NO01G04210.1, NO01G04210.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G04210.1
Unique NameNO01G04210.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2371
Alignment locationchr1:1125542..1127912 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1125542..1127912 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G04210.1 vs.
Match: XP_005855131.1 (hsp90-like protein [Nannochloropsis gaditana CCMP526]; EKU21230.1 hsp90-like protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 666.8 bits (1719), Expect = 6.500e-188
Identity = 370/600 (61.67%), Postives = 427/600 (71.17%), Query Frame = 0 
Query:    1 MTTPSEGPEDTPADESAVPPPDSPSRKRAR---VEAAP--DTITNTTTTPTSKTALRETLLDPTHVTALRQAYLQALGYPHCVVQDVLDPSFFRDLREEMVGSLSATFKETDLYKLYQTGDLANLDTNDPDITDRLSNLLALRQAIYSQTFRAFVRKITGCQPLTDRTDCSSNLYAQGCHLLCHDDVIGTRCIAYIIYLTDPEETWEEMDGGALEIYPPSEPGKLGVPAVAPVKSYLPLPNTMAFFAVLPGQSFHAVEEVYKDGKMRLSVSGWYHAAATPSGVPDLASLNQPQARRDDDSTVFS------TLPQLPSLSIATDSSLAKWVNPTYLKPGAMEQILTRFQEDGSILLHGFLLPEVAQRAATLFRRQDEIDGVGHGIKAAHGVGFVKGTWVPVGPPHKQRYMRLVAGPAATEEKEDSAEKDSNNSHISIAEVALFLTTLRDELFGSAVFALYLARLTGVEPSTVNTEARRFRPGLDYTLAHYGIVTKDHRLDATLSFVDDEKKGRKAAWGSGDVGGFECYIKAEEGNDGVEAAESYRRQAQGKEEEEEDVLTVFAAHNALSLVLRQTRAMRFVKYVSATAPGSRWDVISEYSL 590
            MT  +E   D   D++A     SPSRKR +   V++AP   + ++  +   + TAL + LLD +H+  L+Q+Y  A GYPHCVV+DVL+  FFR+LREEMV SL+ATFKETDL+KLYQTGDLANLD +DP++  ++  LLALR AIYS  FRAFVR+ITGC+PLTDRTDCSSNLY QGCHLLCHDDVIGTRCI++IIYLTDP+ETW   DGGALEIYP S    LGVP   P++++ P PNTMAFF VLPGQSFHAVEEVY + KMRLS+SGWYHA   P G   LASLNQ Q R+D+    FS       L +  S   + +  LA+WVNPTYL PGA+EQI  RFQ D SILLH FLLP VA +AA L R QD+ D VG G K    VG     W  +GPPHKQRY+RL     AT    D  EK         A+ A  L      LFGS  FA YLARLTG  PS V TEARRFRPGLDYTLAHYGI+TKD RLDATL+FVDD  K +K  W SGDVGGF CYIKAE GNDG EAAESYRRQA    EE++ VL V AAHNALSLVLR+T+AMRFVKYVSA APGSRWDV+SEY L
Sbjct:    1 MTVSAEFQADILLDKTA--DAGSPSRKRRKKSDVDSAPLSQSSSDVPSNAEAVTALNDCLLDLSHIAKLKQSYPSAPGYPHCVVKDVLEAKFFRELREEMVTSLAATFKETDLFKLYQTGDLANLDGSDPEVRRKMPRLLALRDAIYSPKFRAFVREITGCRPLTDRTDCSSNLYTQGCHLLCHDDVIGTRCISFIIYLTDPDETWGAEDGGALEIYPLS-GDSLGVPKAVPLQNHPPKPNTMAFFTVLPGQSFHAVEEVYSE-KMRLSISGWYHADDPPMGAEALASLNQLQMRQDETPQAFSPLRLARALHRTASGPDSVNPLLARWVNPTYLTPGAIEQIAARFQADKSILLHEFLLPCVAMQAARLLRSQDQADRVGGGQKPTSEVGLAMMPWELIGPPHKQRYLRL----GATGLSSDPVEK---------AKTATDLMAALRGLFGSEAFARYLARLTGSIPSGVRTEARRFRPGLDYTLAHYGILTKDPRLDATLAFVDDGNKAKKELWESGDVGGFGCYIKAEVGNDGAEAAESYRRQAHA--EEDDQVLNVSAAHNALSLVLRETQAMRFVKYVSAAAPGSRWDVVSEYCL 581
