|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:1156961..1158917 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G04330.1 vs.
Match: PFX33270.1 (hypothetical protein AWC38_SpisGene1872 [Stylophora pistillata]) HSP 1 Score: 86.7 bits (213), Expect = 2.700e-13 Identity = 83/322 (25.78%), Postives = 133/322 (41.30%), Query Frame = 0
Query: 143 WVMKHKQLQDDMLSGEKPKRFLV-----VRPDCGYCGMCNILDAITGTYLLAVLTDRALVIDWRYPGKRGWQEGTNYLDPRLVDWKAQSAVGADT------FDWSGNKTLLLHGWNDGATIKDLLKIPEVFSET-----LDVEENEAIILVHMGQSPATSLRINPEAKKRAVAKGL--LAEDTVWDEHWDQQFKGCALRVLFQPSKILKDFYCQVQGE---GSSEGIGVHVRTGDD----------RTWNEKYAYPTDEHYRFARCAEGMRQAMLEDDFRAMVGAVASEGGRRVNVERWHVASDYQQVVDDIRARFPEQAAS 434
W K+++L DD+LS + +++LV R C CG N L A+ + L+VLTDRA +IDWR P + N+L PR + W + T W KT + +G I++ F+ T D E + + + T N KRA G+ L +T GCA LF SK L+ +++ + IG+H+RTGDD RTWN K +F CA + ++ ++G +V RW +++D +QV ++ +P++ +
Sbjct: 264 WQEKYRELHDDILSKRREEKYLVYLCPGTRQGC--CGYGNRLRAVASLFYLSVLTDRAFLIDWRAP-----EPIENHLTPRNIQWNYSEPIDICTGLQIRKHYWGSTKTDVREA--EGYIIQEPKHFKRWFTSTDLKQFFDWPVEEITTIWYFAEGGITK---NSFLMKRAKELGIAPLISNTP-----KFNLIGCAFDFLFSKSKALESKLDEMRSQLQFHKGPVIGIHIRTGDDQFDYFSSENIRTWNAKNV------SKFFDCATKVESEFFFNE---------TDGPEKV---RWFLSTDNEQVRTLVQGIYPQKVVT 550
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G04330.1 ID=NO01G04330.1|Name=NO01G04330.1|organism=Nannochloropsis oceanica|type=mRNA|length=1957bp CCACAGGTCCTGTTGTACCTTTCCGCCCATCTGCTTGCTTTTGGTTTTTC CCTTTTGAACCCCCAAGAACACATAAGCAACAACATCAAGAGTCACCATG ACCGTAGGCTACTGCCACCATTATCTTCAGTGGAGGAGAACCCCTGGGCT CCAAGTTTTTGTATTGTCGTTCGTGACCACCATATTAATCCTTGGTGGCC ATATTGCGTCAAAGGGCGGTGGTGTGGGAGCCATACGCGCTCTGCCACAT GCCATATCTGATGCCCGCATTGCGTTCCTCGAGGTAACCTTTGGGGGCAG CAGACCACTACCAAAAGCCGCCTCAGCAGAACCACAACGATCAGATGCCA AACATACAGGGGAAAAGTTTGAGCCGGTTGCGATACTACCCAAAGCGGAG GAAAGGCCAGCAGCAGCATCAGCAGCACCAGTAGCACCAGCACCACTGCT CCTTCATGGAGACTTGTCCCCGTCCCAAAAAGAAATGCCGTCCAACCGAG AAACACGGTGTCTGATCCAAGATTGGGTTATGAAGCACAAACAATTGCAA GACGACATGCTTTCTGGGGAAAAGCCCAAACGCTTTTTGGTCGTGCGACC CGACTGTGGATATTGCGGGATGTGCAATATATTGGATGCCATCACCGGGA CATATTTATTGGCCGTCTTGACAGATCGTGCTTTGGTGATCGATTGGAGA TATCCAGGCAAGCGTGGATGGCAGGAGGGCACCAATTACTTGGATCCTCG