sequence of NO01G04500.1

>NO01G04500.1-protein ID=NO01G04500.1-protein|Name=NO01G04500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=463bp
MPAQLLPPQQPTSRLRRRPRPGWQQQPTTIATLLLALIYSAHAYIPLPRR
PMTPKPSSPHFSSGPTKKRPGYSLGNIPINTLGRSHRSPECLARIRLALD
LTRDILGIPVDYRLALLPGGGDTGAYEASLWSLVGAEGVPVEALVWDAFS
SGWHDDLVNQLRIKKVRENSAPYGELPDLSRVNAKDHDVCFVWNGTTSGV
CLPDDGAPWIPSPGPGRGRGLTVCDATSACFCMRLPWDKLDVTTFSWQKA
LGGEGAHGMMVLSPRALARLEDNAQSGLLSSRQIPKLLRLAGDVKTGLVP
DGLWEGSTINTPSMLCLEDYLDALSWVQREGGLDGMIARSRANLAAVEEF
VEGRPWLSFLAKDKRTRSSTSICLEVGGWGGHVVGEGGREGGNGYSKKKV
AEQLKTMVRLLEEEDLAYDIASYRDAPSGLRVWGGPTVEREDVERLMPWI
AWAYEHVKATTT*
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mRNA from alignment at chr1:1190349..1191737-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G04500.1 ID=NO01G04500.1|Name=NO01G04500.1|organism=Nannochloropsis oceanica|type=mRNA|length=1389bp|location=Sequence derived from alignment at chr1:1190349..1191737- (Nannochloropsis oceanica)
ATGCCTGCCCAACTCTTGCCACCGCAGCAACCCACGTCACGTCTCCGTCG
ACGACCGAGACCCGGGTGGCAGCAGCAGCCCACGACGATCGCGACTTTGC
TCCTGGCCTTGATATATTCCGCGCACGCGTACATCCCTCTCCCACGCCGC
CCTATGACACCCAAGCCCTCTAGCCCGCACTTCAGTTCCGGACCCACCAA
AAAACGCCCCGGCTACTCCCTCGGCAACATACCCATTAACACGCTCGGCC
GCTCACACCGCTCCCCCGAGTGCCTGGCACGTATTCGATTGGCACTTGAT
CTCACCCGCGACATACTTGGCATTCCCGTGGACTATCGCCTGGCCTTGCT
CCCTGGCGGTGGCGACACGGGTGCCTATGAAGCATCGCTGTGGTCATTAG
TGGGGGCAGAAGGCGTGCCTGTTGAAGCCTTGGTATGGGATGCATTTAGC
AGTGGCTGGCACGACGACTTGGTCAACCAACTTCGCATAAAAAAGGTCCG
GGAAAATTCGGCGCCTTACGGTGAGCTCCCGGATTTGTCAAGGGTAAATG
CTAAAGACCATGACGTGTGCTTTGTTTGGAATGGCACCACCAGCGGGGTC
TGCCTCCCCGATGACGGTGCGCCTTGGATTCCTTCACCAGGTCCTGGAAG
AGGAAGAGGGCTCACGGTATGTGATGCGACCTCGGCCTGTTTCTGCATGA
GATTGCCGTGGGACAAGTTAGATGTGACGACTTTCTCCTGGCAAAAAGCC
CTCGGTGGGGAAGGAGCACATGGAATGATGGTCCTGTCACCTCGGGCGTT
GGCAAGGCTGGAAGACAATGCACAGTCTGGGCTGCTGTCATCGCGTCAGA
TTCCCAAGCTGCTGCGCTTGGCAGGGGACGTGAAAACAGGCCTGGTCCCA
GACGGGTTGTGGGAGGGGTCAACCATTAATACGCCTTCTATGCTGTGTCT
CGAAGATTACCTCGATGCGTTAAGCTGGGTACAGAGGGAGGGAGGCCTGG
ACGGTATGATTGCTCGGAGTCGGGCAAATTTAGCAGCGGTGGAGGAGTTT
GTGGAGGGCAGGCCGTGGTTATCGTTTTTGGCGAAGGACAAGCGGACGCG