The following BLAST results are available for this feature:
BLAST of NO01G04210.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855131.16.500e-18861.67hsp90-like protein [Nannochloropsis gaditana CCMP5... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G04210NO01G04210Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G04210.1NO01G04210.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G04210.1.cds1NO01G04210.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G04210.1 ID=NO01G04210.1|Name=NO01G04210.1|organism=Nannochloropsis oceanica|type=mRNA|length=2371bp
CGGACTGGCTGGGGCATGATTGAGGCTTGGAAATAATTTGGATCCCAGGC
AACGCCTTTTTAGTCACGGTAGATCTCGTCTCCGCTACACGTGGACAAAT
GCTTACGTCTGATTATACTCCGCATGTTGGCTGCTTTAGATTAGGGCCTG
GTGATGTGACGGGAGGGCTGCCAGATTGGAGGAAAGGTCGAAAAGAGCGC
GACCAACCTCCCTACTTACTGGGTGCGCTGTGCCAGTGAGGCCATATGAC
AGCCAAAACCGAAGCCACAAATCCACATATACGCTTGCATGCATGTAGCC
AAATAATCTCTCGACGGATAAAATCACGTCAGATGTCATCAGAGATGGTG
GGACTAATTCTGTCTCAAAAGCTGCTGCAAAATCAACACTTCTGTCATCC
TCCTTCCTGAACTCCTCCTCCACGGTCGACATTTCACAGCAAGCTACATC
CCGTAGCCACTGACAAAAGTCATGACAACGCCTTCTGAAGGCCCTGAAGA
TACTCCCGCCGATGAATCTGCAGTGCCGCCCCCCGACTCTCCAAGCCGCA
AGCGCGCGCGCGTCGAGGCTGCGCCCGACACCATTACAAATACCACCACT
ACACCGACCTCAAAAACAGCGCTCCGCGAGACCTTGCTGGACCCAACCCA
TGTCACGGCGTTGCGCCAGGCGTATCTACAAGCCTTGGGCTATCCCCACT
GCGTCGTGCAAGACGTCCTGGACCCTTCTTTTTTCCGAGATCTCCGGGAG
GAAATGGTGGGCTCGCTCTCGGCTACATTCAAGGAGACGGACCTCTACAA
GCTCTACCAGACAGGAGACCTGGCCAATTTGGACACCAACGATCCGGACA
TTACTGATCGATTGTCAAATTTATTAGCCTTGCGCCAAGCCATCTACTCA
CAGACGTTCCGGGCATTCGTAAGGAAGATTACGGGCTGTCAACCCTTGAC
GGACCGCACGGACTGCTCCTCCAATTTGTACGCTCAAGGCTGTCACTTGC
TTTGCCATGATGACGTGATTGGCACACGCTGTATTGCTTACATCATATAC
CTGACCGACCCGGAGGAGACCTGGGAAGAGATGGATGGAGGCGCATTGGA
GATCTACCCTCCCTCGGAGCCAGGCAAACTCGGCGTCCCCGCCGTGGCTC
CCGTTAAGAGTTACCTGCCCCTGCCCAACACCATGGCCTTTTTCGCCGTC
CTCCCCGGACAGAGTTTCCACGCTGTGGAAGAGGTGTATAAGGACGGAAA
GATGCGTTTGAGTGTCTCGGGGTGGTATCACGCTGCTGCCACTCCCTCAG
GAGTCCCAGACCTTGCCTCATTGAATCAACCGCAGGCTCGAAGAGACGAC
GACTCCACGGTTTTCTCCACCCTACCACAACTACCATCCCTTTCTATTGC
GACCGACTCCTCGCTCGCCAAGTGGGTAAATCCGACGTATTTGAAGCCAG
