NO01G04490.1, NO01G04490.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G04490.1
Unique NameNO01G04490.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1320
Alignment locationchr1:1188040..1189359 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1188040..1189359 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G04490.1 vs.
Match: EWM29375.1 (peroxisomal membrane 22 kda (mpv17 pmp22) family protein [Nannochloropsis gaditana])

HSP 1 Score: 488.0 bits (1255), Expect = 3.000e-134
Identity = 279/451 (61.86%), Postives = 314/451 (69.62%), Query Frame = 0 
Query:    1 MRRQDALMAALAGLTLCLGAVRGFVMPRLPRQQCQTFGRSTGSSTSFISHHPSPTFGQTPRNVLSSRLWIKTPSVAEDNSVADKKKQSTEPSSSFAPITSLET-SLNSSDDSSASPQDLARRFAAANGIDSRQFNFLVNVGMISLVAAVVLAKVVTVDLDSWRGWTPVEIFTRIPLDNWDGYMDVLTLHPIMVKAITSGSVYTLGDTVAQLYEGKTLGEIDRGRVARSAAAGFIGHGPLSHLWYGVSEGFFDWLGWEGWWTTFPKITVDQLVWSPIWNGCYIFLLGAMKREALGEIVGTVKSTSFSLITSGLKLWPLAHVVTYGFIPVENRLLWVDLVEILWVTILSREAANADAEKA-----VAAAEAAGISLG---GDGGHAPGVLLSKDEPTKVGEESVTAELSDNVSMPVVANFSE------AVAAAASKQARREQMVTVPVHVEDE 437
            MR +   +  LA   LCLGAVR FV+P  P     +   S G ST      P P+     R    SR W+KT   A+D  +A+ K+       SFAP+TSLET S + + D+  S Q+  R FAA  G+DSRQ NFL+NVG+IS VAA+VLAKVVTVDLD WRGWTP EIFTRIPLDNWDGYM+VL+LHP+ VKA+TSGSVYTLGD VAQLYEGKTLGEIDRGRVARS  AGF+GHGPLSH WYGVSE FF WLGWEGWWTTFPKITVDQLVWSPIWNGCYIFLLGAMKREALGEIV TVKSTSFSLITSGLKLWPLAHVVTYG IPVENRLLWVDLVEILWVTILSREAANADAEKA     VA  EA+  +L     +   AP    + D+   V            + MP+ +N S+       +   A     +EQ   V VH EDE
Sbjct:    1 MRGRGLDVGVLAVFCLCLGAVRAFVVPVTPGLHHLSRSSSIGPSTCL----PLPSCVPPARTSCVSRRWVKTQ--AKDEEIANAKEHR-----SFAPVTSLETLSEHDAADTPRSLQERVRLFAATKGVDSRQLNFLLNVGLISAVAALVLAKVVTVDLDVWRGWTPAEIFTRIPLDNWDGYMNVLSLHPVFVKAVTSGSVYTLGDGVAQLYEGKTLGEIDRGRVARSGIAGFVGHGPLSHWWYGVSEDFFGWLGWEGWWTTFPKITVDQLVWSPIWNGCYIFLLGAMKREALGEIVNTVKSTSFSLITSGLKLWPLAHVVTYGVIPVENRLLWVDLVEILWVTILSREAANADAEKAEAIGDVAVEEASSKTLAVVDSETMQAPSARAAGDDMEPV------------IFMPLASNVSDLETEDGQLRDHAEHHPEQEQQRAVSVHREDE 428
The following BLAST results are available for this feature:
BLAST of NO01G04490.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29375.13.000e-13461.86peroxisomal membrane 22 kda (mpv17 pmp22) family p... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G04490NO01G04490Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G04490.1NO01G04490.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G04490.1.cds1NO01G04490.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G04490.1 ID=NO01G04490.1|Name=NO01G04490.1|organism=Nannochloropsis oceanica|type=mRNA|length=1320bp
ATGAGGCGACAAGACGCCTTGATGGCCGCGCTGGCGGGACTGACGCTCTG
CTTGGGTGCCGTGCGTGGGTTTGTCATGCCTCGTCTGCCCCGGCAGCAGT
