NO01G04200.1, NO01G04200.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G04200.1
Unique NameNO01G04200.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1935
Alignment locationchr1:1123357..1125291 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1123357..1125291 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G04200.1 vs.
Match: EWM29346.1 (telomeric repeat-binding factor [Nannochloropsis gaditana])

HSP 1 Score: 465.7 bits (1197), Expect = 2.300e-127
Identity = 326/662 (49.24%), Postives = 406/662 (61.33%), Query Frame = 0 
Query:   16 ELLCMMDWAAHFRDHSTLQALARTSNDAGLSIPSNSVLFKRLLLAGLDEASGIAKVEEDFESVLSILTEAEGWLLRGVPGHDLFDLKLKIRRQLVLSPLRNSLPDDLDSVSMRSLATLNNERYWYLLDKIFPLETSRRASLSGSDAAGWVSPGARHEGEYRKVVEIKERKQLLDVMRGDGSPLDGDNMDMNKVLYLLKTYSKEGFLAEVGQFTRQVESKLLPDPEPFKEGGEVWNGGGGRRGREVASLLGRDPRTVLSAAGRARERLQNWSRASGLVSTEVEREATESKIRKHVHELRNAATAG--GVSGGRGSGRRRAE------QEQEGEEEGEEQE------------ESETDAQRLATNLRSSTRMLQNGLRERGLLNVRGVVGGGGGGGGGGRAGGVGGRTTNKKKRLNDPTRKGRLITFEDSQYAGSESSTGGE-----EEEDNVSVSESRRQAAARQRRTQTAAAAAAAAARLADRRKK-SQRGKPAALPPMSGERCRDVGEEAEEEEMAGERDEEQEEIRSTTESSSSSSGSE--EEDEERE---RIRALKRGGG--RRVLAAKRKARLQIEASGRSKRRQPKTHRSFWSSDEVADLKQAVLHDGMKGRWADILNSPKYLHLDFKLRTSVDLKDKWRGLERKAAAKGVTVEEVN 645
            ELL MM+WAAHFR +S L+ALA  + +AG+ + S+S +  R+ LAGL++    A  E DF +VL  L +A  WLL+ V   +LFDL+LKIRRQ+VLSPLR     + +      +A L+ ++YW LLD  FPLET+RRASLS        SPG R E  Y +VVE KERKQLLDV         G   D++KVLYLLKTYS+EGF AEV +FTR+VE++LL  PEP  E     +GGG   G      LG DPR + SA    + RL +W+R S LVS E EREATE K+R H   LR    AG  G  GGR  G R+ E      +E+E E E  E+E                DA+ LA NLR ST++L+ GL +RGLL +RG V GG G  G   A G        KKRL D TR GR ITFEDSQY G +S   G+     E+  N + +   RQ A   R  + A A+AAAAARLA+R     QRG+ A        + R+ GEE  EE+   E ++++E  + T E++ +  G    E DE R+   R R  K  GG  +R +A+KRK RL I+ SGRSKRRQPKTHR+ WS +EV DLK+AVLHDGMKGRWADILNSP Y HLDF LRTSVDLKDKWRGLERKAA+KG+TV EV+