GGGCCATGGAGCAAATATTGACTCGTTTTCAAGAAGATGGCAGTATCTTA
CTGCATGGATTTTTGCTGCCTGAGGTGGCTCAACGTGCAGCGACGTTGTT
TCGACGGCAAGACGAGATCGATGGAGTGGGACACGGCATCAAAGCTGCAC
ATGGTGTGGGGTTTGTCAAGGGGACTTGGGTGCCAGTGGGGCCACCGCAC
AAACAACGGTACATGCGTTTGGTGGCTGGACCTGCTGCGACGGAGGAGAA
AGAGGACAGTGCAGAGAAGGACAGCAACAACAGCCACATTTCTATTGCAG
AAGTTGCTTTGTTTCTGACGACGTTGCGTGATGAGCTTTTTGGATCGGCT
GTTTTTGCCCTCTACCTTGCCCGATTGACCGGCGTTGAGCCCTCGACCGT
TAATACCGAGGCCCGTCGTTTTCGCCCCGGGTTGGACTACACGCTCGCCC
ACTACGGAATCGTGACCAAAGACCATCGCCTGGATGCGACCTTGTCATTT
GTGGATGATGAGAAGAAGGGAAGGAAAGCTGCTTGGGGTTCCGGGGACGT
TGGGGGGTTTGAGTGTTACATCAAGGCGGAGGAGGGAAATGATGGCGTGG
AGGCTGCTGAGAGCTACAGGAGGCAGGCACAAGGCAAAGAGGAGGAGGAA
GAAGATGTCTTGACTGTGTTTGCCGCGCACAATGCGTTGAGTTTGGTGTT
ACGGCAGACGCGTGCGATGCGGTTTGTGAAATATGTGAGTGCGACAGCGC
CTGGGAGCAGGTGGGATGTGATAAGTGAGTATTCTCTAAGGCAAGGGGGG
AAGGAGGAGGGAAAATATGGAGGGGTGGAGTGGAAGAATGTTGCATAAAG
CAATGCAGCGAAACACGGGAGCGGGCCAATAATGAAAGAAATGACGAGTA
TCGCGGAGCACAGCTAAGACA
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protein sequence of NO01G04210.1

>NO01G04210.1-protein ID=NO01G04210.1-protein|Name=NO01G04210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=609bp
MTTPSEGPEDTPADESAVPPPDSPSRKRARVEAAPDTITNTTTTPTSKTA
LRETLLDPTHVTALRQAYLQALGYPHCVVQDVLDPSFFRDLREEMVGSLS
ATFKETDLYKLYQTGDLANLDTNDPDITDRLSNLLALRQAIYSQTFRAFV
RKITGCQPLTDRTDCSSNLYAQGCHLLCHDDVIGTRCIAYIIYLTDPEET
WEEMDGGALEIYPPSEPGKLGVPAVAPVKSYLPLPNTMAFFAVLPGQSFH
AVEEVYKDGKMRLSVSGWYHAAATPSGVPDLASLNQPQARRDDDSTVFST
LPQLPSLSIATDSSLAKWVNPTYLKPGAMEQILTRFQEDGSILLHGFLLP
EVAQRAATLFRRQDEIDGVGHGIKAAHGVGFVKGTWVPVGPPHKQRYMRL
VAGPAATEEKEDSAEKDSNNSHISIAEVALFLTTLRDELFGSAVFALYLA
RLTGVEPSTVNTEARRFRPGLDYTLAHYGIVTKDHRLDATLSFVDDEKKG
RKAAWGSGDVGGFECYIKAEEGNDGVEAAESYRRQAQGKEEEEEDVLTVF
AAHNALSLVLRQTRAMRFVKYVSATAPGSRWDVISEYSLRQGGKEEGKYG
GVEWKNVA*
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mRNA from alignment at chr1:1125542..1127912+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G04210.1 ID=NO01G04210.1|Name=NO01G04210.1|organism=Nannochloropsis oceanica|type=mRNA|length=2371bp|location=Sequence derived from alignment at chr1:1125542..1127912+ (Nannochloropsis oceanica)
CGGACTGGCTGGGGCATGATTGAGGCTTGGAAATAATTTGGATCCCAGGC
AACGCCTTTTTAGTCACGGTAGATCTCGTCTCCGCTACACGTGGACAAAT
GCTTACGTCTGATTATACTCCGCATGTTGGCTGCTTTAGATTAGGGCCTG
