NO01G04350.1, NO01G04350.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G04350.1
Unique NameNO01G04350.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1095
Alignment locationchr1:1159618..1160712 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1159618..1160712 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G04350.1 vs.
Match: EWM29378.1 (Kua-ubiquitin conjugating enzyme hybrid, localization [Nannochloropsis gaditana])

HSP 1 Score: 458.0 bits (1177), Expect = 2.800e-125
Identity = 233/361 (64.54%), Postives = 273/361 (75.62%), Query Frame = 0 
Query:   11 ATLALSAAAVRGFVLPTRPMSRSQHHLRRPLASVRLTQDVEVLQSVVQAPE---------MQEGSRSTSPDLDLLPLTLE---PASFSIDPASIETRVKRKGPPPPVVVAAGDVLESTWVHRMHVATHYIVTLVALQQVATSYVVKGGATPADLAMLMATMAFSLVFSDFFSGVFHWSVDNYGSGKTPVLGAVIEAFQGHHDAPWTITYREFCNNVHKITKITIPAMMAVVLLHPSNPLLTLFAILFFNLQVLSQEFHKISHLTKPPAWAVMLQDMGLIISRKEHGQHHSNPFESNYCILTGTCNSFLDESGLFRVLERGVYEVTGVMPNCWKLGGPKFQAEMLLRSRGGADVATVETKKE 360
            ATLA+ A AV GFV+P     R  H    P +S R  + V+VLQS     +         +  G   + P  D   ++ E   P S   D   +E + KR+GPPPPV+VA GDVLES+W+HR +VATHY+VTL A+QQVA++Y   GG TP DL ML AT AFS++FSDFFSG+FHWSVDNYG+GKTPVLG VIEAFQGHHDAPWTITYR+F NNVHKITKITIPAM+A+V LHPS+PL+TLFA LFFNLQVLSQEFHK+SHL+KPPAWAV LQD+GLIISRKEHGQHHS+PFESNYCILTGTCN  LDESG FR LE+ VY+VTGVMPNCWK G  +F+AEML+  RGGAD   V+ K E
Sbjct:   10 ATLAIGAVAVHGFVIPAPSSRRISHD---PWSSTRFLRYVDVLQSTTLPSDTPGISSNSIVTNGLYPSDPVDDASCVSTETNLPISLRNDRI-VEKKSKRRGPPPPVMVADGDVLESSWIHRSYVATHYLVTLAAMQQVASTYAGNGGVTPGDLTMLAATTAFSVLFSDFFSGIFHWSVDNYGNGKTPVLGTVIEAFQGHHDAPWTITYRQFSNNVHKITKITIPAMLAIVALHPSSPLVTLFATLFFNLQVLSQEFHKLSHLSKPPAWAVRLQDLGLIISRKEHGQHHSSPFESNYCILTGTCNRMLDESGFFRFLEKAVYDVTGVMPNCWKQGSSEFRAEMLVGRRGGADANMVDEKME 366
The following BLAST results are available for this feature:
BLAST of NO01G04350.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29378.12.800e-12564.54Kua-ubiquitin conjugating enzyme hybrid, localizat... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G04350NO01G04350Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G04350.1NO01G04350.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G04350.1.cds1NO01G04350.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G04350.1 ID=NO01G04350.1|Name=NO01G04350.1|organism=Nannochloropsis oceanica|type=mRNA|length=1095bp
ATGAAGACAGCTAATGCCGCTGCCGCCGCCGCCACGCTGGCATTGTCTGC