Sbjct:   15 ELLSMMNWAAHFRLYSELEALAYAALNAGVYLQSDSPIGHRVFLAGLEDILDKAVDEHDFAAVLDTLQDAANWLLKAVSKQELFDLRLKIRRQMVLSPLRKVFSANSEVAVPSRVADLDMDKYWTLLDGTFPLETTRRASLSAERGDSLASPGLR-ENSYERVVEAKERKQLLDV---QDETRPGGGADIHKVLYLLKTYSREGFTAEVREFTRRVEARLLEPPEPLSED---LDGGGTPSG-----ALGNDPRLLASAPAHIQRRLGDWTRTSALVSNEAEREATEVKLRAHAQILRYTLEAGQRGCPGGRQEGERKGEGAEMGSEEEEAEAEAAEEEGMAEGRRRGSSSNQGMDARHLAKNLRRSTKVLREGLSQRGLLKIRGTVEGGEGMSGAELAPG-------HKKRLYDATRAGRSITFEDSQYVGDDSDEEGQRAREREKSGNTAAATQSRQLA---RENRLAKASAAAAARLAERSNAFHQRGEHAQNQVPFPLKTRNPGEEHPEEDGEKEAEQQEEGGKRTGEATGAPCGDTVLEADETRQGQGRGRGTKDRGGERKRTVASKRKLRLAIDNSGRSKRRQPKTHRTSWSQEEVGDLKRAVLHDGMKGRWADILNSPSYTHLDFNLRTSVDLKDKWRGLERKAASKGLTVAEVD 654
The following BLAST results are available for this feature:
BLAST of NO01G04200.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29346.12.300e-12749.24telomeric repeat-binding factor [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G04200NO01G04200Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G04200.1NO01G04200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G04200.1.cds1NO01G04200.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G04200.1 ID=NO01G04200.1|Name=NO01G04200.1|organism=Nannochloropsis oceanica|type=mRNA|length=1935bp
ATGGCTCCCGCTGTCGATAATCCCTCAATCTCTGCTGCGGCGGCAGAACT
CCTGTGCATGATGGACTGGGCTGCCCACTTCCGCGACCACAGCACTCTCC
AAGCCCTTGCTAGAACATCGAACGACGCAGGTCTAAGCATTCCATCCAAT
TCTGTGCTGTTTAAAAGACTGCTGCTGGCAGGATTAGACGAAGCCTCAGG
AATTGCAAAGGTCGAGGAGGACTTCGAATCGGTGCTCTCGATACTCACGG
AGGCCGAGGGCTGGCTCCTTCGCGGCGTTCCGGGCCACGATTTGTTCGAC
CTCAAGCTCAAGATTCGACGCCAACTCGTGCTCTCCCCTCTACGCAACTC
CTTGCCCGACGACTTGGACTCGGTTTCCATGCGGTCATTGGCGACTCTGA
ACAATGAGCGGTATTGGTATCTGCTGGATAAGATATTTCCTTTGGAGACG
TCGCGTCGGGCTTCTCTTTCGGGTAGCGATGCCGCTGGCTGGGTCAGCCC
CGGTGCGCGTCACGAGGGGGAATATCGCAAGGTTGTAGAGATAAAGGAGC
GGAAGCAGTTGTTGGACGTGATGAGGGGGGATGGGAGTCCGCTAGACGGA
GACAACATGGATATGAACAAGGTGTTGTACCTGCTCAAGACTTACTCGAA
GGAGGGATTTCTTGCGGAGGTAGGGCAGTTTACGCGACAGGTTGAATCAA
AGCTCTTGCCGGATCCTGAACCTTTCAAAGAAGGAGGTGAGGTTTGGAAT
GGTGGAGGAGGGAGGAGAGGAAGAGAGGTGGCGTCGTTGTTGGGGAGAGA
CCCACGCACTGTCCTGTCAGCTGCTGGTCGGGCCCGAGAGCGGTTGCAGA
ATTGGAGTCGGGCGAGTGGATTGGTGAGCACAGAGGTAGAGAGGGAAGCG
ACAGAGAGTAAGATACGCAAGCATGTGCATGAATTGCGAAATGCTGCTAC
AGCAGGGGGCGTATCGGGAGGGAGGGGATCGGGTAGACGACGTGCAGAGC
AAGAGCAGGAGGGAGAGGAAGAGGGAGAGGAGCAAGAAGAGAGTGAGACA
GACGCCCAGCGCTTGGCTACCAATCTACGCTCAAGCACCAGAATGCTGCA
