NO01G04330.1, NO01G04330.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G04330.1
Unique NameNO01G04330.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1957
Alignment locationchr1:1156961..1158917 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1156961..1158917 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO01G04330.1 vs.
Match: PFX33270.1 (hypothetical protein AWC38_SpisGene1872 [Stylophora pistillata])

HSP 1 Score: 86.7 bits (213), Expect = 2.700e-13
Identity = 83/322 (25.78%), Postives = 133/322 (41.30%), Query Frame = 0
Query:  143 WVMKHKQLQDDMLSGEKPKRFLV-----VRPDCGYCGMCNILDAITGTYLLAVLTDRALVIDWRYPGKRGWQEGTNYLDPRLVDWKAQSAVGADT------FDWSGNKTLLLHGWNDGATIKDLLKIPEVFSET-----LDVEENEAIILVHMGQSPATSLRINPEAKKRAVAKGL--LAEDTVWDEHWDQQFKGCALRVLFQPSKILKDFYCQVQGE---GSSEGIGVHVRTGDD----------RTWNEKYAYPTDEHYRFARCAEGMRQAMLEDDFRAMVGAVASEGGRRVNVERWHVASDYQQVVDDIRARFPEQAAS 434
            W  K+++L DD+LS  + +++LV      R  C  CG  N L A+   + L+VLTDRA +IDWR P     +   N+L PR + W     +   T        W   KT +     +G  I++       F+ T      D    E   + +  +   T    N    KRA   G+  L  +T           GCA   LF  SK L+    +++ +        IG+H+RTGDD          RTWN K         +F  CA  +      ++         ++G  +V   RW +++D +QV   ++  +P++  +
Sbjct:  264 WQEKYRELHDDILSKRREEKYLVYLCPGTRQGC--CGYGNRLRAVASLFYLSVLTDRAFLIDWRAP-----EPIENHLTPRNIQWNYSEPIDICTGLQIRKHYWGSTKTDVREA--EGYIIQEPKHFKRWFTSTDLKQFFDWPVEEITTIWYFAEGGITK---NSFLMKRAKELGIAPLISNTP-----KFNLIGCAFDFLFSKSKALESKLDEMRSQLQFHKGPVIGIHIRTGDDQFDYFSSENIRTWNAKNV------SKFFDCATKVESEFFFNE---------TDGPEKV---RWFLSTDNEQVRTLVQGIYPQKVVT 550          
The following BLAST results are available for this feature:
BLAST of NO01G04330.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
PFX33270.12.700e-1325.78hypothetical protein AWC38_SpisGene1872 [Stylophor... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G04330NO01G04330Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G04330.1NO01G04330.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G04330.1.cds1NO01G04330.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G04330.1 ID=NO01G04330.1|Name=NO01G04330.1|organism=Nannochloropsis oceanica|type=mRNA|length=1957bp
CCACAGGTCCTGTTGTACCTTTCCGCCCATCTGCTTGCTTTTGGTTTTTC
CCTTTTGAACCCCCAAGAACACATAAGCAACAACATCAAGAGTCACCATG
ACCGTAGGCTACTGCCACCATTATCTTCAGTGGAGGAGAACCCCTGGGCT
CCAAGTTTTTGTATTGTCGTTCGTGACCACCATATTAATCCTTGGTGGCC
