|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:1150702..1152171 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G04300.1 vs.
Match: EWM29381.1 (Alpha-mannosyltransferase [Nannochloropsis gaditana]) HSP 1 Score: 616.3 bits (1588), Expect = 8.100e-173 Identity = 314/476 (65.97%), Postives = 359/476 (75.42%), Query Frame = 0
Query: 17 FSFKWLARGVVLVIILDLLLQVRFFFPGHSL----RGGAACTSYDPVATPHILHLLHTTFNTTPSISTATPEALFEGQGVVMAASGAISRQAAGAYVTAFVLRHVLHETLPIEIFYSGPEEAFHGPVLEALKTLSNVHLIDLEQALTDLHSRGLMSLEPLPPLRVLKGYAAKVYAMQACSFQEALLFDAGVIPFASSSLFFSLPSYKRQGLAVFSDYVSIDQGLWKPFLRDMCLDLNHVFRSLGGRELDSSCVVMDKLKNADALSVAVALNGPLQRTTYVSLLGDKDTWALGMFFVGKTVSVHEVEPGYLLVAR-----------EEGREEGPRH-----------ARKVNGHLQFLRNKSVQEPPGLVPLHHNNQLLDLREFPLIGNRIYMDVFSKLGDVLMPGTRRRDCRGFGVEGLLPLSSVMREAYGEIARDLKEKGINHCVCRDDWMSCEADIERLRKKHWVLRVIDYWAP 467
FS KW+ RGV +II+++ LQ FF PG L R A CT +DPVA P LHLL + FN TP+ ATP+ALF G+G+V+AASGAI+RQAAGAYVTA VLR VLHE LPIEIFYSGPEEAF GPVL+AL+ L +V L+DLE AL++LH+RGL +LEPLP L+ L+GYAAK YAMQACSFQEALLFDAG IPF +S FF LPSY R GLAVFSDYVSID W+ L+ MCLD+ V R+L GRELDSSCVVMDK +NADAL+V++ALNGP Q TY +L GDKDTWAL MF+VGKTVSV E EPGYLL AR E G EEG R ARKVNGH+QFL++KS Q PPGLVPLHHNNQLLDLR + N IYMDVFS LGDVLMPGTRRRDCR F LLPLS VM EAY +A L+E I+HCVCRDDW+SCEADI RLR K+WVLR+ID+WAP
Sbjct: 13 FSLKWVIRGVAGLIIINIFLQTGFFLPGPILSSTGRHDAVCTPFDPVAAPFSLHLLGSAFNFTPATPMATPDALFHGKGIVIAASGAIARQAAGAYVTALVLRTVLHEDLPIEIFYSGPEEAFQGPVLKALEALPDVRLLDLESALSNLHARGLRTLEPLPSLQALRGYAAKAYAMQACSFQEALLFDAGAIPFVPASRFFGLPSYHRHGLAVFSDYVSIDAAQWRYILQGMCLDVRQVARALNGRELDSSCVVMDKRRNADALAVSLALNGPCQALTYATLWGDKDTWALAMFYVGKTVSVRECEPGYLLKARPSGEGGGEGGGEGGAEEGARGNTDTLSSPLQVARKVNGHVQFLKDKSSQSPPGLVPLHHNNQLLDLRNYHRHKNGIYMDVFSHLGDVLMPGTRRRDCRAFPARDLLPLSPVMHEAYEAVALGLEENKIDHCVCRDDWISCEADIARLRHKYWVLRLIDWWAP 488