AGCCGCCGTGCGAGGCTTTGTGCTACCCACGAGACCGATGTCGAGATCTC
AGCACCATTTGCGAAGGCCTCTGGCCTCGGTACGTCTGACTCAAGACGTC
GAGGTTCTACAATCGGTGGTCCAGGCCCCTGAAATGCAAGAAGGTAGCAG
AAGCACCAGCCCCGATCTCGATCTATTGCCCCTTACCCTCGAGCCAGCCT
CTTTCTCCATTGACCCCGCCTCCATCGAAACGCGCGTTAAACGCAAGGGG
CCGCCCCCGCCAGTGGTCGTGGCAGCAGGCGACGTGTTGGAAAGCACATG
GGTGCACCGCATGCACGTCGCAACACACTACATCGTCACCCTAGTCGCTC
TGCAGCAAGTAGCTACAAGCTATGTGGTCAAGGGCGGGGCTACCCCGGCA
GACTTGGCGATGTTGATGGCTACAATGGCATTCTCACTCGTTTTTTCTGA
TTTCTTCAGCGGAGTTTTTCACTGGTCGGTGGACAACTACGGCTCGGGTA
AGACACCTGTACTGGGGGCCGTGATAGAGGCTTTCCAGGGACATCACGAT
GCGCCTTGGACTATTACATACCGGGAATTTTGCAACAACGTGCACAAGAT
TACTAAGATAACCATTCCGGCGATGATGGCTGTGGTCCTGCTGCATCCAA
GCAACCCCCTCTTGACCCTTTTTGCGATCTTGTTTTTCAATCTGCAGGTG
CTTAGCCAGGAATTTCATAAGATCTCGCACTTGACCAAGCCCCCTGCATG
GGCCGTGATGTTGCAGGACATGGGCTTGATAATAAGCAGGAAAGAGCATG
GCCAGCATCATTCGAATCCGTTCGAGAGCAACTATTGTATTTTGACTGGG
ACGTGTAATTCCTTTTTGGATGAGAGTGGGCTCTTCCGGGTCTTGGAAAG
GGGGGTTTACGAGGTTACCGGGGTGATGCCCAACTGCTGGAAGCTGGGCG
GGCCGAAATTTCAGGCGGAGATGCTCTTGAGATCACGTGGAGGGGCGGAC
GTGGCGACGGTGGAGACGAAGAAGGAGGAGGAAAAATTGCAATAA
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protein sequence of NO01G04350.1

>NO01G04350.1-protein ID=NO01G04350.1-protein|Name=NO01G04350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=365bp
MKTANAAAAAATLALSAAAVRGFVLPTRPMSRSQHHLRRPLASVRLTQDV
EVLQSVVQAPEMQEGSRSTSPDLDLLPLTLEPASFSIDPASIETRVKRKG
PPPPVVVAAGDVLESTWVHRMHVATHYIVTLVALQQVATSYVVKGGATPA
DLAMLMATMAFSLVFSDFFSGVFHWSVDNYGSGKTPVLGAVIEAFQGHHD
APWTITYREFCNNVHKITKITIPAMMAVVLLHPSNPLLTLFAILFFNLQV
LSQEFHKISHLTKPPAWAVMLQDMGLIISRKEHGQHHSNPFESNYCILTG
TCNSFLDESGLFRVLERGVYEVTGVMPNCWKLGGPKFQAEMLLRSRGGAD
VATVETKKEEEKLQ*
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mRNA from alignment at chr1:1159618..1160712+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G04350.1 ID=NO01G04350.1|Name=NO01G04350.1|organism=Nannochloropsis oceanica|type=mRNA|length=1095bp|location=Sequence derived from alignment at chr1:1159618..1160712+ (Nannochloropsis oceanica)
ATGAAGACAGCTAATGCCGCTGCCGCCGCCGCCACGCTGGCATTGTCTGC
AGCCGCCGTGCGAGGCTTTGTGCTACCCACGAGACCGATGTCGAGATCTC
AGCACCATTTGCGAAGGCCTCTGGCCTCGGTACGTCTGACTCAAGACGTC
GAGGTTCTACAATCGGTGGTCCAGGCCCCTGAAATGCAAGAAGGTAGCAG
AAGCACCAGCCCCGATCTCGATCTATTGCCCCTTACCCTCGAGCCAGCCT
CTTTCTCCATTGACCCCGCCTCCATCGAAACGCGCGTTAAACGCAAGGGG