AAACGGTCTTCGGGAGCGAGGCCTGTTGAATGTGCGGGGCGTTGTGGGAG
GTGGGGGGGGGGGCGGGGGAGGAGGAAGGGCAGGAGGAGTAGGAGGGAGA
ACGACAAACAAGAAGAAGCGTCTGAATGACCCGACGCGAAAGGGGCGCTT
GATCACGTTTGAGGACAGTCAGTATGCGGGATCAGAGAGCAGCACTGGCG
GGGAGGAAGAGGAGGACAATGTGTCTGTGTCGGAATCTCGGCGACAGGCA
GCGGCCCGGCAACGGCGCACGCAGACAGCAGCAGCAGCAGCAGCAGCCGC
TGCTCGTTTGGCGGACCGCCGCAAAAAGAGTCAGAGGGGCAAGCCGGCTG
CTCTACCCCCTATGTCGGGCGAGCGGTGCCGGGACGTTGGAGAGGAAGCA
GAGGAGGAAGAGATGGCGGGAGAAAGAGACGAGGAGCAGGAGGAGATTCG
TAGCACAACTGAGAGTAGCAGCAGCAGCAGTGGCAGTGAGGAAGAGGACG
AAGAGCGGGAGCGTATCAGAGCACTAAAGCGGGGTGGAGGCAGGCGGGTC
CTGGCAGCAAAAAGGAAAGCTCGCTTGCAGATCGAGGCCTCCGGGCGCAG
CAAGCGTCGGCAGCCCAAGACGCACCGCTCGTTTTGGTCGTCGGACGAGG
TAGCCGATTTGAAACAGGCAGTGTTGCATGATGGAATGAAAGGGCGATGG
GCGGATATTCTAAACAGTCCCAAGTACCTTCATTTGGACTTTAAGCTACG
GACGAGTGTGGATCTGAAGGATAAATGGCGGGGTTTGGAGCGCAAGGCGG
CGGCCAAGGGAGTGACGGTGGAGGAGGTGAATTAA
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protein sequence of NO01G04200.1

>NO01G04200.1-protein ID=NO01G04200.1-protein|Name=NO01G04200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=645bp
MAPAVDNPSISAAAAELLCMMDWAAHFRDHSTLQALARTSNDAGLSIPSN
SVLFKRLLLAGLDEASGIAKVEEDFESVLSILTEAEGWLLRGVPGHDLFD
LKLKIRRQLVLSPLRNSLPDDLDSVSMRSLATLNNERYWYLLDKIFPLET
SRRASLSGSDAAGWVSPGARHEGEYRKVVEIKERKQLLDVMRGDGSPLDG
DNMDMNKVLYLLKTYSKEGFLAEVGQFTRQVESKLLPDPEPFKEGGEVWN
GGGGRRGREVASLLGRDPRTVLSAAGRARERLQNWSRASGLVSTEVEREA
TESKIRKHVHELRNAATAGGVSGGRGSGRRRAEQEQEGEEEGEEQEESET
DAQRLATNLRSSTRMLQNGLRERGLLNVRGVVGGGGGGGGGGRAGGVGGR
TTNKKKRLNDPTRKGRLITFEDSQYAGSESSTGGEEEEDNVSVSESRRQA
AARQRRTQTAAAAAAAAARLADRRKKSQRGKPAALPPMSGERCRDVGEEA
EEEEMAGERDEEQEEIRSTTESSSSSSGSEEEDEERERIRALKRGGGRRV
LAAKRKARLQIEASGRSKRRQPKTHRSFWSSDEVADLKQAVLHDGMKGRW
ADILNSPKYLHLDFKLRTSVDLKDKWRGLERKAAAKGVTVEEVN*
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mRNA from alignment at chr1:1123357..1125291-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G04200.1 ID=NO01G04200.1|Name=NO01G04200.1|organism=Nannochloropsis oceanica|type=mRNA|length=1935bp|location=Sequence derived from alignment at chr1:1123357..1125291- (Nannochloropsis oceanica)
ATGGCTCCCGCTGTCGATAATCCCTCAATCTCTGCTGCGGCGGCAGAACT