ATATTGCGTCAAAGGGCGGTGGTGTGGGAGCCATACGCGCTCTGCCACAT
GCCATATCTGATGCCCGCATTGCGTTCCTCGAGGTAACCTTTGGGGGCAG
CAGACCACTACCAAAAGCCGCCTCAGCAGAACCACAACGATCAGATGCCA
AACATACAGGGGAAAAGTTTGAGCCGGTTGCGATACTACCCAAAGCGGAG
GAAAGGCCAGCAGCAGCATCAGCAGCACCAGTAGCACCAGCACCACTGCT
CCTTCATGGAGACTTGTCCCCGTCCCAAAAAGAAATGCCGTCCAACCGAG
AAACACGGTGTCTGATCCAAGATTGGGTTATGAAGCACAAACAATTGCAA
GACGACATGCTTTCTGGGGAAAAGCCCAAACGCTTTTTGGTCGTGCGACC
CGACTGTGGATATTGCGGGATGTGCAATATATTGGATGCCATCACCGGGA
CATATTTATTGGCCGTCTTGACAGATCGTGCTTTGGTGATCGATTGGAGA
TATCCAGGCAAGCGTGGATGGCAGGAGGGCACCAATTACTTGGATCCTCG
GCTTGTGGATTGGAAGGCTCAAAGCGCCGTGGGTGCTGATACGTTTGATT
GGTCCGGAAACAAAACCCTGTTGCTGCATGGGTGGAACGATGGGGCGACA
ATCAAAGATCTGCTGAAGATTCCTGAGGTATTTAGTGAGACGTTAGATGT
TGAGGAGAATGAAGCCATCATTTTGGTGCATATGGGACAGAGTCCCGCGA
CGAGCTTGAGAATTAACCCGGAGGCCAAGAAGCGGGCAGTTGCCAAGGGG
CTCTTGGCTGAAGACACAGTGTGGGATGAACATTGGGACCAGCAGTTCAA
GGGATGTGCGTTGCGTGTATTGTTTCAACCTTCCAAAATATTGAAGGATT
TTTATTGTCAAGTGCAGGGGGAGGGGTCGTCGGAAGGGATTGGGGTGCAT
GTGAGGACGGGCGATGACCGAACCTGGAATGAAAAGTATGCTTACCCAAC
CGACGAGCATTATCGATTCGCGCGCTGTGCAGAGGGGATGCGGCAAGCCA
TGTTGGAAGATGACTTTAGAGCAATGGTTGGGGCGGTTGCTTCTGAGGGT
GGAAGGAGGGTAAATGTGGAACGGTGGCATGTGGCTTCGGATTACCAGCA
GGTGGTCGATGATATCCGGGCGCGGTTTCCCGAGCAGGCTGCGTCAATGG
ATACGTTTGAAAGCGAGGAAATGAAACAAGCAGGGGCCATCCGCGTGCAC
TATTCCAATACCCCATACCAGCAATTTGCGCTCGGGCCGTTGATGGATCT
GATCAAGTTGTCGAGTGGGCTGGCGGTGATTGGTACATGTCGAAGCACTT
ATAGTGCCGCTGCGGGCTCTTTTGGGATGCTGCCAAATGAGCTAACGCTG
TTGAAACGCACCAATTTTGAGATGAGGTACTTTCACTCGACTGCGTGTCC
GGAGATGCCGAAAGAGGATGAGGCGGAGGGGATGTGCCGCGAGCTCTTGG
AGTCAAACAGGAAGTTAGTCGAAGAGGTGTTGAGGACACCGCCATTCATC
ACTTGTCCTTTATTTGGTGAAAGTGGTGACGCTGATGATGGCGGTGGTGG
TGGTAAATATGATGATCTGAGGAGTAGGATAAATAGATGAATGGTGGGCC
TGCTATTGACTGTGGCTACTGTTGCCATGCTTCATATGCGTCGGCGTCAA
AATGATAGCATGGGTGGGTAGAAGCAGGGCACAAGAGCTAAAAAGATAAT
GTTTATA
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protein sequence of NO01G04330.1

>NO01G04330.1-protein ID=NO01G04330.1-protein|Name=NO01G04330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=581bp
MTVGYCHHYLQWRRTPGLQVFVLSFVTTILILGGHIASKGGGVGAIRALP
HAISDARIAFLEVTFGGSRPLPKAASAEPQRSDAKHTGEKFEPVAILPKA
EERPAAASAAPVAPAPLLLHGDLSPSQKEMPSNRETRCLIQDWVMKHKQL
QDDMLSGEKPKRFLVVRPDCGYCGMCNILDAITGTYLLAVLTDRALVIDW
RYPGKRGWQEGTNYLDPRLVDWKAQSAVGADTFDWSGNKTLLLHGWNDGA
TIKDLLKIPEVFSETLDVEENEAIILVHMGQSPATSLRINPEAKKRAVAK
GLLAEDTVWDEHWDQQFKGCALRVLFQPSKILKDFYCQVQGEGSSEGIGV
