NO01G04260.1, NO01G04260.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G04260.1
Unique NameNO01G04260.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length981
Alignment locationchr1:1140089..1141069 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1140089..1141069 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G04260.1 vs.
Match: EWM29377.1 (Cystinosin/ERS1p repeat containing protein [Nannochloropsis gaditana])

HSP 1 Score: 326.2 bits (835), Expect = 1.100e-85
Identity = 200/326 (61.35%), Postives = 249/326 (76.38%), Query Frame = 0 
Query:    1 MARILAGPFSLACVVVALAASSTTRAFAVGQSKNLMASAHATARSQIKTSSPLSSASSSSRSSASMRMMLAMPLSR-----TALSSTPSA-SILLPFLRQRGGAGSTSISASPTKVGGLDTLTLLSTFMGYTIIAGSMLFKVPQAARIFRKKSASGLSSSMYVLETVGIAMSLAFSIRNAFPFSTYGEAVFILLQNVIIMSGISLYSNQPRPPVLYLSLLAASLFFALTISPAVPMVVVSILQSISIPLLNFSRIPQLLLNHRTKSTGELAPSTLILQAAGNLARIFTTFVQVQNNLFLLSCVVAMLFNGALVAQFFMYRGQPPVR 321
            MARI    F LA  +VALA SSTTRAFA G      ++ H   R +    +P+ ++  S+     + +   MP+S      ++L++ PS+ S ++P L +RGG    +I A+P K  G D LTLLS   GY +IAGSMLFK+PQAARIFRKKSA+GLSSSMY+LET+GIAMSLAFSIRNAFPFSTYGE VFI+LQNV+IM+GISLYS++P PP+L LSLL ASLFFA TISP  PM++VSILQ++SIPLLNFSR+PQLLLN+R KSTGELAPSTLILQA GN+ARIFTT VQ+QN L+LLSCV A +FNGALVAQ+++YR +  ++
Sbjct:   56 MARI----FGLA--LVALAVSSTTRAFATGPQNVFKSTIHGGLRPR---KTPMLASLCSAPHHHVLNVGKGMPVSNRPLPSSSLAAAPSSISSIVPILFRRGGV---AIPAAPGK--GFDFLTLLSRTTGYVVIAGSMLFKLPQAARIFRKKSAAGLSSSMYILETIGIAMSLAFSIRNAFPFSTYGETVFIVLQNVVIMAGISLYSDEPSPPILALSLLLASLFFAYTISPLAPMLLVSILQTVSIPLLNFSRVPQLLLNYRNKSTGELAPSTLILQAVGNVARIFTTMVQLQNTLYLLSCVAAFIFNGALVAQYYLYRDRASMK 367
The following BLAST results are available for this feature:
BLAST of NO01G04260.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29377.11.100e-8561.35Cystinosin/ERS1p repeat containing protein [Nannoc... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G04260NO01G04260Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G04260.1NO01G04260.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G04260.1.cds1NO01G04260.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G04260.1 ID=NO01G04260.1|Name=NO01G04260.1|organism=Nannochloropsis oceanica|type=mRNA|length=981bp
ATGGCCCGAATCTTAGCGGGGCCCTTTAGCCTGGCTTGTGTTGTCGTCGC
CTTAGCAGCGAGTAGCACGACGCGAGCTTTTGCCGTGGGCCAATCCAAAA
ATTTGATGGCTTCCGCCCATGCCACTGCGCGGTCACAGATAAAAACCTCC
TCTCCTTTGTCCTCGGCCAGCTCAAGCAGCAGAAGTAGCGCTTCCATGCG
GATGATGTTGGCCATGCCCCTCAGTCGCACCGCCCTTTCCTCTACTCCTT
CAGCGTCAATCCTGCTGCCCTTTTTGCGTCAACGCGGTGGGGCAGGCTCA
ACTTCCATATCTGCCAGCCCTACTAAGGTAGGAGGTCTCGACACCTTGAC
CCTTCTAAGCACCTTTATGGGCTACACCATCATCGCCGGCTCTATGCTCT
TCAAGGTCCCGCAAGCCGCCCGCATCTTCCGCAAGAAATCAGCTTCTGGC
TTATCTTCATCCATGTATGTGCTTGAAACGGTTGGAATCGCCATGTCCCT
TGCATTCAGCATCCGCAACGCCTTTCCCTTCTCCACCTATGGCGAGGCGG
TCTTCATCCTCCTGCAAAATGTCATCATCATGAGCGGGATTTCACTCTAC
TCCAATCAACCCCGCCCCCCTGTCCTTTACCTTTCACTCCTTGCTGCCTC
TTTATTTTTTGCCTTAACGATCAGTCCTGCGGTCCCTATGGTCGTCGTCT
CGATCCTCCAAAGCATCTCAATCCCCCTCTTAAACTTCTCCCGGATCCCC
CAACTTCTCCTGAACCACCGCACAAAAAGTACGGGTGAGCTGGCCCCGTC
CACATTAATTCTTCAGGCAGCAGGCAATTTAGCAAGGATTTTCACGACCT
TTGTACAGGTGCAGAATAACCTGTTTTTGTTGTCGTGTGTGGTGGCCATG
CTCTTCAATGGGGCATTGGTTGCGCAGTTCTTCATGTACCGGGGCCAGCC
TCCAGTAAGGCCATCCAAGGAGGTGTGGTAA
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protein sequence of NO01G04260.1

