NO01G04480.1, NO01G04480.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO01G04480.1
Unique Name	NO01G04480.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1988
Alignment location	chr1:1185334..1187525 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr1	genome	chr1:1185334..1187525 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO01G04480.1 vs.
Match: EWM29347.1 (nadh:ubiquinone oxidoreductase complex i intermediate-associated protein 30 [Nannochloropsis gaditana])

HSP 1 Score: 890.6 bits (2300), Expect = 2.700e-255
Identity = 452/588 (76.87%), Postives = 501/588 (85.20%), Query Frame = 0

Query:    7 ICLLAFAACFLVISHAFVGITPIPMHSTSLCRSRHPVRIIVSMADGEGGETKPKGKGWPVGRALRTFLSFNGPRFFTGRSNKKGAASASAAIALATPVQLGANLPLGHGVVLVTGATGGVGRRVVSLLLEKGLRVRALARNEQKALAMLSAGKRPDPASSRLEVVTADIRDAASLTPEIMEGVVAVVGCTAAIVQPKTGDSEDRAKYYQGIVFYEPETLDSPEETDYKGVQNVLAAARKYGDVGGTKKLYSCSPAFIDRWQDFASLDDVVMGGRSDSKFSLVPGAGEEGNDDSPSRIAGVFEGVVTTDRGFASGGFTSMRTRNLEPALDLTGYEGIRLRVKGDGNTYKIILRDSDQWDGPSWSTMVPTKDGIWEDLEVPFASLIPVARTRSIPPEQRQPFKLDSVFALQIMLSKFAYDGEENPTYKNGPFKLVIQSIEAYQGNQAPRTPRYVHISSAGVERPGRPGIVLEEEPPAVRMNDMLGGILTYKLKGEDEIRGSGLPYTIIRPCALTEEAPNMPLLVDVGDTIKGKVSRDDVARLAVAALACPDASDLTFEVKSTIPFSQAWTEEDAAKVPSTDMTKVFAEVK 595
            +CLL  A   L+   AF+   P P H+        P +   SM   E   +K   KGWPVGRALRTFLSFNGPRF +GR  KK +     A A     QLGA+LP+GHG+VLVTGATGGVGRRVVSLLLEKG+RVRALARNEQKALAML+ G++P+P +  LE+V ADIRD A+LTPE+MEGV AV+GCTAAIVQPK+GDSEDRAKYYQGIVFYEPETLDSPEETD+ GV+NVLAAA KY DV G KKLY+C+PAFIDRWQDFASLDDVVMGG SDSKF+LVPGAGE GN+DSPSRIAGVFEG+VTT+RGFASGGFTS+RTRNLEP LDLTGYEG+RLRV GDGNTYKIILRDSDQWDGPSWSTMVPT+ G W DL+VPF SLIPVARTRSIP +QRQ F+LD +FA+QIMLSKFAYDGE NPTYK+GPFKLVIQSIEAY G  APRTPR+VHISSAGVERPGRPG+VLEEEPPAVRMNDMLGGILTYKLKGE+ IR SGLPYTIIRPCALTEE  NMPL VDVGDTIKGKVSRDDVARLAV ALACP+A+DLTFEVKS++ FSQ WT EDAA+ P TDMT+VFA+VK
Sbjct:   12 VCLLTLATSHLLPCTAFMRPFPQPSHAARGLGGGRPRQ--GSMVMQESSSSK---KGWPVGRALRTFLSFNGPRFLSGRRKKKTSGGVGLATATTVTPQLGADLPVGHGIVLVTGATGGVGRRVVSLLLEKGIRVRALARNEQKALAMLNGGQKPEPGAL-LEIVNADIRDPAALTPELMEGVTAVIGCTAAIVQPKSGDSEDRAKYYQGIVFYEPETLDSPEETDFVGVKNVLAAASKYADVKGCKKLYNCAPAFIDRWQDFASLDDVVMGGTSDSKFTLVPGAGEAGNEDSPSRIAGVFEGMVTTERGFASGGFTSVRTRNLEPPLDLTGYEGLRLRVLGDGNTYKIILRDSDQWDGPSWSTMVPTQAGEWADLDVPFTSLIPVARTRSIPADQRQAFRLDQIFAIQIMLSKFAYDGEVNPTYKDGPFKLVIQSIEAYMGPSAPRTPRFVHISSAGVERPGRPGVVLEEEPPAVRMNDMLGGILTYKLKGEEAIRASGLPYTIIRPCALTEEPANMPLEVDVGDTIKGKVSRDDVARLAVYALACPEATDLTFEVKSSLAFSQQWTAEDAARAPVTDMTQVFAQVK 593

The following BLAST results are available for this feature:

BLAST of NO01G04480.1 vs.

