NO01G04440.1, NO01G04440.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G04440.1
Unique NameNO01G04440.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length360
Alignment locationchr1:1179699..1180306 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1179699..1180306 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO01G04440.1 vs.
Match: EWM29365.1 (small nuclear ribonucleo protein [Nannochloropsis gaditana])

HSP 1 Score: 212.6 bits (540), Expect = 6.600e-52
Identity = 110/118 (93.22%), Postives = 116/118 (98.31%), Query Frame = 0 
Query:    1 MAAIKAVSVPVKLLKEGEGHVVTAELKSGEVYRGLLVESEDTMNVHLSDVTHTARNGKVRKLEQVYLRGSHLKLIVLPDILKNAPVFKKVQGMKKKESNKTAGRGRGGAFRGKKRKAG 119
            MA +KA+SVPVKLLKEGEGHVVTAELKSGEVYRGLL+ESEDTMNVHLSDVTHTARNGKVRKLEQVYLRGSHLK IVLP+ILK+APVFKKVQGMKKKES+KTAGRGRGGAFRGKKRKAG
Sbjct:    1 MATMKALSVPVKLLKEGEGHVVTAELKSGEVYRGLLMESEDTMNVHLSDVTHTARNGKVRKLEQVYLRGSHLKFIVLPEILKHAPVFKKVQGMKKKESSKTAGRGRGGAFRGKKRKAG 118
The following BLAST results are available for this feature:
BLAST of NO01G04440.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29365.16.600e-5293.22small nuclear ribonucleo protein [Nannochloropsis ... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G04440NO01G04440Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G04440.1NO01G04440.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G04440.1.cds1NO01G04440.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G04440.1.cds2NO01G04440.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G04440.1 ID=NO01G04440.1|Name=NO01G04440.1|organism=Nannochloropsis oceanica|type=mRNA|length=360bp
ATGGCCGCAATCAAAGCGGTAAGCGTGCCAGTCAAGCTACTAAAGGAAGG
CGAAGGCCACGTGGTGACAGCAGAGCTCAAGTCGGGGGAGGTATATCGCG
GGCTTTTGGTCGAGTCCGAGGACACAATGAACGTGCATTTGTCGGACGTG
ACGCATACGGCGCGCAACGGCAAGGTCCGTAAATTGGAGCAAGTGTATTT
GCGAGGGAGCCATCTGAAGCTTATTGTATTGCCTGATATTTTGAAGAACG
CACCGGTGTTTAAGAAGGTGCAAGGGATGAAGAAGAAGGAGTCGAATAAG
ACAGCGGGCCGAGGCAGAGGGGGAGCATTCCGGGGGAAGAAGAGAAAGGC
TGGTCAGTAA
back to top

protein sequence of NO01G04440.1

>NO01G04440.1-protein ID=NO01G04440.1-protein|Name=NO01G04440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=120bp
MAAIKAVSVPVKLLKEGEGHVVTAELKSGEVYRGLLVESEDTMNVHLSDV
THTARNGKVRKLEQVYLRGSHLKLIVLPDILKNAPVFKKVQGMKKKESNK
TAGRGRGGAFRGKKRKAGQ*
back to top

mRNA from alignment at chr1:1179699..1180306+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G04440.1 ID=NO01G04440.1|Name=NO01G04440.1|organism=Nannochloropsis oceanica|type=mRNA|length=608bp|location=Sequence derived from alignment at chr1:1179699..1180306+ (Nannochloropsis oceanica)
ATGGCCGCAATCAAAGGTACGTCCGCTCGGCCCCCCTCTTCTACTCCACC
TCCTCACACAGCACCAGCATAATCCAGACCCTAGCAGGCAAGATGAGGAT
CAGAACGGGGGGCGTGTACACAGTTAACACGCACGTATGACGATGATGGT
TTCGCGGCGGCCTGTGCCATTTTGTCGGTGGCCGATGTCACTGTCTCTCT
CGGTCCATACCCCACCACTCATCTCCCGCTTCTTTTCCGCATCTCCCCAC
CCTCCCTCCCACAGCGGTAAGCGTGCCAGTCAAGCTACTAAAGGAAGGCG
AAGGCCACGTGGTGACAGCAGAGCTCAAGTCGGGGGAGGTATATCGCGGG
CTTTTGGTCGAGTCCGAGGACACAATGAACGTGCATTTGTCGGACGTGAC
GCATACGGCGCGCAACGGCAAGGTCCGTAAATTGGAGCAAGTGTATTTGC
GAGGGAGCCATCTGAAGCTTATTGTATTGCCTGATATTTTGAAGAACGCA
CCGGTGTTTAAGAAGGTGCAAGGGATGAAGAAGAAGGAGTCGAATAAGAC
AGCGGGCCGAGGCAGAGGGGGAGCATTCCGGGGGAAGAAGAGAAAGGCTG
GTCAGTAA
back to top

Coding sequence (CDS) from alignment at chr1:1179699..1180306+

>NO01G04440.1 ID=NO01G04440.1|Name=NO01G04440.1|organism=Nannochloropsis oceanica|type=CDS|length=360bp|location=Sequence derived from alignment at chr1:1179699..1180306+ (Nannochloropsis oceanica)
ATGGCCGCAATCAAAGCGGTAAGCGTGCCAGTCAAGCTACTAAAGGAAGG
CGAAGGCCACGTGGTGACAGCAGAGCTCAAGTCGGGGGAGGTATATCGCG
GGCTTTTGGTCGAGTCCGAGGACACAATGAACGTGCATTTGTCGGACGTG
ACGCATACGGCGCGCAACGGCAAGGTCCGTAAATTGGAGCAAGTGTATTT
GCGAGGGAGCCATCTGAAGCTTATTGTATTGCCTGATATTTTGAAGAACG
CACCGGTGTTTAAGAAGGTGCAAGGGATGAAGAAGAAGGAGTCGAATAAG
ACAGCGGGCCGAGGCAGAGGGGGAGCATTCCGGGGGAAGAAGAGAAAGGC
TGGTCAGTAA
back to top
Synonyms
Publications