NO01G04360.1, NO01G04360.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G04360.1
Unique NameNO01G04360.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1282
Alignment locationchr1:1162848..1164129 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1162848..1164129 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G04360.1 vs.
Match: EWM29361.1 (hypothetical protein Naga_100028g26 [Nannochloropsis gaditana])

HSP 1 Score: 348.6 bits (893), Expect = 1.900e-92
Identity = 173/244 (70.90%), Postives = 198/244 (81.15%), Query Frame = 0 
Query:   11 SATLQEEEVLISSSDDVQIAGKISNKFSPVAVVISHPYGPLGGSMMNNVVWAMTQHLSRFGFTTLRFNFRGVAPSTGRTSWTGVGEKEDMRAVCEYALTRLESPPQKLLIIGYSYGSVVGSALGGEMPQVHAYAAIAYPFSVACALTLFRQRSYFTLAAKGEKPKLFIMGSRDQFTGMGTFMRKVKLLPSPTEVVAMEGVDHFFFGKEKALCEIVQVWLEKVTGTHDLKAFLTSAAAAAAAAPG 255
            + TL+E +V + S D V IA K+SNK SP AVVISHPYGPLGG + NNVVWA+TQHLSRFGFTTLRFNFRGV PSTGRTSWTG GEK DMRAVCEYALT L+ PPQKLLI+GYS+GSVVG+ALGGEMP+VHAYAAIAYPFSVA ALTLF  R +   AA+G K KLF+MGS+DQFT +G F R+ + LP PTEVV MEG DHFFFG+E +LC IVQ WLEKV GT +LK  +T++A     APG
Sbjct:  146 ATTLREMDVRVPSRDGVHIACKVSNKRSPYAVVISHPYGPLGGHLGNNVVWALTQHLSRFGFTTLRFNFRGVLPSTGRTSWTGAGEKADMRAVCEYALTALQDPPQKLLIVGYSHGSVVGAALGGEMPEVHAYAAIAYPFSVAFALTLFNHRGFLDSAARGNKHKLFVMGSQDQFTRIGAFARRTRELPPPTEVVTMEGADHFFFGREASLCAIVQTWLEKVFGTDELK-LVTASADPLPLAPG 388
The following BLAST results are available for this feature:
BLAST of NO01G04360.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29361.11.900e-9270.90hypothetical protein Naga_100028g26 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G04360NO01G04360Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G04360.1NO01G04360.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G04360.1.cds1NO01G04360.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G04360.1 ID=NO01G04360.1|Name=NO01G04360.1|organism=Nannochloropsis oceanica|type=mRNA|length=1282bp
ACAGATAAAGAGAAAATTGTGGGCTCTTCAGCGTCTGGCCTATTGCCTCG
CGGTGGTCGGCCCGCCTGTGGGGAGGCAAGGGCACAGCTTCGTTCCTGCT
CTTAACCCCGGCCTCTTTCGTATCTTCCACTCCCGCGCCCACGACCAAGA
CAAGCACGTCCACGGGCCTACTTTGCGGCACAAAAGCAGTGGCTTCAGCG
CAGGGCTAGTACTTGCCACCATCGATCAAGATTCGCCAACTATAATCACC
CCCATGGCTAACTCCATGCGACTACCAAGCCCCTCCGCAACGCTTCAAGA