GTGATGTGACGGGAGGGCTGCCAGATTGGAGGAAAGGTCGAAAAGAGCGC
GACCAACCTCCCTACTTACTGGGTGCGCTGTGCCAGTGAGGCCATATGAC
AGCCAAAACCGAAGCCACAAATCCACATATACGCTTGCATGCATGTAGCC
AAATAATCTCTCGACGGATAAAATCACGTCAGATGTCATCAGAGATGGTG
GGACTAATTCTGTCTCAAAAGCTGCTGCAAAATCAACACTTCTGTCATCC
TCCTTCCTGAACTCCTCCTCCACGGTCGACATTTCACAGCAAGCTACATC
CCGTAGCCACTGACAAAAGTCATGACAACGCCTTCTGAAGGCCCTGAAGA
TACTCCCGCCGATGAATCTGCAGTGCCGCCCCCCGACTCTCCAAGCCGCA
AGCGCGCGCGCGTCGAGGCTGCGCCCGACACCATTACAAATACCACCACT
ACACCGACCTCAAAAACAGCGCTCCGCGAGACCTTGCTGGACCCAACCCA
TGTCACGGCGTTGCGCCAGGCGTATCTACAAGCCTTGGGCTATCCCCACT
GCGTCGTGCAAGACGTCCTGGACCCTTCTTTTTTCCGAGATCTCCGGGAG
GAAATGGTGGGCTCGCTCTCGGCTACATTCAAGGAGACGGACCTCTACAA
GCTCTACCAGACAGGAGACCTGGCCAATTTGGACACCAACGATCCGGACA
TTACTGATCGATTGTCAAATTTATTAGCCTTGCGCCAAGCCATCTACTCA
CAGACGTTCCGGGCATTCGTAAGGAAGATTACGGGCTGTCAACCCTTGAC
GGACCGCACGGACTGCTCCTCCAATTTGTACGCTCAAGGCTGTCACTTGC
TTTGCCATGATGACGTGATTGGCACACGCTGTATTGCTTACATCATATAC
CTGACCGACCCGGAGGAGACCTGGGAAGAGATGGATGGAGGCGCATTGGA
GATCTACCCTCCCTCGGAGCCAGGCAAACTCGGCGTCCCCGCCGTGGCTC
CCGTTAAGAGTTACCTGCCCCTGCCCAACACCATGGCCTTTTTCGCCGTC
CTCCCCGGACAGAGTTTCCACGCTGTGGAAGAGGTGTATAAGGACGGAAA
GATGCGTTTGAGTGTCTCGGGGTGGTATCACGCTGCTGCCACTCCCTCAG
GAGTCCCAGACCTTGCCTCATTGAATCAACCGCAGGCTCGAAGAGACGAC
GACTCCACGGTTTTCTCCACCCTACCACAACTACCATCCCTTTCTATTGC
GACCGACTCCTCGCTCGCCAAGTGGGTAAATCCGACGTATTTGAAGCCAG
GGGCCATGGAGCAAATATTGACTCGTTTTCAAGAAGATGGCAGTATCTTA
CTGCATGGATTTTTGCTGCCTGAGGTGGCTCAACGTGCAGCGACGTTGTT
TCGACGGCAAGACGAGATCGATGGAGTGGGACACGGCATCAAAGCTGCAC
ATGGTGTGGGGTTTGTCAAGGGGACTTGGGTGCCAGTGGGGCCACCGCAC
AAACAACGGTACATGCGTTTGGTGGCTGGACCTGCTGCGACGGAGGAGAA
AGAGGACAGTGCAGAGAAGGACAGCAACAACAGCCACATTTCTATTGCAG
AAGTTGCTTTGTTTCTGACGACGTTGCGTGATGAGCTTTTTGGATCGGCT
GTTTTTGCCCTCTACCTTGCCCGATTGACCGGCGTTGAGCCCTCGACCGT
TAATACCGAGGCCCGTCGTTTTCGCCCCGGGTTGGACTACACGCTCGCCC
ACTACGGAATCGTGACCAAAGACCATCGCCTGGATGCGACCTTGTCATTT
GTGGATGATGAGAAGAAGGGAAGGAAAGCTGCTTGGGGTTCCGGGGACGT
TGGGGGGTTTGAGTGTTACATCAAGGCGGAGGAGGGAAATGATGGCGTGG
AGGCTGCTGAGAGCTACAGGAGGCAGGCACAAGGCAAAGAGGAGGAGGAA
GAAGATGTCTTGACTGTGTTTGCCGCGCACAATGCGTTGAGTTTGGTGTT
ACGGCAGACGCGTGCGATGCGGTTTGTGAAATATGTGAGTGCGACAGCGC
CTGGGAGCAGGTGGGATGTGATAAGTGAGTATTCTCTAAGGCAAGGGGGG
AAGGAGGAGGGAAAATATGGAGGGGTGGAGTGGAAGAATGTTGCATAAAG
CAATGCAGCGAAACACGGGAGCGGGCCAATAATGAAAGAAATGACGAGTA
TCGCGGAGCACAGCTAAGACA
