NO01G04420.1, NO01G04420.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G04420.1
Unique NameNO01G04420.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length977
Alignment locationchr1:1173979..1175166 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1173979..1175166 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G04420.1 vs.
Match: XP_005855474.1 (hypothetical protein NGA_0130400 [Nannochloropsis gaditana CCMP526]; EKU20876.1 hypothetical protein NGA_0130400 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 333.6 bits (854), Expect = 5.700e-88
Identity = 168/261 (64.37%), Postives = 198/261 (75.86%), Query Frame = 0 
Query:    5 NEEHQHLQAVNEHATKKIMKETDGRVMSQAEVAELEALFANHERVKAFPVSHPLLDIPASTQAKVVYFVRHAEALHNEAFKIRGRAAYSDPAFLDPELTALGIAQCGTLKPSVEAIQDSLDLVVVSPLRRTLMTAALAFDQRKGTPWVAHELVRERIGKNTCDKRRALTEIKQEYPSIDFAHMTHEDDVCWTPHHRETPAEMAKRGLIFLEWLRGRPEARIGVVTHSAFLSTLFGEVLDCHEPDMKRWFENAELRAVRLHL 266
            NE+ Q  + +      + ++E +GR ++  +V +L      H RVKAFPVS+   D+PA  Q K VYFVRHAEALHNEAFKIRGRAAY+DP+FLDP+LT LG++QC  LKPSVEAIQ S+DLVVVSPLRR LMTAALAFD R+   W+A E VRERIGKNTCDKRR    ++ EYP +DF ++  E+D  WT HHRETPAEMA+RGL FL WLRGRPE RIGVVTHSAFLSTLF EV +C +P M RWFENAELRAV L L
Sbjct:   14 NEQGQGQEELKLQQGGRKLREHEGRALTPEQVKDLCFSLTKHPRVKAFPVSNAPEDVPAGMQIKTVYFVRHAEALHNEAFKIRGRAAYADPSFLDPKLTKLGVSQCLALKPSVEAIQSSIDLVVVSPLRRALMTAALAFDHRREVSWIALETVRERIGKNTCDKRRRRGVLEAEYPDVDFENI-GEEDTRWTEHHRETPAEMAERGLEFLAWLRGRPEDRIGVVTHSAFLSTLFAEVFECADPAMSRWFENAELRAVYLIL 273
The following BLAST results are available for this feature:
BLAST of NO01G04420.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855474.15.700e-8864.37hypothetical protein NGA_0130400 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G04420NO01G04420Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G04420.1NO01G04420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G04420.1.cds1NO01G04420.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G04420.1.cds2NO01G04420.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G04420.1 ID=NO01G04420.1|Name=NO01G04420.1|organism=Nannochloropsis oceanica|type=mRNA|length=977bp
CAGGCCGTGCAGGAGTGTTAGAGTCTGTCTCTTTGTCTCCATTACACGTC
ATTGAGACGAGGATGACAAAACCGAACGAGGAGCACCAGCATTTGCAGGC
GGTTAATGAACATGCGACCAAGAAAATAATGAAGGAGACCGACGGACGAG
TCATGAGTCAGGCAGAGGTTGCGGAACTAGAGGCTTTATTTGCCAATCAC
GAGCGCGTCAAGGCTTTTCCTGTCTCACATCCGCTACTAGACATCCCTGC
GTCCACGCAAGCGAAAGTGGTGTACTTTGTCCGGCATGCGGAAGCCTTGC
ACAACGAGGCCTTCAAGATCCGTGGCCGGGCCGCCTACTCAGACCCCGCG
TTTCTTGACCCAGAACTGACAGCGCTGGGTATCGCGCAGTGCGGGACCCT
TAAACCCTCCGTGGAGGCCATTCAAGATTCCTTAGACTTGGTGGTCGTTT
CTCCCTTGCGTCGCACTCTCATGACGGCCGCCTTGGCATTCGATCAACGA
AAAGGCACACCCTGGGTCGCGCACGAATTGGTGCGAGAGCGGATCGGGAA
GAACACATGTGATAAACGGCGGGCATTGACGGAGATAAAACAGGAGTATC
CCTCAATTGATTTCGCGCATATGACACACGAAGACGACGTGTGTTGGACT
CCACACCACCGGGAAACCCCCGCCGAGATGGCCAAGCGAGGATTGATATT
TCTAGAATGGTTACGAGGTCGACCAGAGGCGAGAATTGGGGTGGTGACTC
ATTCGGCGTTTTTGTCGACGTTATTTGGAGAGGTCTTGGACTGTCACGAG
CCCGATATGAAGAGGTGGTTTGAGAACGCGGAATTGCGGGCCGTGAGGTT
GCATTTGTGAGGGAGGGGGAGGGAGGGAGAGAGGCAGGGAGGGAGGCAGG
GAGGAGAAAGGGGGGGTTTAAATATTTTGAAGTAATAGATTGGTTTTAAA
CGCGTAAGGAAATGACTCACTGAAAGT
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protein sequence of NO01G04420.1