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G04300.1 ID=NO01G04300.1|Name=NO01G04300.1|organism=Nannochloropsis oceanica|type=mRNA|length=1470bp ATGATCCCCTCAAGCAGCCACAACCGTACCAGCTATGGCAGCGGCAGATT TTCCTTCAAATGGCTGGCACGGGGCGTGGTTCTTGTCATAATCCTAGACC TCCTCTTACAGGTTCGCTTCTTCTTCCCCGGTCATTCCCTCCGCGGAGGC GCAGCGTGCACATCATACGACCCTGTAGCGACCCCACACATTCTCCATTT ATTGCACACCACTTTCAACACCACGCCGTCCATCTCCACCGCCACCCCGG AAGCGCTCTTCGAGGGCCAAGGCGTGGTCATGGCGGCCTCAGGCGCCATC AGCCGTCAAGCCGCCGGGGCCTACGTCACAGCCTTTGTCCTCCGCCACGT CCTCCACGAAACTCTGCCCATCGAAATATTTTACTCTGGACCCGAAGAAG CCTTCCATGGCCCCGTTCTCGAAGCGCTAAAAACTCTCTCAAATGTCCAC CTGATTGACCTCGAACAAGCCTTGACAGACCTCCACTCTCGCGGCCTCAT GTCCCTCGAGCCTCTCCCCCCACTGCGTGTTCTCAAAGGATACGCAGCCA AAGTCTACGCGATGCAGGCCTGCTCCTTCCAAGAAGCTCTCTTGTTCGAT GCGGGTGTGATCCCGTTTGCGTCCTCCTCGCTGTTTTTCTCCCTCCCTTC TTACAAGCGACAAGGTCTTGCTGTGTTTAGTGATTATGTAAGCATCGACC AAGGATTGTGGAAACCCTTCCTGCGGGACATGTGCCTTGACCTTAACCAC GTCTTCCGTTCATTGGGAGGACGTGAATTGGACAGTTCGTGTGTAGTGAT GGATAAACTCAAAAACGCCGATGCCCTCAGTGTGGCTGTTGCTCTGAATG GGCCCTTGCAGCGCACTACCTACGTCTCTCTTCTGGGCGATAAGGATACC TGGGCGCTGGGCATGTTCTTCGTCGGGAAGACGGTGTCTGTGCACGAGGT AGAACCTGGTTATCTACTGGTAGCTCGCGAGGAAGGGAGGGAAGAAGGGC CACGACATGCGCGGAAGGTGAATGGTCATTTGCAGTTTTTGAGGAATAAG TCGGTGCAGGAACCCCCTGGGCTCGTGCCTTTGCACCACAACAACCAATT GCTGGATTTGCGAGAATTTCCGTTGATTGGAAATAGGATCTATATGGATG TTTTCTCTAAGTTGGGGGATGTGCTGATGCCGGGGACGAGGAGGAGAGAT TGTAGAGGGTTTGGAGTGGAGGGACTTTTGCCACTGTCGAGTGTGATGAG AGAGGCGTACGGTGAGATTGCGCGGGACTTAAAGGAGAAGGGGATTAATC ATTGCGTATGTCGGGATGATTGGATGTCGTGCGAGGCGGATATTGAAAGG TTAAGGAAGAAGCATTGGGTGTTGCGGGTCATTGATTACTGGGCTCCAAC ACGATGGAAAGAGGCAAGGATGAAGGAGGCACGGGCACGACAAGCAAAAG ACGCGGCAGCAGCACCCTGA back to topprotein sequence of NO01G04300.1 >NO01G04300.1-protein ID=NO01G04300.1-protein|Name=NO01G04300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=490bp MIPSSSHNRTSYGSGRFSFKWLARGVVLVIILDLLLQVRFFFPGHSLRGG AACTSYDPVATPHILHLLHTTFNTTPSISTATPEALFEGQGVVMAASGAI SRQAAGAYVTAFVLRHVLHETLPIEIFYSGPEEAFHGPVLEALKTLSNVH LIDLEQALTDLHSRGLMSLEPLPPLRVLKGYAAKVYAMQACSFQEALLFD AGVIPFASSSLFFSLPSYKRQGLAVFSDYVSIDQGLWKPFLRDMCLDLNH