NO01G04300.1, NO01G04300.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G04300.1
Unique NameNO01G04300.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1470
Alignment locationchr1:1150702..1152171 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1150702..1152171 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO01G04300.1 vs.
Match: EWM29381.1 (Alpha-mannosyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 616.3 bits (1588), Expect = 8.100e-173
Identity = 314/476 (65.97%), Postives = 359/476 (75.42%), Query Frame = 0
Query:   17 FSFKWLARGVVLVIILDLLLQVRFFFPGHSL----RGGAACTSYDPVATPHILHLLHTTFNTTPSISTATPEALFEGQGVVMAASGAISRQAAGAYVTAFVLRHVLHETLPIEIFYSGPEEAFHGPVLEALKTLSNVHLIDLEQALTDLHSRGLMSLEPLPPLRVLKGYAAKVYAMQACSFQEALLFDAGVIPFASSSLFFSLPSYKRQGLAVFSDYVSIDQGLWKPFLRDMCLDLNHVFRSLGGRELDSSCVVMDKLKNADALSVAVALNGPLQRTTYVSLLGDKDTWALGMFFVGKTVSVHEVEPGYLLVAR-----------EEGREEGPRH-----------ARKVNGHLQFLRNKSVQEPPGLVPLHHNNQLLDLREFPLIGNRIYMDVFSKLGDVLMPGTRRRDCRGFGVEGLLPLSSVMREAYGEIARDLKEKGINHCVCRDDWMSCEADIERLRKKHWVLRVIDYWAP 467
            FS KW+ RGV  +II+++ LQ  FF PG  L    R  A CT +DPVA P  LHLL + FN TP+   ATP+ALF G+G+V+AASGAI+RQAAGAYVTA VLR VLHE LPIEIFYSGPEEAF GPVL+AL+ L +V L+DLE AL++LH+RGL +LEPLP L+ L+GYAAK YAMQACSFQEALLFDAG IPF  +S FF LPSY R GLAVFSDYVSID   W+  L+ MCLD+  V R+L GRELDSSCVVMDK +NADAL+V++ALNGP Q  TY +L GDKDTWAL MF+VGKTVSV E EPGYLL AR           E G EEG R            ARKVNGH+QFL++KS Q PPGLVPLHHNNQLLDLR +    N IYMDVFS LGDVLMPGTRRRDCR F    LLPLS VM EAY  +A  L+E  I+HCVCRDDW+SCEADI RLR K+WVLR+ID+WAP
Sbjct:   13 FSLKWVIRGVAGLIIINIFLQTGFFLPGPILSSTGRHDAVCTPFDPVAAPFSLHLLGSAFNFTPATPMATPDALFHGKGIVIAASGAIARQAAGAYVTALVLRTVLHEDLPIEIFYSGPEEAFQGPVLKALEALPDVRLLDLESALSNLHARGLRTLEPLPSLQALRGYAAKAYAMQACSFQEALLFDAGAIPFVPASRFFGLPSYHRHGLAVFSDYVSIDAAQWRYILQGMCLDVRQVARALNGRELDSSCVVMDKRRNADALAVSLALNGPCQALTYATLWGDKDTWALAMFYVGKTVSVRECEPGYLLKARPSGEGGGEGGGEGGAEEGARGNTDTLSSPLQVARKVNGHVQFLKDKSSQSPPGLVPLHHNNQLLDLRNYHRHKNGIYMDVFSHLGDVLMPGTRRRDCRAFPARDLLPLSPVMHEAYEAVALGLEENKIDHCVCRDDWISCEADIARLRHKYWVLRLIDWWAP 488          
The following BLAST results are available for this feature:
BLAST of NO01G04300.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29381.18.100e-17365.97Alpha-mannosyltransferase [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G04300NO01G04300Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G04300.1NO01G04300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G04300.1.cds1NO01G04300.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G04300.1 ID=NO01G04300.1|Name=NO01G04300.1|organism=Nannochloropsis oceanica|type=mRNA|length=1470bp
ATGATCCCCTCAAGCAGCCACAACCGTACCAGCTATGGCAGCGGCAGATT
TTCCTTCAAATGGCTGGCACGGGGCGTGGTTCTTGTCATAATCCTAGACC
TCCTCTTACAGGTTCGCTTCTTCTTCCCCGGTCATTCCCTCCGCGGAGGC
GCAGCGTGCACATCATACGACCCTGTAGCGACCCCACACATTCTCCATTT
ATTGCACACCACTTTCAACACCACGCCGTCCATCTCCACCGCCACCCCGG
AAGCGCTCTTCGAGGGCCAAGGCGTGGTCATGGCGGCCTCAGGCGCCATC
AGCCGTCAAGCCGCCGGGGCCTACGTCACAGCCTTTGTCCTCCGCCACGT
CCTCCACGAAACTCTGCCCATCGAAATATTTTACTCTGGACCCGAAGAAG
CCTTCCATGGCCCCGTTCTCGAAGCGCTAAAAACTCTCTCAAATGTCCAC
CTGATTGACCTCGAACAAGCCTTGACAGACCTCCACTCTCGCGGCCTCAT
GTCCCTCGAGCCTCTCCCCCCACTGCGTGTTCTCAAAGGATACGCAGCCA
AAGTCTACGCGATGCAGGCCTGCTCCTTCCAAGAAGCTCTCTTGTTCGAT
GCGGGTGTGATCCCGTTTGCGTCCTCCTCGCTGTTTTTCTCCCTCCCTTC
TTACAAGCGACAAGGTCTTGCTGTGTTTAGTGATTATGTAAGCATCGACC
AAGGATTGTGGAAACCCTTCCTGCGGGACATGTGCCTTGACCTTAACCAC
GTCTTCCGTTCATTGGGAGGACGTGAATTGGACAGTTCGTGTGTAGTGAT
GGATAAACTCAAAAACGCCGATGCCCTCAGTGTGGCTGTTGCTCTGAATG
GGCCCTTGCAGCGCACTACCTACGTCTCTCTTCTGGGCGATAAGGATACC
TGGGCGCTGGGCATGTTCTTCGTCGGGAAGACGGTGTCTGTGCACGAGGT
AGAACCTGGTTATCTACTGGTAGCTCGCGAGGAAGGGAGGGAAGAAGGGC
CACGACATGCGCGGAAGGTGAATGGTCATTTGCAGTTTTTGAGGAATAAG
TCGGTGCAGGAACCCCCTGGGCTCGTGCCTTTGCACCACAACAACCAATT
GCTGGATTTGCGAGAATTTCCGTTGATTGGAAATAGGATCTATATGGATG
TTTTCTCTAAGTTGGGGGATGTGCTGATGCCGGGGACGAGGAGGAGAGAT
TGTAGAGGGTTTGGAGTGGAGGGACTTTTGCCACTGTCGAGTGTGATGAG
AGAGGCGTACGGTGAGATTGCGCGGGACTTAAAGGAGAAGGGGATTAATC
ATTGCGTATGTCGGGATGATTGGATGTCGTGCGAGGCGGATATTGAAAGG
TTAAGGAAGAAGCATTGGGTGTTGCGGGTCATTGATTACTGGGCTCCAAC
ACGATGGAAAGAGGCAAGGATGAAGGAGGCACGGGCACGACAAGCAAAAG
ACGCGGCAGCAGCACCCTGA
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protein sequence of NO01G04300.1

>NO01G04300.1-protein ID=NO01G04300.1-protein|Name=NO01G04300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=490bp