>NO01G04420.1-protein ID=NO01G04420.1-protein|Name=NO01G04420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=266bp
MTKPNEEHQHLQAVNEHATKKIMKETDGRVMSQAEVAELEALFANHERVK
AFPVSHPLLDIPASTQAKVVYFVRHAEALHNEAFKIRGRAAYSDPAFLDP
ELTALGIAQCGTLKPSVEAIQDSLDLVVVSPLRRTLMTAALAFDQRKGTP
WVAHELVRERIGKNTCDKRRALTEIKQEYPSIDFAHMTHEDDVCWTPHHR
ETPAEMAKRGLIFLEWLRGRPEARIGVVTHSAFLSTLFGEVLDCHEPDMK
RWFENAELRAVRLHL*
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mRNA from alignment at chr1:1173979..1175166+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G04420.1 ID=NO01G04420.1|Name=NO01G04420.1|organism=Nannochloropsis oceanica|type=mRNA|length=1188bp|location=Sequence derived from alignment at chr1:1173979..1175166+ (Nannochloropsis oceanica)
CAGGCCGTGCAGGAGTGTTAGAGTCTGTCTCTTTGTCTCCATTACACGTC
ATTGAGACGAGGATGACAAAACCGAACGAGGAGCACCAGCATTTGCAGGC
GGTTAATGAACATGCGACCAAGAAAATAATGAAGGAGACCGACGGACGAG
TCATGAGTCAGGCAGAGGTTGCGGAACTAGAGGCTTTATTTGCCAATCAC
GAGCGCGTCAAGGCTTTTCCTGTCTCACATCCGCTACTAGACATCCCTGC
GTCCACGCAAGCGAAAGTGGTGTACTTTGTCCGGCATGCGGAAGGCAAGT
GGAGATGAGAGCGGGGATAAAGGAGAGAGAGTTCCCGTTCGAGCAACCTC
GCCCAGCGTTTGGTAATGATGCCTTTTAACTATATTGACCATAGATTGCA
GTAAGAGTGGACTTGTGTTAAGCCCCCTCCTCGGAGCCCTCCTCCGAAAA
AACCTCCCTACCAACCTCCTCACTCGCACACACAAATACCCTCCACACAC
TTCAGCCTTGCACAACGAGGCCTTCAAGATCCGTGGCCGGGCCGCCTACT
CAGACCCCGCGTTTCTTGACCCAGAACTGACAGCGCTGGGTATCGCGCAG
TGCGGGACCCTTAAACCCTCCGTGGAGGCCATTCAAGATTCCTTAGACTT
GGTGGTCGTTTCTCCCTTGCGTCGCACTCTCATGACGGCCGCCTTGGCAT
TCGATCAACGAAAAGGCACACCCTGGGTCGCGCACGAATTGGTGCGAGAG
CGGATCGGGAAGAACACATGTGATAAACGGCGGGCATTGACGGAGATAAA
ACAGGAGTATCCCTCAATTGATTTCGCGCATATGACACACGAAGACGACG
TGTGTTGGACTCCACACCACCGGGAAACCCCCGCCGAGATGGCCAAGCGA
GGATTGATATTTCTAGAATGGTTACGAGGTCGACCAGAGGCGAGAATTGG
GGTGGTGACTCATTCGGCGTTTTTGTCGACGTTATTTGGAGAGGTCTTGG
ACTGTCACGAGCCCGATATGAAGAGGTGGTTTGAGAACGCGGAATTGCGG
GCCGTGAGGTTGCATTTGTGAGGGAGGGGGAGGGAGGGAGAGAGGCAGGG
AGGGAGGCAGGGAGGAGAAAGGGGGGGTTTAAATATTTTGAAGTAATAGA
TTGGTTTTAAACGCGTAAGGAAATGACTCACTGAAAGT
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Coding sequence (CDS) from alignment at chr1:1173979..1175166+

>NO01G04420.1 ID=NO01G04420.1|Name=NO01G04420.1|organism=Nannochloropsis oceanica|type=CDS|length=798bp|location=Sequence derived from alignment at chr1:1173979..1175166+ (Nannochloropsis oceanica)
ATGACAAAACCGAACGAGGAGCACCAGCATTTGCAGGCGGTTAATGAACA
TGCGACCAAGAAAATAATGAAGGAGACCGACGGACGAGTCATGAGTCAGG
CAGAGGTTGCGGAACTAGAGGCTTTATTTGCCAATCACGAGCGCGTCAAG
GCTTTTCCTGTCTCACATCCGCTACTAGACATCCCTGCGTCCACGCAAGC
GAAAGTGGTGTACTTTGTCCGGCATGCGGAAGCCTTGCACAACGAGGCCT
TCAAGATCCGTGGCCGGGCCGCCTACTCAGACCCCGCGTTTCTTGACCCA
GAACTGACAGCGCTGGGTATCGCGCAGTGCGGGACCCTTAAACCCTCCGT
GGAGGCCATTCAAGATTCCTTAGACTTGGTGGTCGTTTCTCCCTTGCGTC
GCACTCTCATGACGGCCGCCTTGGCATTCGATCAACGAAAAGGCACACCC
TGGGTCGCGCACGAATTGGTGCGAGAGCGGATCGGGAAGAACACATGTGA
TAAACGGCGGGCATTGACGGAGATAAAACAGGAGTATCCCTCAATTGATT
TCGCGCATATGACACACGAAGACGACGTGTGTTGGACTCCACACCACCGG
GAAACCCCCGCCGAGATGGCCAAGCGAGGATTGATATTTCTAGAATGGTT
ACGAGGTCGACCAGAGGCGAGAATTGGGGTGGTGACTCATTCGGCGTTTT
TGTCGACGTTATTTGGAGAGGTCTTGGACTGTCACGAGCCCGATATGAAG
AGGTGGTTTGAGAACGCGGAATTGCGGGCCGTGAGGTTGCATTTGTGA
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Synonyms
Publications