GCTTGTGGATTGGAAGGCTCAAAGCGCCGTGGGTGCTGATACGTTTGATT GGTCCGGAAACAAAACCCTGTTGCTGCATGGGTGGAACGATGGGGCGACA ATCAAAGATCTGCTGAAGATTCCTGAGGTATTTAGTGAGACGTTAGATGT TGAGGAGAATGAAGCCATCATTTTGGTGCATATGGGACAGAGTCCCGCGA CGAGCTTGAGAATTAACCCGGAGGCCAAGAAGCGGGCAGTTGCCAAGGGG CTCTTGGCTGAAGACACAGTGTGGGATGAACATTGGGACCAGCAGTTCAA GGGATGTGCGTTGCGTGTATTGTTTCAACCTTCCAAAATATTGAAGGATT TTTATTGTCAAGTGCAGGGGGAGGGGTCGTCGGAAGGGATTGGGGTGCAT GTGAGGACGGGCGATGACCGAACCTGGAATGAAAAGTATGCTTACCCAAC CGACGAGCATTATCGATTCGCGCGCTGTGCAGAGGGGATGCGGCAAGCCA TGTTGGAAGATGACTTTAGAGCAATGGTTGGGGCGGTTGCTTCTGAGGGT GGAAGGAGGGTAAATGTGGAACGGTGGCATGTGGCTTCGGATTACCAGCA GGTGGTCGATGATATCCGGGCGCGGTTTCCCGAGCAGGCTGCGTCAATGG ATACGTTTGAAAGCGAGGAAATGAAACAAGCAGGGGCCATCCGCGTGCAC TATTCCAATACCCCATACCAGCAATTTGCGCTCGGGCCGTTGATGGATCT GATCAAGTTGTCGAGTGGGCTGGCGGTGATTGGTACATGTCGAAGCACTT ATAGTGCCGCTGCGGGCTCTTTTGGGATGCTGCCAAATGAGCTAACGCTG TTGAAACGCACCAATTTTGAGATGAGGTACTTTCACTCGACTGCGTGTCC GGAGATGCCGAAAGAGGATGAGGCGGAGGGGATGTGCCGCGAGCTCTTGG AGTCAAACAGGAAGTTAGTCGAAGAGGTGTTGAGGACACCGCCATTCATC ACTTGTCCTTTATTTGGTGAAAGTGGTGACGCTGATGATGGCGGTGGTGG TGGTAAATATGATGATCTGAGGAGTAGGATAAATAGATGAATGGTGGGCC TGCTATTGACTGTGGCTACTGTTGCCATGCTTCATATGCGTCGGCGTCAA AATGATAGCATGGGTGGGTAGAAGCAGGGCACAAGAGCTAAAAAGATAAT GTTTATA back to topprotein sequence of NO01G04330.1 >NO01G04330.1-protein ID=NO01G04330.1-protein|Name=NO01G04330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=581bp MTVGYCHHYLQWRRTPGLQVFVLSFVTTILILGGHIASKGGGVGAIRALP HAISDARIAFLEVTFGGSRPLPKAASAEPQRSDAKHTGEKFEPVAILPKA EERPAAASAAPVAPAPLLLHGDLSPSQKEMPSNRETRCLIQDWVMKHKQL QDDMLSGEKPKRFLVVRPDCGYCGMCNILDAITGTYLLAVLTDRALVIDW RYPGKRGWQEGTNYLDPRLVDWKAQSAVGADTFDWSGNKTLLLHGWNDGA TIKDLLKIPEVFSETLDVEENEAIILVHMGQSPATSLRINPEAKKRAVAK GLLAEDTVWDEHWDQQFKGCALRVLFQPSKILKDFYCQVQGEGSSEGIGV HVRTGDDRTWNEKYAYPTDEHYRFARCAEGMRQAMLEDDFRAMVGAVASE GGRRVNVERWHVASDYQQVVDDIRARFPEQAASMDTFESEEMKQAGAIRV HYSNTPYQQFALGPLMDLIKLSSGLAVIGTCRSTYSAAAGSFGMLPNELT LLKRTNFEMRYFHSTACPEMPKEDEAEGMCRELLESNRKLVEEVLRTPPF ITCPLFGESGDADDGGGGGKYDDLRSRINR* back to topmRNA from alignment at chr1:1156961..1158917- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G04330.1 ID=NO01G04330.1|Name=NO01G04330.1|organism=Nannochloropsis oceanica|type=mRNA|length=1957bp|location=Sequence derived from alignment at chr1:1156961..1158917- (Nannochloropsis oceanica) CCACAGGTCCTGTTGTACCTTTCCGCCCATCTGCTTGCTTTTGGTTTTTC