HVRTGDDRTWNEKYAYPTDEHYRFARCAEGMRQAMLEDDFRAMVGAVASE
GGRRVNVERWHVASDYQQVVDDIRARFPEQAASMDTFESEEMKQAGAIRV
HYSNTPYQQFALGPLMDLIKLSSGLAVIGTCRSTYSAAAGSFGMLPNELT
LLKRTNFEMRYFHSTACPEMPKEDEAEGMCRELLESNRKLVEEVLRTPPF
ITCPLFGESGDADDGGGGGKYDDLRSRINR*
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mRNA from alignment at chr1:1156961..1158917-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G04330.1 ID=NO01G04330.1|Name=NO01G04330.1|organism=Nannochloropsis oceanica|type=mRNA|length=1957bp|location=Sequence derived from alignment at chr1:1156961..1158917- (Nannochloropsis oceanica)
CCACAGGTCCTGTTGTACCTTTCCGCCCATCTGCTTGCTTTTGGTTTTTC CCTTTTGAACCCCCAAGAACACATAAGCAACAACATCAAGAGTCACCATG ACCGTAGGCTACTGCCACCATTATCTTCAGTGGAGGAGAACCCCTGGGCT CCAAGTTTTTGTATTGTCGTTCGTGACCACCATATTAATCCTTGGTGGCC ATATTGCGTCAAAGGGCGGTGGTGTGGGAGCCATACGCGCTCTGCCACAT GCCATATCTGATGCCCGCATTGCGTTCCTCGAGGTAACCTTTGGGGGCAG CAGACCACTACCAAAAGCCGCCTCAGCAGAACCACAACGATCAGATGCCA AACATACAGGGGAAAAGTTTGAGCCGGTTGCGATACTACCCAAAGCGGAG GAAAGGCCAGCAGCAGCATCAGCAGCACCAGTAGCACCAGCACCACTGCT CCTTCATGGAGACTTGTCCCCGTCCCAAAAAGAAATGCCGTCCAACCGAG AAACACGGTGTCTGATCCAAGATTGGGTTATGAAGCACAAACAATTGCAA GACGACATGCTTTCTGGGGAAAAGCCCAAACGCTTTTTGGTCGTGCGACC CGACTGTGGATATTGCGGGATGTGCAATATATTGGATGCCATCACCGGGA CATATTTATTGGCCGTCTTGACAGATCGTGCTTTGGTGATCGATTGGAGA TATCCAGGCAAGCGTGGATGGCAGGAGGGCACCAATTACTTGGATCCTCG GCTTGTGGATTGGAAGGCTCAAAGCGCCGTGGGTGCTGATACGTTTGATT GGTCCGGAAACAAAACCCTGTTGCTGCATGGGTGGAACGATGGGGCGACA ATCAAAGATCTGCTGAAGATTCCTGAGGTATTTAGTGAGACGTTAGATGT TGAGGAGAATGAAGCCATCATTTTGGTGCATATGGGACAGAGTCCCGCGA CGAGCTTGAGAATTAACCCGGAGGCCAAGAAGCGGGCAGTTGCCAAGGGG CTCTTGGCTGAAGACACAGTGTGGGATGAACATTGGGACCAGCAGTTCAA GGGATGTGCGTTGCGTGTATTGTTTCAACCTTCCAAAATATTGAAGGATT TTTATTGTCAAGTGCAGGGGGAGGGGTCGTCGGAAGGGATTGGGGTGCAT GTGAGGACGGGCGATGACCGAACCTGGAATGAAAAGTATGCTTACCCAAC CGACGAGCATTATCGATTCGCGCGCTGTGCAGAGGGGATGCGGCAAGCCA TGTTGGAAGATGACTTTAGAGCAATGGTTGGGGCGGTTGCTTCTGAGGGT GGAAGGAGGGTAAATGTGGAACGGTGGCATGTGGCTTCGGATTACCAGCA GGTGGTCGATGATATCCGGGCGCGGTTTCCCGAGCAGGCTGCGTCAATGG ATACGTTTGAAAGCGAGGAAATGAAACAAGCAGGGGCCATCCGCGTGCAC TATTCCAATACCCCATACCAGCAATTTGCGCTCGGGCCGTTGATGGATCT GATCAAGTTGTCGAGTGGGCTGGCGGTGATTGGTACATGTCGAAGCACTT ATAGTGCCGCTGCGGGCTCTTTTGGGATGCTGCCAAATGAGCTAACGCTG TTGAAACGCACCAATTTTGAGATGAGGTACTTTCACTCGACTGCGTGTCC GGAGATGCCGAAAGAGGATGAGGCGGAGGGGATGTGCCGCGAGCTCTTGG AGTCAAACAGGAAGTTAGTCGAAGAGGTGTTGAGGACACCGCCATTCATC ACTTGTCCTTTATTTGGTGAAAGTGGTGACGCTGATGATGGCGGTGGTGG TGGTAAATATGATGATCTGAGGAGTAGGATAAATAGATGAATGGTGGGCC TGCTATTGACTGTGGCTACTGTTGCCATGCTTCATATGCGTCGGCGTCAA AATGATAGCATGGGTGGGTAGAAGCAGGGCACAAGAGCTAAAAAGATAAT GTTTATA