CCTGTGCATGATGGACTGGGCTGCCCACTTCCGCGACCACAGCACTCTCC
AAGCCCTTGCTAGAACATCGAACGACGCAGGTCTAAGCATTCCATCCAAT
TCTGTGCTGTTTAAAAGACTGCTGCTGGCAGGATTAGACGAAGCCTCAGG
AATTGCAAAGGTCGAGGAGGACTTCGAATCGGTGCTCTCGATACTCACGG
AGGCCGAGGGCTGGCTCCTTCGCGGCGTTCCGGGCCACGATTTGTTCGAC
CTCAAGCTCAAGATTCGACGCCAACTCGTGCTCTCCCCTCTACGCAACTC
CTTGCCCGACGACTTGGACTCGGTTTCCATGCGGTCATTGGCGACTCTGA
ACAATGAGCGGTATTGGTATCTGCTGGATAAGATATTTCCTTTGGAGACG
TCGCGTCGGGCTTCTCTTTCGGGTAGCGATGCCGCTGGCTGGGTCAGCCC
CGGTGCGCGTCACGAGGGGGAATATCGCAAGGTTGTAGAGATAAAGGAGC
GGAAGCAGTTGTTGGACGTGATGAGGGGGGATGGGAGTCCGCTAGACGGA
GACAACATGGATATGAACAAGGTGTTGTACCTGCTCAAGACTTACTCGAA
GGAGGGATTTCTTGCGGAGGTAGGGCAGTTTACGCGACAGGTTGAATCAA
AGCTCTTGCCGGATCCTGAACCTTTCAAAGAAGGAGGTGAGGTTTGGAAT
GGTGGAGGAGGGAGGAGAGGAAGAGAGGTGGCGTCGTTGTTGGGGAGAGA
CCCACGCACTGTCCTGTCAGCTGCTGGTCGGGCCCGAGAGCGGTTGCAGA
ATTGGAGTCGGGCGAGTGGATTGGTGAGCACAGAGGTAGAGAGGGAAGCG
ACAGAGAGTAAGATACGCAAGCATGTGCATGAATTGCGAAATGCTGCTAC
AGCAGGGGGCGTATCGGGAGGGAGGGGATCGGGTAGACGACGTGCAGAGC
AAGAGCAGGAGGGAGAGGAAGAGGGAGAGGAGCAAGAAGAGAGTGAGACA
GACGCCCAGCGCTTGGCTACCAATCTACGCTCAAGCACCAGAATGCTGCA
AAACGGTCTTCGGGAGCGAGGCCTGTTGAATGTGCGGGGCGTTGTGGGAG
GTGGGGGGGGGGGCGGGGGAGGAGGAAGGGCAGGAGGAGTAGGAGGGAGA
ACGACAAACAAGAAGAAGCGTCTGAATGACCCGACGCGAAAGGGGCGCTT
GATCACGTTTGAGGACAGTCAGTATGCGGGATCAGAGAGCAGCACTGGCG
GGGAGGAAGAGGAGGACAATGTGTCTGTGTCGGAATCTCGGCGACAGGCA
GCGGCCCGGCAACGGCGCACGCAGACAGCAGCAGCAGCAGCAGCAGCCGC
TGCTCGTTTGGCGGACCGCCGCAAAAAGAGTCAGAGGGGCAAGCCGGCTG
CTCTACCCCCTATGTCGGGCGAGCGGTGCCGGGACGTTGGAGAGGAAGCA
GAGGAGGAAGAGATGGCGGGAGAAAGAGACGAGGAGCAGGAGGAGATTCG
TAGCACAACTGAGAGTAGCAGCAGCAGCAGTGGCAGTGAGGAAGAGGACG
AAGAGCGGGAGCGTATCAGAGCACTAAAGCGGGGTGGAGGCAGGCGGGTC
CTGGCAGCAAAAAGGAAAGCTCGCTTGCAGATCGAGGCCTCCGGGCGCAG
CAAGCGTCGGCAGCCCAAGACGCACCGCTCGTTTTGGTCGTCGGACGAGG
TAGCCGATTTGAAACAGGCAGTGTTGCATGATGGAATGAAAGGGCGATGG
GCGGATATTCTAAACAGTCCCAAGTACCTTCATTTGGACTTTAAGCTACG
GACGAGTGTGGATCTGAAGGATAAATGGCGGGGTTTGGAGCGCAAGGCGG
CGGCCAAGGGAGTGACGGTGGAGGAGGTGAATTAA
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Coding sequence (CDS) from alignment at chr1:1123357..1125291-

>NO01G04200.1 ID=NO01G04200.1|Name=NO01G04200.1|organism=Nannochloropsis oceanica|type=CDS|length=1935bp|location=Sequence derived from alignment at chr1:1123357..1125291- (Nannochloropsis oceanica)