CCTTTTGAACCCCCAAGAACACATAAGCAACAACATCAAGAGTCACCATG
ACCGTAGGCTACTGCCACCATTATCTTCAGTGGAGGAGAACCCCTGGGCT
CCAAGTTTTTGTATTGTCGTTCGTGACCACCATATTAATCCTTGGTGGCC
ATATTGCGTCAAAGGGCGGTGGTGTGGGAGCCATACGCGCTCTGCCACAT
GCCATATCTGATGCCCGCATTGCGTTCCTCGAGGTAACCTTTGGGGGCAG
CAGACCACTACCAAAAGCCGCCTCAGCAGAACCACAACGATCAGATGCCA
AACATACAGGGGAAAAGTTTGAGCCGGTTGCGATACTACCCAAAGCGGAG
GAAAGGCCAGCAGCAGCATCAGCAGCACCAGTAGCACCAGCACCACTGCT
CCTTCATGGAGACTTGTCCCCGTCCCAAAAAGAAATGCCGTCCAACCGAG
AAACACGGTGTCTGATCCAAGATTGGGTTATGAAGCACAAACAATTGCAA
GACGACATGCTTTCTGGGGAAAAGCCCAAACGCTTTTTGGTCGTGCGACC
CGACTGTGGATATTGCGGGATGTGCAATATATTGGATGCCATCACCGGGA
CATATTTATTGGCCGTCTTGACAGATCGTGCTTTGGTGATCGATTGGAGA
TATCCAGGCAAGCGTGGATGGCAGGAGGGCACCAATTACTTGGATCCTCG
GCTTGTGGATTGGAAGGCTCAAAGCGCCGTGGGTGCTGATACGTTTGATT
GGTCCGGAAACAAAACCCTGTTGCTGCATGGGTGGAACGATGGGGCGACA
ATCAAAGATCTGCTGAAGATTCCTGAGGTATTTAGTGAGACGTTAGATGT
TGAGGAGAATGAAGCCATCATTTTGGTGCATATGGGACAGAGTCCCGCGA
CGAGCTTGAGAATTAACCCGGAGGCCAAGAAGCGGGCAGTTGCCAAGGGG
CTCTTGGCTGAAGACACAGTGTGGGATGAACATTGGGACCAGCAGTTCAA
GGGATGTGCGTTGCGTGTATTGTTTCAACCTTCCAAAATATTGAAGGATT
TTTATTGTCAAGTGCAGGGGGAGGGGTCGTCGGAAGGGATTGGGGTGCAT
GTGAGGACGGGCGATGACCGAACCTGGAATGAAAAGTATGCTTACCCAAC
CGACGAGCATTATCGATTCGCGCGCTGTGCAGAGGGGATGCGGCAAGCCA
TGTTGGAAGATGACTTTAGAGCAATGGTTGGGGCGGTTGCTTCTGAGGGT
GGAAGGAGGGTAAATGTGGAACGGTGGCATGTGGCTTCGGATTACCAGCA
GGTGGTCGATGATATCCGGGCGCGGTTTCCCGAGCAGGCTGCGTCAATGG
ATACGTTTGAAAGCGAGGAAATGAAACAAGCAGGGGCCATCCGCGTGCAC
TATTCCAATACCCCATACCAGCAATTTGCGCTCGGGCCGTTGATGGATCT
GATCAAGTTGTCGAGTGGGCTGGCGGTGATTGGTACATGTCGAAGCACTT
ATAGTGCCGCTGCGGGCTCTTTTGGGATGCTGCCAAATGAGCTAACGCTG
TTGAAACGCACCAATTTTGAGATGAGGTACTTTCACTCGACTGCGTGTCC
GGAGATGCCGAAAGAGGATGAGGCGGAGGGGATGTGCCGCGAGCTCTTGG
AGTCAAACAGGAAGTTAGTCGAAGAGGTGTTGAGGACACCGCCATTCATC
ACTTGTCCTTTATTTGGTGAAAGTGGTGACGCTGATGATGGCGGTGGTGG
TGGTAAATATGATGATCTGAGGAGTAGGATAAATAGATGAATGGTGGGCC
TGCTATTGACTGTGGCTACTGTTGCCATGCTTCATATGCGTCGGCGTCAA