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Coding sequence (CDS) from alignment at chr1:1156961..1158917-

>NO01G04330.1 ID=NO01G04330.1|Name=NO01G04330.1|organism=Nannochloropsis oceanica|type=CDS|length=1743bp|location=Sequence derived from alignment at chr1:1156961..1158917- (Nannochloropsis oceanica)
ATGACCGTAGGCTACTGCCACCATTATCTTCAGTGGAGGAGAACCCCTGG
GCTCCAAGTTTTTGTATTGTCGTTCGTGACCACCATATTAATCCTTGGTG
GCCATATTGCGTCAAAGGGCGGTGGTGTGGGAGCCATACGCGCTCTGCCA
CATGCCATATCTGATGCCCGCATTGCGTTCCTCGAGGTAACCTTTGGGGG
CAGCAGACCACTACCAAAAGCCGCCTCAGCAGAACCACAACGATCAGATG
CCAAACATACAGGGGAAAAGTTTGAGCCGGTTGCGATACTACCCAAAGCG
GAGGAAAGGCCAGCAGCAGCATCAGCAGCACCAGTAGCACCAGCACCACT
GCTCCTTCATGGAGACTTGTCCCCGTCCCAAAAAGAAATGCCGTCCAACC
GAGAAACACGGTGTCTGATCCAAGATTGGGTTATGAAGCACAAACAATTG
CAAGACGACATGCTTTCTGGGGAAAAGCCCAAACGCTTTTTGGTCGTGCG
ACCCGACTGTGGATATTGCGGGATGTGCAATATATTGGATGCCATCACCG
GGACATATTTATTGGCCGTCTTGACAGATCGTGCTTTGGTGATCGATTGG
AGATATCCAGGCAAGCGTGGATGGCAGGAGGGCACCAATTACTTGGATCC
TCGGCTTGTGGATTGGAAGGCTCAAAGCGCCGTGGGTGCTGATACGTTTG
ATTGGTCCGGAAACAAAACCCTGTTGCTGCATGGGTGGAACGATGGGGCG
ACAATCAAAGATCTGCTGAAGATTCCTGAGGTATTTAGTGAGACGTTAGA
TGTTGAGGAGAATGAAGCCATCATTTTGGTGCATATGGGACAGAGTCCCG
CGACGAGCTTGAGAATTAACCCGGAGGCCAAGAAGCGGGCAGTTGCCAAG
GGGCTCTTGGCTGAAGACACAGTGTGGGATGAACATTGGGACCAGCAGTT
CAAGGGATGTGCGTTGCGTGTATTGTTTCAACCTTCCAAAATATTGAAGG
ATTTTTATTGTCAAGTGCAGGGGGAGGGGTCGTCGGAAGGGATTGGGGTG
CATGTGAGGACGGGCGATGACCGAACCTGGAATGAAAAGTATGCTTACCC
AACCGACGAGCATTATCGATTCGCGCGCTGTGCAGAGGGGATGCGGCAAG
CCATGTTGGAAGATGACTTTAGAGCAATGGTTGGGGCGGTTGCTTCTGAG
GGTGGAAGGAGGGTAAATGTGGAACGGTGGCATGTGGCTTCGGATTACCA
GCAGGTGGTCGATGATATCCGGGCGCGGTTTCCCGAGCAGGCTGCGTCAA
TGGATACGTTTGAAAGCGAGGAAATGAAACAAGCAGGGGCCATCCGCGTG
CACTATTCCAATACCCCATACCAGCAATTTGCGCTCGGGCCGTTGATGGA
TCTGATCAAGTTGTCGAGTGGGCTGGCGGTGATTGGTACATGTCGAAGCA
CTTATAGTGCCGCTGCGGGCTCTTTTGGGATGCTGCCAAATGAGCTAACG
CTGTTGAAACGCACCAATTTTGAGATGAGGTACTTTCACTCGACTGCGTG
TCCGGAGATGCCGAAAGAGGATGAGGCGGAGGGGATGTGCCGCGAGCTCT
TGGAGTCAAACAGGAAGTTAGTCGAAGAGGTGTTGAGGACACCGCCATTC
ATCACTTGTCCTTTATTTGGTGAAAGTGGTGACGCTGATGATGGCGGTGG
TGGTGGTAAATATGATGATCTGAGGAGTAGGATAAATAGATGA
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Synonyms
Publications