GTCAGACCTTCGGCCGCAGCACTGGCAGCAGCACCAGCTTTATCAGTCAC
CACCCCAGCCCCACCTTCGGTCAAACTCCACGCAATGTGCTTTCTTCCCG
CCTGTGGATCAAGACCCCATCCGTGGCGGAGGATAACAGCGTGGCTGACA
AGAAGAAGCAGTCCACAGAGCCTTCGTCCTCCTTCGCCCCCATCACCTCC
CTCGAAACATCCCTCAATTCTTCCGACGACTCCAGCGCCTCCCCACAAGA
TCTCGCCCGTAGATTCGCTGCTGCCAACGGTATCGATTCCCGTCAGTTTA
ATTTCCTCGTGAACGTCGGGATGATCTCTCTGGTGGCCGCCGTGGTGCTT
GCCAAAGTAGTGACGGTCGATTTGGACTCGTGGCGTGGCTGGACACCTGT
TGAGATTTTCACTCGGATTCCCTTGGATAATTGGGACGGATACATGGACG
TGTTGACGTTGCATCCTATTATGGTGAAGGCTATCACGAGTGGGAGTGTA
TATACTTTGGGGGATACGGTGGCACAGCTGTATGAGGGCAAGACGCTCGG
AGAGATTGACCGAGGCCGGGTGGCGCGGTCGGCAGCTGCAGGGTTTATCG
GACATGGCCCATTGTCGCATTTATGGTATGGGGTGTCGGAGGGTTTTTTC
GATTGGTTGGGCTGGGAGGGGTGGTGGACGACTTTTCCCAAGATCACGGT
GGATCAACTAGTGTGGTCACCGATTTGGAATGGATGTTATATTTTCTTGC
TGGGAGCCATGAAAAGGGAGGCACTAGGCGAGATTGTCGGGACGGTAAAG
TCGACGAGTTTCAGCTTGATCACCTCAGGGTTGAAGCTATGGCCGTTGGC
ACATGTGGTGACGTACGGATTTATCCCTGTAGAGAATCGCTTGCTGTGGG
TGGACTTGGTTGAGATTCTGTGGGTCACCATCCTGTCCAGGGAGGCCGCG
AACGCTGATGCAGAGAAAGCGGTAGCAGCAGCGGAAGCTGCAGGGATTTC
GTTGGGTGGAGATGGGGGTCATGCACCTGGAGTTTTGCTATCTAAAGATG
AGCCGACCAAGGTAGGGGAGGAATCGGTGACTGCTGAATTGTCGGACAAC
GTATCCATGCCTGTCGTCGCGAATTTCTCGGAGGCTGTGGCAGCGGCAGC
GTCGAAACAAGCGCGTAGAGAACAAATGGTCACGGTACCGGTGCACGTGG
AAGATGAATTGACTTCGTGA
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protein sequence of NO01G04490.1

>NO01G04490.1-protein ID=NO01G04490.1-protein|Name=NO01G04490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=440bp
MRRQDALMAALAGLTLCLGAVRGFVMPRLPRQQCQTFGRSTGSSTSFISH
HPSPTFGQTPRNVLSSRLWIKTPSVAEDNSVADKKKQSTEPSSSFAPITS
LETSLNSSDDSSASPQDLARRFAAANGIDSRQFNFLVNVGMISLVAAVVL
AKVVTVDLDSWRGWTPVEIFTRIPLDNWDGYMDVLTLHPIMVKAITSGSV
YTLGDTVAQLYEGKTLGEIDRGRVARSAAAGFIGHGPLSHLWYGVSEGFF
DWLGWEGWWTTFPKITVDQLVWSPIWNGCYIFLLGAMKREALGEIVGTVK
STSFSLITSGLKLWPLAHVVTYGFIPVENRLLWVDLVEILWVTILSREAA
NADAEKAVAAAEAAGISLGGDGGHAPGVLLSKDEPTKVGEESVTAELSDN
VSMPVVANFSEAVAAAASKQARREQMVTVPVHVEDELTS*
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mRNA from alignment at chr1:1188040..1189359+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G04490.1 ID=NO01G04490.1|Name=NO01G04490.1|organism=Nannochloropsis oceanica|type=mRNA|length=1320bp|location=Sequence derived from alignment at chr1:1188040..1189359+ (Nannochloropsis oceanica)
ATGAGGCGACAAGACGCCTTGATGGCCGCGCTGGCGGGACTGACGCTCTG
CTTGGGTGCCGTGCGTGGGTTTGTCATGCCTCGTCTGCCCCGGCAGCAGT
GTCAGACCTTCGGCCGCAGCACTGGCAGCAGCACCAGCTTTATCAGTCAC
CACCCCAGCCCCACCTTCGGTCAAACTCCACGCAATGTGCTTTCTTCCCG
CCTGTGGATCAAGACCCCATCCGTGGCGGAGGATAACAGCGTGGCTGACA
AGAAGAAGCAGTCCACAGAGCCTTCGTCCTCCTTCGCCCCCATCACCTCC
CTCGAAACATCCCTCAATTCTTCCGACGACTCCAGCGCCTCCCCACAAGA
TCTCGCCCGTAGATTCGCTGCTGCCAACGGTATCGATTCCCGTCAGTTTA