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Coding sequence (CDS) from alignment at chr1:1125542..1127912+

>NO01G04210.1 ID=NO01G04210.1|Name=NO01G04210.1|organism=Nannochloropsis oceanica|type=CDS|length=1827bp|location=Sequence derived from alignment at chr1:1125542..1127912+ (Nannochloropsis oceanica)
ATGACAACGCCTTCTGAAGGCCCTGAAGATACTCCCGCCGATGAATCTGC
AGTGCCGCCCCCCGACTCTCCAAGCCGCAAGCGCGCGCGCGTCGAGGCTG
CGCCCGACACCATTACAAATACCACCACTACACCGACCTCAAAAACAGCG
CTCCGCGAGACCTTGCTGGACCCAACCCATGTCACGGCGTTGCGCCAGGC
GTATCTACAAGCCTTGGGCTATCCCCACTGCGTCGTGCAAGACGTCCTGG
ACCCTTCTTTTTTCCGAGATCTCCGGGAGGAAATGGTGGGCTCGCTCTCG
GCTACATTCAAGGAGACGGACCTCTACAAGCTCTACCAGACAGGAGACCT
GGCCAATTTGGACACCAACGATCCGGACATTACTGATCGATTGTCAAATT
TATTAGCCTTGCGCCAAGCCATCTACTCACAGACGTTCCGGGCATTCGTA
AGGAAGATTACGGGCTGTCAACCCTTGACGGACCGCACGGACTGCTCCTC
CAATTTGTACGCTCAAGGCTGTCACTTGCTTTGCCATGATGACGTGATTG
GCACACGCTGTATTGCTTACATCATATACCTGACCGACCCGGAGGAGACC
TGGGAAGAGATGGATGGAGGCGCATTGGAGATCTACCCTCCCTCGGAGCC
AGGCAAACTCGGCGTCCCCGCCGTGGCTCCCGTTAAGAGTTACCTGCCCC
TGCCCAACACCATGGCCTTTTTCGCCGTCCTCCCCGGACAGAGTTTCCAC
GCTGTGGAAGAGGTGTATAAGGACGGAAAGATGCGTTTGAGTGTCTCGGG
GTGGTATCACGCTGCTGCCACTCCCTCAGGAGTCCCAGACCTTGCCTCAT
TGAATCAACCGCAGGCTCGAAGAGACGACGACTCCACGGTTTTCTCCACC
CTACCACAACTACCATCCCTTTCTATTGCGACCGACTCCTCGCTCGCCAA
GTGGGTAAATCCGACGTATTTGAAGCCAGGGGCCATGGAGCAAATATTGA
CTCGTTTTCAAGAAGATGGCAGTATCTTACTGCATGGATTTTTGCTGCCT
GAGGTGGCTCAACGTGCAGCGACGTTGTTTCGACGGCAAGACGAGATCGA
TGGAGTGGGACACGGCATCAAAGCTGCACATGGTGTGGGGTTTGTCAAGG
GGACTTGGGTGCCAGTGGGGCCACCGCACAAACAACGGTACATGCGTTTG
GTGGCTGGACCTGCTGCGACGGAGGAGAAAGAGGACAGTGCAGAGAAGGA
CAGCAACAACAGCCACATTTCTATTGCAGAAGTTGCTTTGTTTCTGACGA
CGTTGCGTGATGAGCTTTTTGGATCGGCTGTTTTTGCCCTCTACCTTGCC
CGATTGACCGGCGTTGAGCCCTCGACCGTTAATACCGAGGCCCGTCGTTT
TCGCCCCGGGTTGGACTACACGCTCGCCCACTACGGAATCGTGACCAAAG
ACCATCGCCTGGATGCGACCTTGTCATTTGTGGATGATGAGAAGAAGGGA
AGGAAAGCTGCTTGGGGTTCCGGGGACGTTGGGGGGTTTGAGTGTTACAT
CAAGGCGGAGGAGGGAAATGATGGCGTGGAGGCTGCTGAGAGCTACAGGA
GGCAGGCACAAGGCAAAGAGGAGGAGGAAGAAGATGTCTTGACTGTGTTT
GCCGCGCACAATGCGTTGAGTTTGGTGTTACGGCAGACGCGTGCGATGCG
GTTTGTGAAATATGTGAGTGCGACAGCGCCTGGGAGCAGGTGGGATGTGA
TAAGTGAGTATTCTCTAAGGCAAGGGGGGAAGGAGGAGGGAAAATATGGA
GGGGTGGAGTGGAAGAATGTTGCATAA
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Synonyms
Publications