BLAST of NO01G04480.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM29347.1	2.700e-255	76.87	nadh:ubiquinone oxidoreductase complex i intermedi...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO01G04480	NO01G04480	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO01G04480.1	NO01G04480.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO01G04480.1.cds1	NO01G04480.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G04480.1.cds2	NO01G04480.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr1:1185334..1187525-
coding sequence from alignment at chr1:1185334..1187525-

mRNA sequence

>NO01G04480.1 ID=NO01G04480.1|Name=NO01G04480.1|organism=Nannochloropsis oceanica|type=mRNA|length=1988bp
ACAGACCATGAGGTTGTCGTCGCCCATCTGTCTTCTGGCTTTTGCGGCCT
GCTTTCTAGTCATCTCACATGCTTTTGTTGGGATCACACCGATCCCTATG
CATTCCACCAGCCTCTGTCGAAGCCGACACCCCGTGCGCATCATCGTCAG
CATGGCTGACGGCGAGGGAGGGGAAACCAAGCCCAAAGGCAAGGGATGGC
CCGTGGGCAGAGCCCTCCGCACCTTTCTCTCCTTCAATGGCCCTCGTTTT
TTCACCGGCCGTAGCAACAAAAAGGGAGCCGCTTCCGCGAGCGCTGCTAT
TGCCTTGGCCACTCCTGTCCAGCTCGGTGCCAATCTTCCTTTGGGACACG
GTGTGGTCCTAGTTACAGGTGCTACAGGTGGGGTGGGCCGTCGTGTGGTC
AGTCTGCTTTTGGAGAAAGGCCTGCGTGTCCGTGCATTGGCACGAAACGA
GCAAAAAGCTCTAGCCATGCTGAGTGCGGGAAAGAGGCCTGACCCGGCCT
CCAGTCGGTTGGAAGTCGTCACTGCTGATATTCGCGATGCGGCTAGCTTG
ACACCTGAGATTATGGAGGGGGTGGTTGCAGTGGTGGGATGTACAGCTGC
GATTGTCCAACCGAAGACCGGGGACTCGGAAGACCGAGCGAAATATTACC
AGGGTATTGTGTTTTACGAACCGGAGACGTTAGATAGCCCTGAGGAGACT
GATTACAAGGGGGTACAGAATGTCTTGGCGGCGGCGAGAAAATATGGGGA
TGTGGGAGGTACGAAGAAATTGTATTCCTGCAGCCCGGCTTTCATTGATC
GATGGCAGGATTTTGCGAGTCTGGATGATGTGGTGATGGGAGGGAGGAGT
GACTCTAAGTTTAGCTTGGTGCCGGGGGCGGGGGAGGAGGGGAATGACGA
TAGTCCAAGTAGGATTGCGGGGGTCTTTGAAGGGGTGGTAACAACCGATA
GAGGATTCGCGAGTGGCGGATTTACGTCAATGAGGACCAGGAATTTGGAG
CCGGCGTTAGATTTGACGGGGTACGAGGGGATTAGGTTGAGGGTAAAGGG
GGACGGGAATACGTACAAGATCATCTTGAGGGACTCGGATCAGTGGGACG
GCCCGAGTTGGAGTACCATGGTCCCGACGAAGGACGGGATCTGGGAGGAT
CTGGAGGTGCCCTTCGCGAGCTTGATCCCTGTGGCACGGACGAGGAGCAT
CCCGCCCGAGCAGCGGCAGCCGTTTAAATTGGATAGCGTTTTTGCGTTAC
AGATAATGCTGTCCAAATTTGCGTATGACGGGGAGGAAAACCCGACGTAC
AAAAACGGCCCATTCAAGTTGGTGATTCAGTCCATTGAAGCTTACCAAGG
CAATCAAGCCCCCCGCACTCCGCGATACGTCCACATTTCCTCTGCGGGTG
TTGAACGCCCGGGGCGACCCGGGATTGTCTTGGAGGAGGAGCCGCCTGCT
GTAAGGATGAATGACATGTTGGGCGGGATTCTGACTTATAAGCTGAAGGG
AGAGGATGAGATTAGGGGGAGTGGATTGCCGTACACGATCATTCGGCCAT
GTGCGCTGACGGAGGAAGCGCCTAATATGCCTTTGCTTGTGGATGTAGGG
GATACGATCAAGGGGAAGGTCAGTAGGGACGATGTGGCTAGGCTGGCGGT
GGCGGCCTTGGCATGCCCGGATGCTTCTGATTTGACATTTGAGGTGAAGA
GTACTATTCCCTTTTCGCAGGCCTGGACGGAGGAAGATGCCGCTAAGGTT
CCATCGACGGATATGACCAAGGTATTTGCGGAAGTAAAAGGCAAGGTGGG
AAAGTAGAATGAGGGAAGGAAAGGGAGGATAGATGGGGTGGTTTTGAGGA
AGATGAAGAATTTGTGTAGGAAGCAAGTGATTTCACGTTGTTGACTGGGC
GATCGGTGTGAGAGACAATGAACAATTAAGAATAAATTAACAACAACAAC
AAAAGGAGGTTAAAGAACAGGGATTAAAAGACTTGGTT

