NO01G04450.1, NO01G04450.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G04450.1
Unique NameNO01G04450.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length724
Alignment locationchr1:1180547..1181524 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1180547..1181524 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO01G04450.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G04450NO01G04450Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G04450.1NO01G04450.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G04450.1.cds1NO01G04450.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G04450.1.cds2NO01G04450.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G04450.1 ID=NO01G04450.1|Name=NO01G04450.1|organism=Nannochloropsis oceanica|type=mRNA|length=724bp
AGACGTCCATAGGGAAAAGAAAGCTACAAGGATGGGGAAGTTGCAGTTGA
TCCTTGCTAGCGCAGTTCTACTACTGGCGTCGAATCCGAGTAGTGTACAA
GCCCTGGGCGGACGACGCTCGCAGCTTGTGGACGCGCTATCGGATCCGAC
TGCGAGAGAGAATCTATACTTCTTAAACGACATGGCCCGTGACCACTTCT
CTGAGTCACTCACGGGGATTGAGGACATGATAGAGGCGGGCCCGGAGGAC
GTTACTTTGGAAGGGGTCGGAATGCTTGGCAGTGGCAGCCTGACGAGCGC
CGCAGCAGCCCCAGACCACAAGGTTGAATCGCCATTGCTGTTTGAGTGGG
CTAACAGGTTATTACCAGAGACGGTCGGAACCAGCGGCAGCATCCTGGAT
GGTTGGTTGTCGTCGCTGTTCGGAGGCAAGCTGAAGGAGGAAGAAGGGCG
GACAGAGAAAGGGAGAGAGCTCTTTTTTGCCTCCCTGACGCGACCGCCGG
CTTGAGAGCCAGAAATGGATGGATTGGAAATGTTGTACCTTGATATGCCG
GCATCTTTATGATTCTGGCATACCGTGTGTGAATGAAAATGTTGCTTGTT
CAATCACAGAATGCTTTCGCGGTCGCGATGTGGAATAAATGAAGGGAAGA
CCTGTCTCGAGGCACGGCATGGTTTCATTTATAGGGTAGTTTCGTGGGTG
TTTTACACAAGTGACATTTAATTT
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protein sequence of NO01G04450.1

>NO01G04450.1-protein ID=NO01G04450.1-protein|Name=NO01G04450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=158bp
MGKLQLILASAVLLLASNPSSVQALGGRRSQLVDALSDPTARENLYFLND
MARDHFSESLTGIEDMIEAGPEDVTLEGVGMLGSGSLTSAAAAPDHKVES
PLLFEWANRLLPETVGTSGSILDGWLSSLFGGKLKEEEGRTEKGRELFFA
SLTRPPA*
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mRNA from alignment at chr1:1180547..1181524-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G04450.1 ID=NO01G04450.1|Name=NO01G04450.1|organism=Nannochloropsis oceanica|type=mRNA|length=978bp|location=Sequence derived from alignment at chr1:1180547..1181524- (Nannochloropsis oceanica)
AGACGTCCATAGGGAAAAGAAAGCTACAAGGATGGGGAAGTTGCAGTTGA
TCCTTGCTAGCGCAGTTCTACTACTGGCGTCGAATCCGAGGTAAAACATG
TCGAGGCGCGCACGGTATTCATCTCGATATCTAGACCCGTGTCTCGGAAA
GGAAGGCACTCCCATGCCCCACGGCATATGGCCCCCTTCGACCACAGATA
TGTGTCTCTTGCACATCCGCTCCTCCATGTTCTATCCTTCCCGCCTTGTC
TTCTCCCCGTTGACACACACATAGCCACCAGCCAACGCCTTACTTCCCTT
CCCTCCCTCCTTCCCTCCCTCCTTCCCTCCCATCCCTCCCACAGTAGTGT
ACAAGCCCTGGGCGGACGACGCTCGCAGCTTGTGGACGCGCTATCGGATC
CGACTGCGAGAGAGAATCTATACTTCTTAAACGACATGGCCCGTGACCAC
TTCTCTGAGTCACTCACGGGGATTGAGGACATGATAGAGGCGGGCCCGGA
GGACGTTACTTTGGAAGGGGTCGGAATGCTTGGCAGTGGCAGCCTGACGA
GCGCCGCAGCAGCCCCAGACCACAAGGTTGAATCGCCATTGCTGTTTGAG
TGGGCTAACAGGTTATTACCAGAGACGGTCGGAACCAGCGGCAGCATCCT
GGATGGTTGGTTGTCGTCGCTGTTCGGAGGCAAGCTGAAGGAGGAAGAAG
GGCGGACAGAGAAAGGGAGAGAGCTCTTTTTTGCCTCCCTGACGCGACCG
CCGGCTTGAGAGCCAGAAATGGATGGATTGGAAATGTTGTACCTTGATAT
GCCGGCATCTTTATGATTCTGGCATACCGTGTGTGAATGAAAATGTTGCT
TGTTCAATCACAGAATGCTTTCGCGGTCGCGATGTGGAATAAATGAAGGG
AAGACCTGTCTCGAGGCACGGCATGGTTTCATTTATAGGGTAGTTTCGTG
GGTGTTTTACACAAGTGACATTTAATTT
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Coding sequence (CDS) from alignment at chr1:1180547..1181524-

>NO01G04450.1 ID=NO01G04450.1|Name=NO01G04450.1|organism=Nannochloropsis oceanica|type=CDS|length=474bp|location=Sequence derived from alignment at chr1:1180547..1181524- (Nannochloropsis oceanica)
ATGGGGAAGTTGCAGTTGATCCTTGCTAGCGCAGTTCTACTACTGGCGTC
GAATCCGAGTAGTGTACAAGCCCTGGGCGGACGACGCTCGCAGCTTGTGG
ACGCGCTATCGGATCCGACTGCGAGAGAGAATCTATACTTCTTAAACGAC
ATGGCCCGTGACCACTTCTCTGAGTCACTCACGGGGATTGAGGACATGAT
AGAGGCGGGCCCGGAGGACGTTACTTTGGAAGGGGTCGGAATGCTTGGCA
GTGGCAGCCTGACGAGCGCCGCAGCAGCCCCAGACCACAAGGTTGAATCG
CCATTGCTGTTTGAGTGGGCTAACAGGTTATTACCAGAGACGGTCGGAAC
CAGCGGCAGCATCCTGGATGGTTGGTTGTCGTCGCTGTTCGGAGGCAAGC
TGAAGGAGGAAGAAGGGCGGACAGAGAAAGGGAGAGAGCTCTTTTTTGCC
TCCCTGACGCGACCGCCGGCTTGA
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Synonyms
Publications