>NO01G04260.1-protein ID=NO01G04260.1-protein|Name=NO01G04260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=327bp
MARILAGPFSLACVVVALAASSTTRAFAVGQSKNLMASAHATARSQIKTS
SPLSSASSSSRSSASMRMMLAMPLSRTALSSTPSASILLPFLRQRGGAGS
TSISASPTKVGGLDTLTLLSTFMGYTIIAGSMLFKVPQAARIFRKKSASG
LSSSMYVLETVGIAMSLAFSIRNAFPFSTYGEAVFILLQNVIIMSGISLY
SNQPRPPVLYLSLLAASLFFALTISPAVPMVVVSILQSISIPLLNFSRIP
QLLLNHRTKSTGELAPSTLILQAAGNLARIFTTFVQVQNNLFLLSCVVAM
LFNGALVAQFFMYRGQPPVRPSKEVW*
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mRNA from alignment at chr1:1140089..1141069-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G04260.1 ID=NO01G04260.1|Name=NO01G04260.1|organism=Nannochloropsis oceanica|type=mRNA|length=981bp|location=Sequence derived from alignment at chr1:1140089..1141069- (Nannochloropsis oceanica)
ATGGCCCGAATCTTAGCGGGGCCCTTTAGCCTGGCTTGTGTTGTCGTCGC
CTTAGCAGCGAGTAGCACGACGCGAGCTTTTGCCGTGGGCCAATCCAAAA
ATTTGATGGCTTCCGCCCATGCCACTGCGCGGTCACAGATAAAAACCTCC
TCTCCTTTGTCCTCGGCCAGCTCAAGCAGCAGAAGTAGCGCTTCCATGCG
GATGATGTTGGCCATGCCCCTCAGTCGCACCGCCCTTTCCTCTACTCCTT
CAGCGTCAATCCTGCTGCCCTTTTTGCGTCAACGCGGTGGGGCAGGCTCA
ACTTCCATATCTGCCAGCCCTACTAAGGTAGGAGGTCTCGACACCTTGAC
CCTTCTAAGCACCTTTATGGGCTACACCATCATCGCCGGCTCTATGCTCT
TCAAGGTCCCGCAAGCCGCCCGCATCTTCCGCAAGAAATCAGCTTCTGGC
TTATCTTCATCCATGTATGTGCTTGAAACGGTTGGAATCGCCATGTCCCT
TGCATTCAGCATCCGCAACGCCTTTCCCTTCTCCACCTATGGCGAGGCGG
TCTTCATCCTCCTGCAAAATGTCATCATCATGAGCGGGATTTCACTCTAC
TCCAATCAACCCCGCCCCCCTGTCCTTTACCTTTCACTCCTTGCTGCCTC
TTTATTTTTTGCCTTAACGATCAGTCCTGCGGTCCCTATGGTCGTCGTCT
CGATCCTCCAAAGCATCTCAATCCCCCTCTTAAACTTCTCCCGGATCCCC
CAACTTCTCCTGAACCACCGCACAAAAAGTACGGGTGAGCTGGCCCCGTC
CACATTAATTCTTCAGGCAGCAGGCAATTTAGCAAGGATTTTCACGACCT
TTGTACAGGTGCAGAATAACCTGTTTTTGTTGTCGTGTGTGGTGGCCATG
CTCTTCAATGGGGCATTGGTTGCGCAGTTCTTCATGTACCGGGGCCAGCC
TCCAGTAAGGCCATCCAAGGAGGTGTGGTAA
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Coding sequence (CDS) from alignment at chr1:1140089..1141069-

>NO01G04260.1 ID=NO01G04260.1|Name=NO01G04260.1|organism=Nannochloropsis oceanica|type=CDS|length=981bp|location=Sequence derived from alignment at chr1:1140089..1141069- (Nannochloropsis oceanica)
ATGGCCCGAATCTTAGCGGGGCCCTTTAGCCTGGCTTGTGTTGTCGTCGC
CTTAGCAGCGAGTAGCACGACGCGAGCTTTTGCCGTGGGCCAATCCAAAA
ATTTGATGGCTTCCGCCCATGCCACTGCGCGGTCACAGATAAAAACCTCC
TCTCCTTTGTCCTCGGCCAGCTCAAGCAGCAGAAGTAGCGCTTCCATGCG
GATGATGTTGGCCATGCCCCTCAGTCGCACCGCCCTTTCCTCTACTCCTT
CAGCGTCAATCCTGCTGCCCTTTTTGCGTCAACGCGGTGGGGCAGGCTCA
ACTTCCATATCTGCCAGCCCTACTAAGGTAGGAGGTCTCGACACCTTGAC
CCTTCTAAGCACCTTTATGGGCTACACCATCATCGCCGGCTCTATGCTCT
TCAAGGTCCCGCAAGCCGCCCGCATCTTCCGCAAGAAATCAGCTTCTGGC
TTATCTTCATCCATGTATGTGCTTGAAACGGTTGGAATCGCCATGTCCCT
TGCATTCAGCATCCGCAACGCCTTTCCCTTCTCCACCTATGGCGAGGCGG
TCTTCATCCTCCTGCAAAATGTCATCATCATGAGCGGGATTTCACTCTAC
TCCAATCAACCCCGCCCCCCTGTCCTTTACCTTTCACTCCTTGCTGCCTC
TTTATTTTTTGCCTTAACGATCAGTCCTGCGGTCCCTATGGTCGTCGTCT
CGATCCTCCAAAGCATCTCAATCCCCCTCTTAAACTTCTCCCGGATCCCC
CAACTTCTCCTGAACCACCGCACAAAAAGTACGGGTGAGCTGGCCCCGTC
CACATTAATTCTTCAGGCAGCAGGCAATTTAGCAAGGATTTTCACGACCT
TTGTACAGGTGCAGAATAACCTGTTTTTGTTGTCGTGTGTGGTGGCCATG
CTCTTCAATGGGGCATTGGTTGCGCAGTTCTTCATGTACCGGGGCCAGCC
TCCAGTAAGGCCATCCAAGGAGGTGTGGTAA
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Synonyms
Publications