protein sequence of NO01G04480.1

>NO01G04480.1-protein ID=NO01G04480.1-protein|Name=NO01G04480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=600bp
MRLSSPICLLAFAACFLVISHAFVGITPIPMHSTSLCRSRHPVRIIVSMA
DGEGGETKPKGKGWPVGRALRTFLSFNGPRFFTGRSNKKGAASASAAIAL
ATPVQLGANLPLGHGVVLVTGATGGVGRRVVSLLLEKGLRVRALARNEQK
ALAMLSAGKRPDPASSRLEVVTADIRDAASLTPEIMEGVVAVVGCTAAIV
QPKTGDSEDRAKYYQGIVFYEPETLDSPEETDYKGVQNVLAAARKYGDVG
GTKKLYSCSPAFIDRWQDFASLDDVVMGGRSDSKFSLVPGAGEEGNDDSP
SRIAGVFEGVVTTDRGFASGGFTSMRTRNLEPALDLTGYEGIRLRVKGDG
NTYKIILRDSDQWDGPSWSTMVPTKDGIWEDLEVPFASLIPVARTRSIPP
EQRQPFKLDSVFALQIMLSKFAYDGEENPTYKNGPFKLVIQSIEAYQGNQ
APRTPRYVHISSAGVERPGRPGIVLEEEPPAVRMNDMLGGILTYKLKGED
EIRGSGLPYTIIRPCALTEEAPNMPLLVDVGDTIKGKVSRDDVARLAVAA
LACPDASDLTFEVKSTIPFSQAWTEEDAAKVPSTDMTKVFAEVKGKVGK*