VFRSLGGRELDSSCVVMDKLKNADALSVAVALNGPLQRTTYVSLLGDKDT WALGMFFVGKTVSVHEVEPGYLLVAREEGREEGPRHARKVNGHLQFLRNK SVQEPPGLVPLHHNNQLLDLREFPLIGNRIYMDVFSKLGDVLMPGTRRRD CRGFGVEGLLPLSSVMREAYGEIARDLKEKGINHCVCRDDWMSCEADIER LRKKHWVLRVIDYWAPTRWKEARMKEARARQAKDAAAAP* back to topmRNA from alignment at chr1:1150702..1152171- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G04300.1 ID=NO01G04300.1|Name=NO01G04300.1|organism=Nannochloropsis oceanica|type=mRNA|length=1470bp|location=Sequence derived from alignment at chr1:1150702..1152171- (Nannochloropsis oceanica) ATGATCCCCTCAAGCAGCCACAACCGTACCAGCTATGGCAGCGGCAGATT
TTCCTTCAAATGGCTGGCACGGGGCGTGGTTCTTGTCATAATCCTAGACC
TCCTCTTACAGGTTCGCTTCTTCTTCCCCGGTCATTCCCTCCGCGGAGGC
GCAGCGTGCACATCATACGACCCTGTAGCGACCCCACACATTCTCCATTT
ATTGCACACCACTTTCAACACCACGCCGTCCATCTCCACCGCCACCCCGG
AAGCGCTCTTCGAGGGCCAAGGCGTGGTCATGGCGGCCTCAGGCGCCATC
AGCCGTCAAGCCGCCGGGGCCTACGTCACAGCCTTTGTCCTCCGCCACGT
CCTCCACGAAACTCTGCCCATCGAAATATTTTACTCTGGACCCGAAGAAG
CCTTCCATGGCCCCGTTCTCGAAGCGCTAAAAACTCTCTCAAATGTCCAC
CTGATTGACCTCGAACAAGCCTTGACAGACCTCCACTCTCGCGGCCTCAT
GTCCCTCGAGCCTCTCCCCCCACTGCGTGTTCTCAAAGGATACGCAGCCA
AAGTCTACGCGATGCAGGCCTGCTCCTTCCAAGAAGCTCTCTTGTTCGAT
GCGGGTGTGATCCCGTTTGCGTCCTCCTCGCTGTTTTTCTCCCTCCCTTC
TTACAAGCGACAAGGTCTTGCTGTGTTTAGTGATTATGTAAGCATCGACC
AAGGATTGTGGAAACCCTTCCTGCGGGACATGTGCCTTGACCTTAACCAC
GTCTTCCGTTCATTGGGAGGACGTGAATTGGACAGTTCGTGTGTAGTGAT
GGATAAACTCAAAAACGCCGATGCCCTCAGTGTGGCTGTTGCTCTGAATG
GGCCCTTGCAGCGCACTACCTACGTCTCTCTTCTGGGCGATAAGGATACC
TGGGCGCTGGGCATGTTCTTCGTCGGGAAGACGGTGTCTGTGCACGAGGT
AGAACCTGGTTATCTACTGGTAGCTCGCGAGGAAGGGAGGGAAGAAGGGC
CACGACATGCGCGGAAGGTGAATGGTCATTTGCAGTTTTTGAGGAATAAG
TCGGTGCAGGAACCCCCTGGGCTCGTGCCTTTGCACCACAACAACCAATT
GCTGGATTTGCGAGAATTTCCGTTGATTGGAAATAGGATCTATATGGATG
TTTTCTCTAAGTTGGGGGATGTGCTGATGCCGGGGACGAGGAGGAGAGAT
TGTAGAGGGTTTGGAGTGGAGGGACTTTTGCCACTGTCGAGTGTGATGAG
AGAGGCGTACGGTGAGATTGCGCGGGACTTAAAGGAGAAGGGGATTAATC
ATTGCGTATGTCGGGATGATTGGATGTCGTGCGAGGCGGATATTGAAAGG