MIPSSSHNRTSYGSGRFSFKWLARGVVLVIILDLLLQVRFFFPGHSLRGG
AACTSYDPVATPHILHLLHTTFNTTPSISTATPEALFEGQGVVMAASGAI
SRQAAGAYVTAFVLRHVLHETLPIEIFYSGPEEAFHGPVLEALKTLSNVH
LIDLEQALTDLHSRGLMSLEPLPPLRVLKGYAAKVYAMQACSFQEALLFD
AGVIPFASSSLFFSLPSYKRQGLAVFSDYVSIDQGLWKPFLRDMCLDLNH
VFRSLGGRELDSSCVVMDKLKNADALSVAVALNGPLQRTTYVSLLGDKDT
WALGMFFVGKTVSVHEVEPGYLLVAREEGREEGPRHARKVNGHLQFLRNK
SVQEPPGLVPLHHNNQLLDLREFPLIGNRIYMDVFSKLGDVLMPGTRRRD
CRGFGVEGLLPLSSVMREAYGEIARDLKEKGINHCVCRDDWMSCEADIER
LRKKHWVLRVIDYWAPTRWKEARMKEARARQAKDAAAAP*
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mRNA from alignment at chr1:1150702..1152171-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G04300.1 ID=NO01G04300.1|Name=NO01G04300.1|organism=Nannochloropsis oceanica|type=mRNA|length=1470bp|location=Sequence derived from alignment at chr1:1150702..1152171- (Nannochloropsis oceanica)
ATGATCCCCTCAAGCAGCCACAACCGTACCAGCTATGGCAGCGGCAGATT TTCCTTCAAATGGCTGGCACGGGGCGTGGTTCTTGTCATAATCCTAGACC TCCTCTTACAGGTTCGCTTCTTCTTCCCCGGTCATTCCCTCCGCGGAGGC GCAGCGTGCACATCATACGACCCTGTAGCGACCCCACACATTCTCCATTT ATTGCACACCACTTTCAACACCACGCCGTCCATCTCCACCGCCACCCCGG AAGCGCTCTTCGAGGGCCAAGGCGTGGTCATGGCGGCCTCAGGCGCCATC AGCCGTCAAGCCGCCGGGGCCTACGTCACAGCCTTTGTCCTCCGCCACGT CCTCCACGAAACTCTGCCCATCGAAATATTTTACTCTGGACCCGAAGAAG CCTTCCATGGCCCCGTTCTCGAAGCGCTAAAAACTCTCTCAAATGTCCAC CTGATTGACCTCGAACAAGCCTTGACAGACCTCCACTCTCGCGGCCTCAT GTCCCTCGAGCCTCTCCCCCCACTGCGTGTTCTCAAAGGATACGCAGCCA AAGTCTACGCGATGCAGGCCTGCTCCTTCCAAGAAGCTCTCTTGTTCGAT GCGGGTGTGATCCCGTTTGCGTCCTCCTCGCTGTTTTTCTCCCTCCCTTC TTACAAGCGACAAGGTCTTGCTGTGTTTAGTGATTATGTAAGCATCGACC AAGGATTGTGGAAACCCTTCCTGCGGGACATGTGCCTTGACCTTAACCAC GTCTTCCGTTCATTGGGAGGACGTGAATTGGACAGTTCGTGTGTAGTGAT GGATAAACTCAAAAACGCCGATGCCCTCAGTGTGGCTGTTGCTCTGAATG GGCCCTTGCAGCGCACTACCTACGTCTCTCTTCTGGGCGATAAGGATACC TGGGCGCTGGGCATGTTCTTCGTCGGGAAGACGGTGTCTGTGCACGAGGT AGAACCTGGTTATCTACTGGTAGCTCGCGAGGAAGGGAGGGAAGAAGGGC CACGACATGCGCGGAAGGTGAATGGTCATTTGCAGTTTTTGAGGAATAAG TCGGTGCAGGAACCCCCTGGGCTCGTGCCTTTGCACCACAACAACCAATT GCTGGATTTGCGAGAATTTCCGTTGATTGGAAATAGGATCTATATGGATG TTTTCTCTAAGTTGGGGGATGTGCTGATGCCGGGGACGAGGAGGAGAGAT TGTAGAGGGTTTGGAGTGGAGGGACTTTTGCCACTGTCGAGTGTGATGAG AGAGGCGTACGGTGAGATTGCGCGGGACTTAAAGGAGAAGGGGATTAATC ATTGCGTATGTCGGGATGATTGGATGTCGTGCGAGGCGGATATTGAAAGG TTAAGGAAGAAGCATTGGGTGTTGCGGGTCATTGATTACTGGGCTCCAAC ACGATGGAAAGAGGCAAGGATGAAGGAGGCACGGGCACGACAAGCAAAAG ACGCGGCAGCAGCACCCTGA