mRNA from alignment at chr1:1185334..1187525-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO01G04480.1 ID=NO01G04480.1|Name=NO01G04480.1|organism=Nannochloropsis oceanica|type=mRNA|length=2192bp|location=Sequence derived from alignment at chr1:1185334..1187525- (Nannochloropsis oceanica)
ACAGACCATGAGGTTGTCGTCGCCCATCTGTCTTCTGGCTTTTGCGGCCT
GCTTTCTAGTCATCTCACATGCTTTTGTTGGGATCACACCGATCCCTATG
CATTCCACCAGCCTCTGTCGAAGCCGACACCCCGTGCGCATCATCGTCAG
CATGGCTGACGGCGAGGGAGGGGAAACCAAGCCCAAAGGCAAGGGATGGG
TACGTGTAGGGTATGGTGAACAGGATGTGAGAGGGCATGTCTAAGTCTAC
TTGAGCAGTGACATGTCAAGAGTCAGAGGCTGCCTTTCGAGCAGCCCTGA
AGCTTCGCTATTGAAGAGATAGCCAGGGTAGCACCTCCCACCTTCCCAAA
AAACTTAAACATCTTCCTATTCTTCCCCCTATTCCCATCATCAAATTACA
CAGCCCGTGGGCAGAGCCCTCCGCACCTTTCTCTCCTTCAATGGCCCTCG
TTTTTTCACCGGCCGTAGCAACAAAAAGGGAGCCGCTTCCGCGAGCGCTG
CTATTGCCTTGGCCACTCCTGTCCAGCTCGGTGCCAATCTTCCTTTGGGA
CACGGTGTGGTCCTAGTTACAGGTGCTACAGGTGGGGTGGGCCGTCGTGT
GGTCAGTCTGCTTTTGGAGAAAGGCCTGCGTGTCCGTGCATTGGCACGAA
ACGAGCAAAAAGCTCTAGCCATGCTGAGTGCGGGAAAGAGGCCTGACCCG
GCCTCCAGTCGGTTGGAAGTCGTCACTGCTGATATTCGCGATGCGGCTAG
CTTGACACCTGAGATTATGGAGGGGGTGGTTGCAGTGGTGGGATGTACAG
CTGCGATTGTCCAACCGAAGACCGGGGACTCGGAAGACCGAGCGAAATAT
TACCAGGGTATTGTGTTTTACGAACCGGAGACGTTAGATAGCCCTGAGGA
GACTGATTACAAGGGGGTACAGAATGTCTTGGCGGCGGCGAGAAAATATG
GGGATGTGGGAGGTACGAAGAAATTGTATTCCTGCAGCCCGGCTTTCATT
GATCGATGGCAGGATTTTGCGAGTCTGGATGATGTGGTGATGGGAGGGAG
GAGTGACTCTAAGTTTAGCTTGGTGCCGGGGGCGGGGGAGGAGGGGAATG
ACGATAGTCCAAGTAGGATTGCGGGGGTCTTTGAAGGGGTGGTAACAACC
GATAGAGGATTCGCGAGTGGCGGATTTACGTCAATGAGGACCAGGAATTT
GGAGCCGGCGTTAGATTTGACGGGGTACGAGGGGATTAGGTTGAGGGTAA
AGGGGGACGGGAATACGTACAAGATCATCTTGAGGGACTCGGATCAGTGG
GACGGCCCGAGTTGGAGTACCATGGTCCCGACGAAGGACGGGATCTGGGA
GGATCTGGAGGTGCCCTTCGCGAGCTTGATCCCTGTGGCACGGACGAGGA
GCATCCCGCCCGAGCAGCGGCAGCCGTTTAAATTGGATAGCGTTTTTGCG
TTACAGATAATGCTGTCCAAATTTGCGTATGACGGGGAGGAAAACCCGAC
GTACAAAAACGGCCCATTCAAGTTGGTGATTCAGTCCATTGAAGCTTACC
AAGGCAATCAAGCCCCCCGCACTCCGCGATACGTCCACATTTCCTCTGCG
GGTGTTGAACGCCCGGGGCGACCCGGGATTGTCTTGGAGGAGGAGCCGCC
TGCTGTAAGGATGAATGACATGTTGGGCGGGATTCTGACTTATAAGCTGA
AGGGAGAGGATGAGATTAGGGGGAGTGGATTGCCGTACACGATCATTCGG
CCATGTGCGCTGACGGAGGAAGCGCCTAATATGCCTTTGCTTGTGGATGT
AGGGGATACGATCAAGGGGAAGGTCAGTAGGGACGATGTGGCTAGGCTGG
CGGTGGCGGCCTTGGCATGCCCGGATGCTTCTGATTTGACATTTGAGGTG
AAGAGTACTATTCCCTTTTCGCAGGCCTGGACGGAGGAAGATGCCGCTAA
GGTTCCATCGACGGATATGACCAAGGTATTTGCGGAAGTAAAAGGCAAGG
TGGGAAAGTAGAATGAGGGAAGGAAAGGGAGGATAGATGGGGTGGTTTTG
AGGAAGATGAAGAATTTGTGTAGGAAGCAAGTGATTTCACGTTGTTGACT
GGGCGATCGGTGTGAGAGACAATGAACAATTAAGAATAAATTAACAACAA
CAACAAAAGGAGGTTAAAGAACAGGGATTAAAAGACTTGGTT