ATTTCCTCGTGAACGTCGGGATGATCTCTCTGGTGGCCGCCGTGGTGCTT
GCCAAAGTAGTGACGGTCGATTTGGACTCGTGGCGTGGCTGGACACCTGT
TGAGATTTTCACTCGGATTCCCTTGGATAATTGGGACGGATACATGGACG
TGTTGACGTTGCATCCTATTATGGTGAAGGCTATCACGAGTGGGAGTGTA
TATACTTTGGGGGATACGGTGGCACAGCTGTATGAGGGCAAGACGCTCGG
AGAGATTGACCGAGGCCGGGTGGCGCGGTCGGCAGCTGCAGGGTTTATCG
GACATGGCCCATTGTCGCATTTATGGTATGGGGTGTCGGAGGGTTTTTTC
GATTGGTTGGGCTGGGAGGGGTGGTGGACGACTTTTCCCAAGATCACGGT
GGATCAACTAGTGTGGTCACCGATTTGGAATGGATGTTATATTTTCTTGC
TGGGAGCCATGAAAAGGGAGGCACTAGGCGAGATTGTCGGGACGGTAAAG
TCGACGAGTTTCAGCTTGATCACCTCAGGGTTGAAGCTATGGCCGTTGGC
ACATGTGGTGACGTACGGATTTATCCCTGTAGAGAATCGCTTGCTGTGGG
TGGACTTGGTTGAGATTCTGTGGGTCACCATCCTGTCCAGGGAGGCCGCG
AACGCTGATGCAGAGAAAGCGGTAGCAGCAGCGGAAGCTGCAGGGATTTC
GTTGGGTGGAGATGGGGGTCATGCACCTGGAGTTTTGCTATCTAAAGATG
AGCCGACCAAGGTAGGGGAGGAATCGGTGACTGCTGAATTGTCGGACAAC
GTATCCATGCCTGTCGTCGCGAATTTCTCGGAGGCTGTGGCAGCGGCAGC
GTCGAAACAAGCGCGTAGAGAACAAATGGTCACGGTACCGGTGCACGTGG
AAGATGAATTGACTTCGTGA
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Coding sequence (CDS) from alignment at chr1:1188040..1189359+

>NO01G04490.1 ID=NO01G04490.1|Name=NO01G04490.1|organism=Nannochloropsis oceanica|type=CDS|length=1320bp|location=Sequence derived from alignment at chr1:1188040..1189359+ (Nannochloropsis oceanica)
ATGAGGCGACAAGACGCCTTGATGGCCGCGCTGGCGGGACTGACGCTCTG
CTTGGGTGCCGTGCGTGGGTTTGTCATGCCTCGTCTGCCCCGGCAGCAGT
GTCAGACCTTCGGCCGCAGCACTGGCAGCAGCACCAGCTTTATCAGTCAC
CACCCCAGCCCCACCTTCGGTCAAACTCCACGCAATGTGCTTTCTTCCCG
CCTGTGGATCAAGACCCCATCCGTGGCGGAGGATAACAGCGTGGCTGACA
AGAAGAAGCAGTCCACAGAGCCTTCGTCCTCCTTCGCCCCCATCACCTCC
CTCGAAACATCCCTCAATTCTTCCGACGACTCCAGCGCCTCCCCACAAGA
TCTCGCCCGTAGATTCGCTGCTGCCAACGGTATCGATTCCCGTCAGTTTA
ATTTCCTCGTGAACGTCGGGATGATCTCTCTGGTGGCCGCCGTGGTGCTT
GCCAAAGTAGTGACGGTCGATTTGGACTCGTGGCGTGGCTGGACACCTGT
TGAGATTTTCACTCGGATTCCCTTGGATAATTGGGACGGATACATGGACG
TGTTGACGTTGCATCCTATTATGGTGAAGGCTATCACGAGTGGGAGTGTA
TATACTTTGGGGGATACGGTGGCACAGCTGTATGAGGGCAAGACGCTCGG
AGAGATTGACCGAGGCCGGGTGGCGCGGTCGGCAGCTGCAGGGTTTATCG
GACATGGCCCATTGTCGCATTTATGGTATGGGGTGTCGGAGGGTTTTTTC
GATTGGTTGGGCTGGGAGGGGTGGTGGACGACTTTTCCCAAGATCACGGT
GGATCAACTAGTGTGGTCACCGATTTGGAATGGATGTTATATTTTCTTGC
TGGGAGCCATGAAAAGGGAGGCACTAGGCGAGATTGTCGGGACGGTAAAG
TCGACGAGTTTCAGCTTGATCACCTCAGGGTTGAAGCTATGGCCGTTGGC
ACATGTGGTGACGTACGGATTTATCCCTGTAGAGAATCGCTTGCTGTGGG
TGGACTTGGTTGAGATTCTGTGGGTCACCATCCTGTCCAGGGAGGCCGCG
AACGCTGATGCAGAGAAAGCGGTAGCAGCAGCGGAAGCTGCAGGGATTTC
GTTGGGTGGAGATGGGGGTCATGCACCTGGAGTTTTGCTATCTAAAGATG
AGCCGACCAAGGTAGGGGAGGAATCGGTGACTGCTGAATTGTCGGACAAC
GTATCCATGCCTGTCGTCGCGAATTTCTCGGAGGCTGTGGCAGCGGCAGC
GTCGAAACAAGCGCGTAGAGAACAAATGGTCACGGTACCGGTGCACGTGG
AAGATGAATTGACTTCGTGA
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Synonyms
Publications