TTAAGGAAGAAGCATTGGGTGTTGCGGGTCATTGATTACTGGGCTCCAAC
ACGATGGAAAGAGGCAAGGATGAAGGAGGCACGGGCACGACAAGCAAAAG
ACGCGGCAGCAGCACCCTGA back to topCoding sequence (CDS) from alignment at chr1:1150702..1152171- >NO01G04300.1 ID=NO01G04300.1|Name=NO01G04300.1|organism=Nannochloropsis oceanica|type=CDS|length=1470bp|location=Sequence derived from alignment at chr1:1150702..1152171- (Nannochloropsis oceanica) ATGATCCCCTCAAGCAGCCACAACCGTACCAGCTATGGCAGCGGCAGATT TTCCTTCAAATGGCTGGCACGGGGCGTGGTTCTTGTCATAATCCTAGACC TCCTCTTACAGGTTCGCTTCTTCTTCCCCGGTCATTCCCTCCGCGGAGGC GCAGCGTGCACATCATACGACCCTGTAGCGACCCCACACATTCTCCATTT ATTGCACACCACTTTCAACACCACGCCGTCCATCTCCACCGCCACCCCGG AAGCGCTCTTCGAGGGCCAAGGCGTGGTCATGGCGGCCTCAGGCGCCATC AGCCGTCAAGCCGCCGGGGCCTACGTCACAGCCTTTGTCCTCCGCCACGT CCTCCACGAAACTCTGCCCATCGAAATATTTTACTCTGGACCCGAAGAAG CCTTCCATGGCCCCGTTCTCGAAGCGCTAAAAACTCTCTCAAATGTCCAC CTGATTGACCTCGAACAAGCCTTGACAGACCTCCACTCTCGCGGCCTCAT GTCCCTCGAGCCTCTCCCCCCACTGCGTGTTCTCAAAGGATACGCAGCCA AAGTCTACGCGATGCAGGCCTGCTCCTTCCAAGAAGCTCTCTTGTTCGAT GCGGGTGTGATCCCGTTTGCGTCCTCCTCGCTGTTTTTCTCCCTCCCTTC TTACAAGCGACAAGGTCTTGCTGTGTTTAGTGATTATGTAAGCATCGACC AAGGATTGTGGAAACCCTTCCTGCGGGACATGTGCCTTGACCTTAACCAC GTCTTCCGTTCATTGGGAGGACGTGAATTGGACAGTTCGTGTGTAGTGAT GGATAAACTCAAAAACGCCGATGCCCTCAGTGTGGCTGTTGCTCTGAATG GGCCCTTGCAGCGCACTACCTACGTCTCTCTTCTGGGCGATAAGGATACC TGGGCGCTGGGCATGTTCTTCGTCGGGAAGACGGTGTCTGTGCACGAGGT AGAACCTGGTTATCTACTGGTAGCTCGCGAGGAAGGGAGGGAAGAAGGGC CACGACATGCGCGGAAGGTGAATGGTCATTTGCAGTTTTTGAGGAATAAG TCGGTGCAGGAACCCCCTGGGCTCGTGCCTTTGCACCACAACAACCAATT GCTGGATTTGCGAGAATTTCCGTTGATTGGAAATAGGATCTATATGGATG TTTTCTCTAAGTTGGGGGATGTGCTGATGCCGGGGACGAGGAGGAGAGAT TGTAGAGGGTTTGGAGTGGAGGGACTTTTGCCACTGTCGAGTGTGATGAG AGAGGCGTACGGTGAGATTGCGCGGGACTTAAAGGAGAAGGGGATTAATC ATTGCGTATGTCGGGATGATTGGATGTCGTGCGAGGCGGATATTGAAAGG TTAAGGAAGAAGCATTGGGTGTTGCGGGTCATTGATTACTGGGCTCCAAC ACGATGGAAAGAGGCAAGGATGAAGGAGGCACGGGCACGACAAGCAAAAG ACGCGGCAGCAGCACCCTGA back to top
|