Coding sequence (CDS) from alignment at chr1:1185334..1187525-

>NO01G04480.1 ID=NO01G04480.1|Name=NO01G04480.1|organism=Nannochloropsis oceanica|type=CDS|length=1800bp|location=Sequence derived from alignment at chr1:1185334..1187525- (Nannochloropsis oceanica)
ATGAGGTTGTCGTCGCCCATCTGTCTTCTGGCTTTTGCGGCCTGCTTTCT
AGTCATCTCACATGCTTTTGTTGGGATCACACCGATCCCTATGCATTCCA
CCAGCCTCTGTCGAAGCCGACACCCCGTGCGCATCATCGTCAGCATGGCT
GACGGCGAGGGAGGGGAAACCAAGCCCAAAGGCAAGGGATGGCCCGTGGG
CAGAGCCCTCCGCACCTTTCTCTCCTTCAATGGCCCTCGTTTTTTCACCG
GCCGTAGCAACAAAAAGGGAGCCGCTTCCGCGAGCGCTGCTATTGCCTTG
GCCACTCCTGTCCAGCTCGGTGCCAATCTTCCTTTGGGACACGGTGTGGT
CCTAGTTACAGGTGCTACAGGTGGGGTGGGCCGTCGTGTGGTCAGTCTGC
TTTTGGAGAAAGGCCTGCGTGTCCGTGCATTGGCACGAAACGAGCAAAAA
GCTCTAGCCATGCTGAGTGCGGGAAAGAGGCCTGACCCGGCCTCCAGTCG
GTTGGAAGTCGTCACTGCTGATATTCGCGATGCGGCTAGCTTGACACCTG
AGATTATGGAGGGGGTGGTTGCAGTGGTGGGATGTACAGCTGCGATTGTC
CAACCGAAGACCGGGGACTCGGAAGACCGAGCGAAATATTACCAGGGTAT
TGTGTTTTACGAACCGGAGACGTTAGATAGCCCTGAGGAGACTGATTACA
AGGGGGTACAGAATGTCTTGGCGGCGGCGAGAAAATATGGGGATGTGGGA
GGTACGAAGAAATTGTATTCCTGCAGCCCGGCTTTCATTGATCGATGGCA
GGATTTTGCGAGTCTGGATGATGTGGTGATGGGAGGGAGGAGTGACTCTA
AGTTTAGCTTGGTGCCGGGGGCGGGGGAGGAGGGGAATGACGATAGTCCA
AGTAGGATTGCGGGGGTCTTTGAAGGGGTGGTAACAACCGATAGAGGATT
CGCGAGTGGCGGATTTACGTCAATGAGGACCAGGAATTTGGAGCCGGCGT
TAGATTTGACGGGGTACGAGGGGATTAGGTTGAGGGTAAAGGGGGACGGG
AATACGTACAAGATCATCTTGAGGGACTCGGATCAGTGGGACGGCCCGAG
TTGGAGTACCATGGTCCCGACGAAGGACGGGATCTGGGAGGATCTGGAGG
TGCCCTTCGCGAGCTTGATCCCTGTGGCACGGACGAGGAGCATCCCGCCC
GAGCAGCGGCAGCCGTTTAAATTGGATAGCGTTTTTGCGTTACAGATAAT
GCTGTCCAAATTTGCGTATGACGGGGAGGAAAACCCGACGTACAAAAACG
GCCCATTCAAGTTGGTGATTCAGTCCATTGAAGCTTACCAAGGCAATCAA
GCCCCCCGCACTCCGCGATACGTCCACATTTCCTCTGCGGGTGTTGAACG
CCCGGGGCGACCCGGGATTGTCTTGGAGGAGGAGCCGCCTGCTGTAAGGA
TGAATGACATGTTGGGCGGGATTCTGACTTATAAGCTGAAGGGAGAGGAT
GAGATTAGGGGGAGTGGATTGCCGTACACGATCATTCGGCCATGTGCGCT
GACGGAGGAAGCGCCTAATATGCCTTTGCTTGTGGATGTAGGGGATACGA
TCAAGGGGAAGGTCAGTAGGGACGATGTGGCTAGGCTGGCGGTGGCGGCC
TTGGCATGCCCGGATGCTTCTGATTTGACATTTGAGGTGAAGAGTACTAT
TCCCTTTTCGCAGGCCTGGACGGAGGAAGATGCCGCTAAGGTTCCATCGA
CGGATATGACCAAGGTATTTGCGGAAGTAAAAGGCAAGGTGGGAAAGTAG

Synonyms

Publications