AATGATAGCATGGGTGGGTAGAAGCAGGGCACAAGAGCTAAAAAGATAAT
GTTTATA back to topCoding sequence (CDS) from alignment at chr1:1156961..1158917- >NO01G04330.1 ID=NO01G04330.1|Name=NO01G04330.1|organism=Nannochloropsis oceanica|type=CDS|length=1743bp|location=Sequence derived from alignment at chr1:1156961..1158917- (Nannochloropsis oceanica) ATGACCGTAGGCTACTGCCACCATTATCTTCAGTGGAGGAGAACCCCTGG GCTCCAAGTTTTTGTATTGTCGTTCGTGACCACCATATTAATCCTTGGTG GCCATATTGCGTCAAAGGGCGGTGGTGTGGGAGCCATACGCGCTCTGCCA CATGCCATATCTGATGCCCGCATTGCGTTCCTCGAGGTAACCTTTGGGGG CAGCAGACCACTACCAAAAGCCGCCTCAGCAGAACCACAACGATCAGATG CCAAACATACAGGGGAAAAGTTTGAGCCGGTTGCGATACTACCCAAAGCG GAGGAAAGGCCAGCAGCAGCATCAGCAGCACCAGTAGCACCAGCACCACT GCTCCTTCATGGAGACTTGTCCCCGTCCCAAAAAGAAATGCCGTCCAACC GAGAAACACGGTGTCTGATCCAAGATTGGGTTATGAAGCACAAACAATTG CAAGACGACATGCTTTCTGGGGAAAAGCCCAAACGCTTTTTGGTCGTGCG ACCCGACTGTGGATATTGCGGGATGTGCAATATATTGGATGCCATCACCG GGACATATTTATTGGCCGTCTTGACAGATCGTGCTTTGGTGATCGATTGG AGATATCCAGGCAAGCGTGGATGGCAGGAGGGCACCAATTACTTGGATCC TCGGCTTGTGGATTGGAAGGCTCAAAGCGCCGTGGGTGCTGATACGTTTG ATTGGTCCGGAAACAAAACCCTGTTGCTGCATGGGTGGAACGATGGGGCG ACAATCAAAGATCTGCTGAAGATTCCTGAGGTATTTAGTGAGACGTTAGA TGTTGAGGAGAATGAAGCCATCATTTTGGTGCATATGGGACAGAGTCCCG CGACGAGCTTGAGAATTAACCCGGAGGCCAAGAAGCGGGCAGTTGCCAAG GGGCTCTTGGCTGAAGACACAGTGTGGGATGAACATTGGGACCAGCAGTT CAAGGGATGTGCGTTGCGTGTATTGTTTCAACCTTCCAAAATATTGAAGG ATTTTTATTGTCAAGTGCAGGGGGAGGGGTCGTCGGAAGGGATTGGGGTG CATGTGAGGACGGGCGATGACCGAACCTGGAATGAAAAGTATGCTTACCC AACCGACGAGCATTATCGATTCGCGCGCTGTGCAGAGGGGATGCGGCAAG CCATGTTGGAAGATGACTTTAGAGCAATGGTTGGGGCGGTTGCTTCTGAG GGTGGAAGGAGGGTAAATGTGGAACGGTGGCATGTGGCTTCGGATTACCA GCAGGTGGTCGATGATATCCGGGCGCGGTTTCCCGAGCAGGCTGCGTCAA TGGATACGTTTGAAAGCGAGGAAATGAAACAAGCAGGGGCCATCCGCGTG CACTATTCCAATACCCCATACCAGCAATTTGCGCTCGGGCCGTTGATGGA TCTGATCAAGTTGTCGAGTGGGCTGGCGGTGATTGGTACATGTCGAAGCA CTTATAGTGCCGCTGCGGGCTCTTTTGGGATGCTGCCAAATGAGCTAACG CTGTTGAAACGCACCAATTTTGAGATGAGGTACTTTCACTCGACTGCGTG TCCGGAGATGCCGAAAGAGGATGAGGCGGAGGGGATGTGCCGCGAGCTCT TGGAGTCAAACAGGAAGTTAGTCGAAGAGGTGTTGAGGACACCGCCATTC ATCACTTGTCCTTTATTTGGTGAAAGTGGTGACGCTGATGATGGCGGTGG TGGTGGTAAATATGATGATCTGAGGAGTAGGATAAATAGATGA back to top
|