CCGCCCCCGCCAGTGGTCGTGGCAGCAGGCGACGTGTTGGAAAGCACATG
GGTGCACCGCATGCACGTCGCAACACACTACATCGTCACCCTAGTCGCTC
TGCAGCAAGTAGCTACAAGCTATGTGGTCAAGGGCGGGGCTACCCCGGCA
GACTTGGCGATGTTGATGGCTACAATGGCATTCTCACTCGTTTTTTCTGA
TTTCTTCAGCGGAGTTTTTCACTGGTCGGTGGACAACTACGGCTCGGGTA
AGACACCTGTACTGGGGGCCGTGATAGAGGCTTTCCAGGGACATCACGAT
GCGCCTTGGACTATTACATACCGGGAATTTTGCAACAACGTGCACAAGAT
TACTAAGATAACCATTCCGGCGATGATGGCTGTGGTCCTGCTGCATCCAA
GCAACCCCCTCTTGACCCTTTTTGCGATCTTGTTTTTCAATCTGCAGGTG
CTTAGCCAGGAATTTCATAAGATCTCGCACTTGACCAAGCCCCCTGCATG
GGCCGTGATGTTGCAGGACATGGGCTTGATAATAAGCAGGAAAGAGCATG
GCCAGCATCATTCGAATCCGTTCGAGAGCAACTATTGTATTTTGACTGGG
ACGTGTAATTCCTTTTTGGATGAGAGTGGGCTCTTCCGGGTCTTGGAAAG
GGGGGTTTACGAGGTTACCGGGGTGATGCCCAACTGCTGGAAGCTGGGCG
GGCCGAAATTTCAGGCGGAGATGCTCTTGAGATCACGTGGAGGGGCGGAC
GTGGCGACGGTGGAGACGAAGAAGGAGGAGGAAAAATTGCAATAA
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Coding sequence (CDS) from alignment at chr1:1159618..1160712+

>NO01G04350.1 ID=NO01G04350.1|Name=NO01G04350.1|organism=Nannochloropsis oceanica|type=CDS|length=1095bp|location=Sequence derived from alignment at chr1:1159618..1160712+ (Nannochloropsis oceanica)
ATGAAGACAGCTAATGCCGCTGCCGCCGCCGCCACGCTGGCATTGTCTGC
AGCCGCCGTGCGAGGCTTTGTGCTACCCACGAGACCGATGTCGAGATCTC
AGCACCATTTGCGAAGGCCTCTGGCCTCGGTACGTCTGACTCAAGACGTC
GAGGTTCTACAATCGGTGGTCCAGGCCCCTGAAATGCAAGAAGGTAGCAG
AAGCACCAGCCCCGATCTCGATCTATTGCCCCTTACCCTCGAGCCAGCCT
CTTTCTCCATTGACCCCGCCTCCATCGAAACGCGCGTTAAACGCAAGGGG
CCGCCCCCGCCAGTGGTCGTGGCAGCAGGCGACGTGTTGGAAAGCACATG
GGTGCACCGCATGCACGTCGCAACACACTACATCGTCACCCTAGTCGCTC
TGCAGCAAGTAGCTACAAGCTATGTGGTCAAGGGCGGGGCTACCCCGGCA
GACTTGGCGATGTTGATGGCTACAATGGCATTCTCACTCGTTTTTTCTGA
TTTCTTCAGCGGAGTTTTTCACTGGTCGGTGGACAACTACGGCTCGGGTA
AGACACCTGTACTGGGGGCCGTGATAGAGGCTTTCCAGGGACATCACGAT
GCGCCTTGGACTATTACATACCGGGAATTTTGCAACAACGTGCACAAGAT
TACTAAGATAACCATTCCGGCGATGATGGCTGTGGTCCTGCTGCATCCAA
GCAACCCCCTCTTGACCCTTTTTGCGATCTTGTTTTTCAATCTGCAGGTG
CTTAGCCAGGAATTTCATAAGATCTCGCACTTGACCAAGCCCCCTGCATG
GGCCGTGATGTTGCAGGACATGGGCTTGATAATAAGCAGGAAAGAGCATG
GCCAGCATCATTCGAATCCGTTCGAGAGCAACTATTGTATTTTGACTGGG
ACGTGTAATTCCTTTTTGGATGAGAGTGGGCTCTTCCGGGTCTTGGAAAG
GGGGGTTTACGAGGTTACCGGGGTGATGCCCAACTGCTGGAAGCTGGGCG
GGCCGAAATTTCAGGCGGAGATGCTCTTGAGATCACGTGGAGGGGCGGAC
GTGGCGACGGTGGAGACGAAGAAGGAGGAGGAAAAATTGCAATAA
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Synonyms
Publications