GGAAGAAGTCCTAATTTCTTCCAGCGACGACGTGCAGATTGCCGGCAAAA
TCAGTAATAAATTCAGTCCCGTTGCCGTCGTTATATCGCACCCCTACGGC
CCCCTGGGCGGGAGCATGATGAATAACGTTGTATGGGCTATGACCCAGCA
CTTGTCTCGCTTTGGCTTCACAACGCTCCGTTTTAACTTTCGTGGCGTGG
CCCCTTCGACAGGCCGGACATCCTGGACGGGTGTAGGCGAGAAAGAGGAC
ATGCGAGCAGTGTGTGAGTATGCATTGACCCGTCTTGAGAGTCCCCCGCA
GAAATTATTGATTATTGGATACAGCTACGGGAGTGTGGTCGGCTCGGCGT
TGGGGGGAGAGATGCCCCAGGTGCATGCATATGCGGCGATTGCTTATCCT
TTTAGCGTGGCATGTGCATTGACGCTGTTTCGACAGCGGAGCTATTTTAC
ATTAGCGGCGAAGGGCGAGAAACCGAAGCTTTTTATAATGGGGAGTCGGG
ACCAATTCACTGGGATGGGGACGTTCATGAGGAAGGTCAAGTTGCTGCCT
TCACCTACAGAAGTGGTGGCGATGGAGGGGGTGGATCACTTCTTCTTTGG
GAAAGAAAAGGCGTTGTGTGAAATTGTGCAGGTATGGCTGGAAAAAGTAA
CGGGCACGCATGATTTAAAAGCCTTTTTGACATCCGCTGCTGCTGCTGCT
GCTGCTGCTCCTGGTCCTGGTCCTGGTCCTGCTGCGGTCGCTATAGGAGG
GGAGGGCAGCAGCGATGGAGGAAAAAGAGGGAATAGCCAGAAAGAAAAGC
TACCAGAAGCTTGTGTGGACGGGAACCAGGAACTGTAAATTGAGTATTCG
TACGAGAAATTAAATAAAGGAGAGGCGTTGAACGCAAACATAGTACCCAT
ATGCATTCACACAAAACGCGACCGCAGCCCTCTTCAAATTGTTATTAAAG
AGGAACAAAGATGATACCATTCAATGGCAAAC
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protein sequence of NO01G04360.1

>NO01G04360.1-protein ID=NO01G04360.1-protein|Name=NO01G04360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=295bp
MANSMRLPSPSATLQEEEVLISSSDDVQIAGKISNKFSPVAVVISHPYGP
LGGSMMNNVVWAMTQHLSRFGFTTLRFNFRGVAPSTGRTSWTGVGEKEDM
RAVCEYALTRLESPPQKLLIIGYSYGSVVGSALGGEMPQVHAYAAIAYPF
SVACALTLFRQRSYFTLAAKGEKPKLFIMGSRDQFTGMGTFMRKVKLLPS
PTEVVAMEGVDHFFFGKEKALCEIVQVWLEKVTGTHDLKAFLTSAAAAAA
AAPGPGPGPAAVAIGGEGSSDGGKRGNSQKEKLPEACVDGNQEL*
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mRNA from alignment at chr1:1162848..1164129+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G04360.1 ID=NO01G04360.1|Name=NO01G04360.1|organism=Nannochloropsis oceanica|type=mRNA|length=1282bp|location=Sequence derived from alignment at chr1:1162848..1164129+ (Nannochloropsis oceanica)
ACAGATAAAGAGAAAATTGTGGGCTCTTCAGCGTCTGGCCTATTGCCTCG
CGGTGGTCGGCCCGCCTGTGGGGAGGCAAGGGCACAGCTTCGTTCCTGCT
CTTAACCCCGGCCTCTTTCGTATCTTCCACTCCCGCGCCCACGACCAAGA
CAAGCACGTCCACGGGCCTACTTTGCGGCACAAAAGCAGTGGCTTCAGCG
CAGGGCTAGTACTTGCCACCATCGATCAAGATTCGCCAACTATAATCACC
CCCATGGCTAACTCCATGCGACTACCAAGCCCCTCCGCAACGCTTCAAGA
GGAAGAAGTCCTAATTTCTTCCAGCGACGACGTGCAGATTGCCGGCAAAA