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Coding sequence (CDS) from alignment at chr1:1150702..1152171-

>NO01G04300.1 ID=NO01G04300.1|Name=NO01G04300.1|organism=Nannochloropsis oceanica|type=CDS|length=1470bp|location=Sequence derived from alignment at chr1:1150702..1152171- (Nannochloropsis oceanica)
ATGATCCCCTCAAGCAGCCACAACCGTACCAGCTATGGCAGCGGCAGATT
TTCCTTCAAATGGCTGGCACGGGGCGTGGTTCTTGTCATAATCCTAGACC
TCCTCTTACAGGTTCGCTTCTTCTTCCCCGGTCATTCCCTCCGCGGAGGC
GCAGCGTGCACATCATACGACCCTGTAGCGACCCCACACATTCTCCATTT
ATTGCACACCACTTTCAACACCACGCCGTCCATCTCCACCGCCACCCCGG
AAGCGCTCTTCGAGGGCCAAGGCGTGGTCATGGCGGCCTCAGGCGCCATC
AGCCGTCAAGCCGCCGGGGCCTACGTCACAGCCTTTGTCCTCCGCCACGT
CCTCCACGAAACTCTGCCCATCGAAATATTTTACTCTGGACCCGAAGAAG
CCTTCCATGGCCCCGTTCTCGAAGCGCTAAAAACTCTCTCAAATGTCCAC
CTGATTGACCTCGAACAAGCCTTGACAGACCTCCACTCTCGCGGCCTCAT
GTCCCTCGAGCCTCTCCCCCCACTGCGTGTTCTCAAAGGATACGCAGCCA
AAGTCTACGCGATGCAGGCCTGCTCCTTCCAAGAAGCTCTCTTGTTCGAT
GCGGGTGTGATCCCGTTTGCGTCCTCCTCGCTGTTTTTCTCCCTCCCTTC
TTACAAGCGACAAGGTCTTGCTGTGTTTAGTGATTATGTAAGCATCGACC
AAGGATTGTGGAAACCCTTCCTGCGGGACATGTGCCTTGACCTTAACCAC
GTCTTCCGTTCATTGGGAGGACGTGAATTGGACAGTTCGTGTGTAGTGAT
GGATAAACTCAAAAACGCCGATGCCCTCAGTGTGGCTGTTGCTCTGAATG
GGCCCTTGCAGCGCACTACCTACGTCTCTCTTCTGGGCGATAAGGATACC
TGGGCGCTGGGCATGTTCTTCGTCGGGAAGACGGTGTCTGTGCACGAGGT
AGAACCTGGTTATCTACTGGTAGCTCGCGAGGAAGGGAGGGAAGAAGGGC
CACGACATGCGCGGAAGGTGAATGGTCATTTGCAGTTTTTGAGGAATAAG
TCGGTGCAGGAACCCCCTGGGCTCGTGCCTTTGCACCACAACAACCAATT
GCTGGATTTGCGAGAATTTCCGTTGATTGGAAATAGGATCTATATGGATG
TTTTCTCTAAGTTGGGGGATGTGCTGATGCCGGGGACGAGGAGGAGAGAT
TGTAGAGGGTTTGGAGTGGAGGGACTTTTGCCACTGTCGAGTGTGATGAG
AGAGGCGTACGGTGAGATTGCGCGGGACTTAAAGGAGAAGGGGATTAATC
ATTGCGTATGTCGGGATGATTGGATGTCGTGCGAGGCGGATATTGAAAGG
TTAAGGAAGAAGCATTGGGTGTTGCGGGTCATTGATTACTGGGCTCCAAC
ACGATGGAAAGAGGCAAGGATGAAGGAGGCACGGGCACGACAAGCAAAAG
ACGCGGCAGCAGCACCCTGA
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Synonyms
Publications