ATGGCTCCCGCTGTCGATAATCCCTCAATCTCTGCTGCGGCGGCAGAACT
CCTGTGCATGATGGACTGGGCTGCCCACTTCCGCGACCACAGCACTCTCC
AAGCCCTTGCTAGAACATCGAACGACGCAGGTCTAAGCATTCCATCCAAT
TCTGTGCTGTTTAAAAGACTGCTGCTGGCAGGATTAGACGAAGCCTCAGG
AATTGCAAAGGTCGAGGAGGACTTCGAATCGGTGCTCTCGATACTCACGG
AGGCCGAGGGCTGGCTCCTTCGCGGCGTTCCGGGCCACGATTTGTTCGAC
CTCAAGCTCAAGATTCGACGCCAACTCGTGCTCTCCCCTCTACGCAACTC
CTTGCCCGACGACTTGGACTCGGTTTCCATGCGGTCATTGGCGACTCTGA
ACAATGAGCGGTATTGGTATCTGCTGGATAAGATATTTCCTTTGGAGACG
TCGCGTCGGGCTTCTCTTTCGGGTAGCGATGCCGCTGGCTGGGTCAGCCC
CGGTGCGCGTCACGAGGGGGAATATCGCAAGGTTGTAGAGATAAAGGAGC
GGAAGCAGTTGTTGGACGTGATGAGGGGGGATGGGAGTCCGCTAGACGGA
GACAACATGGATATGAACAAGGTGTTGTACCTGCTCAAGACTTACTCGAA
GGAGGGATTTCTTGCGGAGGTAGGGCAGTTTACGCGACAGGTTGAATCAA
AGCTCTTGCCGGATCCTGAACCTTTCAAAGAAGGAGGTGAGGTTTGGAAT
GGTGGAGGAGGGAGGAGAGGAAGAGAGGTGGCGTCGTTGTTGGGGAGAGA
CCCACGCACTGTCCTGTCAGCTGCTGGTCGGGCCCGAGAGCGGTTGCAGA
ATTGGAGTCGGGCGAGTGGATTGGTGAGCACAGAGGTAGAGAGGGAAGCG
ACAGAGAGTAAGATACGCAAGCATGTGCATGAATTGCGAAATGCTGCTAC
AGCAGGGGGCGTATCGGGAGGGAGGGGATCGGGTAGACGACGTGCAGAGC
AAGAGCAGGAGGGAGAGGAAGAGGGAGAGGAGCAAGAAGAGAGTGAGACA
GACGCCCAGCGCTTGGCTACCAATCTACGCTCAAGCACCAGAATGCTGCA
AAACGGTCTTCGGGAGCGAGGCCTGTTGAATGTGCGGGGCGTTGTGGGAG
GTGGGGGGGGGGGCGGGGGAGGAGGAAGGGCAGGAGGAGTAGGAGGGAGA
ACGACAAACAAGAAGAAGCGTCTGAATGACCCGACGCGAAAGGGGCGCTT
GATCACGTTTGAGGACAGTCAGTATGCGGGATCAGAGAGCAGCACTGGCG
GGGAGGAAGAGGAGGACAATGTGTCTGTGTCGGAATCTCGGCGACAGGCA
GCGGCCCGGCAACGGCGCACGCAGACAGCAGCAGCAGCAGCAGCAGCCGC
TGCTCGTTTGGCGGACCGCCGCAAAAAGAGTCAGAGGGGCAAGCCGGCTG
CTCTACCCCCTATGTCGGGCGAGCGGTGCCGGGACGTTGGAGAGGAAGCA
GAGGAGGAAGAGATGGCGGGAGAAAGAGACGAGGAGCAGGAGGAGATTCG
TAGCACAACTGAGAGTAGCAGCAGCAGCAGTGGCAGTGAGGAAGAGGACG
AAGAGCGGGAGCGTATCAGAGCACTAAAGCGGGGTGGAGGCAGGCGGGTC
CTGGCAGCAAAAAGGAAAGCTCGCTTGCAGATCGAGGCCTCCGGGCGCAG
CAAGCGTCGGCAGCCCAAGACGCACCGCTCGTTTTGGTCGTCGGACGAGG
TAGCCGATTTGAAACAGGCAGTGTTGCATGATGGAATGAAAGGGCGATGG
GCGGATATTCTAAACAGTCCCAAGTACCTTCATTTGGACTTTAAGCTACG
GACGAGTGTGGATCTGAAGGATAAATGGCGGGGTTTGGAGCGCAAGGCGG
CGGCCAAGGGAGTGACGGTGGAGGAGGTGAATTAA
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Synonyms
Publications