TCAGTAATAAATTCAGTCCCGTTGCCGTCGTTATATCGCACCCCTACGGC
CCCCTGGGCGGGAGCATGATGAATAACGTTGTATGGGCTATGACCCAGCA
CTTGTCTCGCTTTGGCTTCACAACGCTCCGTTTTAACTTTCGTGGCGTGG
CCCCTTCGACAGGCCGGACATCCTGGACGGGTGTAGGCGAGAAAGAGGAC
ATGCGAGCAGTGTGTGAGTATGCATTGACCCGTCTTGAGAGTCCCCCGCA
GAAATTATTGATTATTGGATACAGCTACGGGAGTGTGGTCGGCTCGGCGT
TGGGGGGAGAGATGCCCCAGGTGCATGCATATGCGGCGATTGCTTATCCT
TTTAGCGTGGCATGTGCATTGACGCTGTTTCGACAGCGGAGCTATTTTAC
ATTAGCGGCGAAGGGCGAGAAACCGAAGCTTTTTATAATGGGGAGTCGGG
ACCAATTCACTGGGATGGGGACGTTCATGAGGAAGGTCAAGTTGCTGCCT
TCACCTACAGAAGTGGTGGCGATGGAGGGGGTGGATCACTTCTTCTTTGG
GAAAGAAAAGGCGTTGTGTGAAATTGTGCAGGTATGGCTGGAAAAAGTAA
CGGGCACGCATGATTTAAAAGCCTTTTTGACATCCGCTGCTGCTGCTGCT
GCTGCTGCTCCTGGTCCTGGTCCTGGTCCTGCTGCGGTCGCTATAGGAGG
GGAGGGCAGCAGCGATGGAGGAAAAAGAGGGAATAGCCAGAAAGAAAAGC
TACCAGAAGCTTGTGTGGACGGGAACCAGGAACTGTAAATTGAGTATTCG
TACGAGAAATTAAATAAAGGAGAGGCGTTGAACGCAAACATAGTACCCAT
ATGCATTCACACAAAACGCGACCGCAGCCCTCTTCAAATTGTTATTAAAG
AGGAACAAAGATGATACCATTCAATGGCAAAC
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Coding sequence (CDS) from alignment at chr1:1162848..1164129+

>NO01G04360.1 ID=NO01G04360.1|Name=NO01G04360.1|organism=Nannochloropsis oceanica|type=CDS|length=885bp|location=Sequence derived from alignment at chr1:1162848..1164129+ (Nannochloropsis oceanica)
ATGGCTAACTCCATGCGACTACCAAGCCCCTCCGCAACGCTTCAAGAGGA
AGAAGTCCTAATTTCTTCCAGCGACGACGTGCAGATTGCCGGCAAAATCA
GTAATAAATTCAGTCCCGTTGCCGTCGTTATATCGCACCCCTACGGCCCC
CTGGGCGGGAGCATGATGAATAACGTTGTATGGGCTATGACCCAGCACTT
GTCTCGCTTTGGCTTCACAACGCTCCGTTTTAACTTTCGTGGCGTGGCCC
CTTCGACAGGCCGGACATCCTGGACGGGTGTAGGCGAGAAAGAGGACATG
CGAGCAGTGTGTGAGTATGCATTGACCCGTCTTGAGAGTCCCCCGCAGAA
ATTATTGATTATTGGATACAGCTACGGGAGTGTGGTCGGCTCGGCGTTGG
GGGGAGAGATGCCCCAGGTGCATGCATATGCGGCGATTGCTTATCCTTTT
AGCGTGGCATGTGCATTGACGCTGTTTCGACAGCGGAGCTATTTTACATT
AGCGGCGAAGGGCGAGAAACCGAAGCTTTTTATAATGGGGAGTCGGGACC
AATTCACTGGGATGGGGACGTTCATGAGGAAGGTCAAGTTGCTGCCTTCA
CCTACAGAAGTGGTGGCGATGGAGGGGGTGGATCACTTCTTCTTTGGGAA
AGAAAAGGCGTTGTGTGAAATTGTGCAGGTATGGCTGGAAAAAGTAACGG
GCACGCATGATTTAAAAGCCTTTTTGACATCCGCTGCTGCTGCTGCTGCT
GCTGCTCCTGGTCCTGGTCCTGGTCCTGCTGCGGTCGCTATAGGAGGGGA
GGGCAGCAGCGATGGAGGAAAAAGAGGGAATAGCCAGAAAGAAAAGCTAC
CAGAAGCTTGTGTGGACGGGAACCAGGAACTGTAA
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Synonyms
Publications