ATCCTCGACGAGTATTTGTTTGGAGGTGGGGGGATGGGGGGGTCACGTAG
TAGGAGAGGGAGGGAGGGAAGGAGGGAATGGTTACAGTAAGAAGAAGGTC
GCGGAACAGTTGAAGACGATGGTTAGGTTGTTGGAGGAGGAGGACTTGGC
GTATGATATTGCTTCGTATCGAGACGCCCCTTCGGGGTTAAGGGTTTGGG
GAGGCCCGACTGTGGAGAGGGAGGATGTCGAAAGGTTGATGCCTTGGATT
GCGTGGGCATATGAGCACGTCAAAGCAACCACTACATAG
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Coding sequence (CDS) from alignment at chr1:1190349..1191737-

>NO01G04500.1 ID=NO01G04500.1|Name=NO01G04500.1|organism=Nannochloropsis oceanica|type=CDS|length=1389bp|location=Sequence derived from alignment at chr1:1190349..1191737- (Nannochloropsis oceanica)
ATGCCTGCCCAACTCTTGCCACCGCAGCAACCCACGTCACGTCTCCGTCG
ACGACCGAGACCCGGGTGGCAGCAGCAGCCCACGACGATCGCGACTTTGC
TCCTGGCCTTGATATATTCCGCGCACGCGTACATCCCTCTCCCACGCCGC
CCTATGACACCCAAGCCCTCTAGCCCGCACTTCAGTTCCGGACCCACCAA
AAAACGCCCCGGCTACTCCCTCGGCAACATACCCATTAACACGCTCGGCC
GCTCACACCGCTCCCCCGAGTGCCTGGCACGTATTCGATTGGCACTTGAT
CTCACCCGCGACATACTTGGCATTCCCGTGGACTATCGCCTGGCCTTGCT
CCCTGGCGGTGGCGACACGGGTGCCTATGAAGCATCGCTGTGGTCATTAG
TGGGGGCAGAAGGCGTGCCTGTTGAAGCCTTGGTATGGGATGCATTTAGC
AGTGGCTGGCACGACGACTTGGTCAACCAACTTCGCATAAAAAAGGTCCG
GGAAAATTCGGCGCCTTACGGTGAGCTCCCGGATTTGTCAAGGGTAAATG
CTAAAGACCATGACGTGTGCTTTGTTTGGAATGGCACCACCAGCGGGGTC
TGCCTCCCCGATGACGGTGCGCCTTGGATTCCTTCACCAGGTCCTGGAAG
AGGAAGAGGGCTCACGGTATGTGATGCGACCTCGGCCTGTTTCTGCATGA
GATTGCCGTGGGACAAGTTAGATGTGACGACTTTCTCCTGGCAAAAAGCC
CTCGGTGGGGAAGGAGCACATGGAATGATGGTCCTGTCACCTCGGGCGTT
GGCAAGGCTGGAAGACAATGCACAGTCTGGGCTGCTGTCATCGCGTCAGA
TTCCCAAGCTGCTGCGCTTGGCAGGGGACGTGAAAACAGGCCTGGTCCCA
GACGGGTTGTGGGAGGGGTCAACCATTAATACGCCTTCTATGCTGTGTCT
CGAAGATTACCTCGATGCGTTAAGCTGGGTACAGAGGGAGGGAGGCCTGG
ACGGTATGATTGCTCGGAGTCGGGCAAATTTAGCAGCGGTGGAGGAGTTT
GTGGAGGGCAGGCCGTGGTTATCGTTTTTGGCGAAGGACAAGCGGACGCG
ATCCTCGACGAGTATTTGTTTGGAGGTGGGGGGATGGGGGGGTCACGTAG
TAGGAGAGGGAGGGAGGGAAGGAGGGAATGGTTACAGTAAGAAGAAGGTC
GCGGAACAGTTGAAGACGATGGTTAGGTTGTTGGAGGAGGAGGACTTGGC
GTATGATATTGCTTCGTATCGAGACGCCCCTTCGGGGTTAAGGGTTTGGG
GAGGCCCGACTGTGGAGAGGGAGGATGTCGAAAGGTTGATGCCTTGGATT
GCGTGGGCATATGAGCACGTCAAAGCAACCACTACATAG
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Synonyms
Publications