NO01G04180.2, NO01G04180.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G04180.2
Unique NameNO01G04180.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length935
Alignment locationchr1:1118726..1120050 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1118726..1120050 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO01G04180.2 vs.
Match: EWM29353.1 (23s rrna methyltransferase j [Nannochloropsis gaditana])

HSP 1 Score: 87.0 bits (214), Expect = 6.000e-14
Identity = 59/101 (58.42%), Postives = 71/101 (70.30%), Query Frame = 0
Query:   60 TSRLLAAP----TGDDEEDDDENDGYG---STSSRGSAVSSSSVAIFSSTFKGKHRRALRSLAGRKKADKSLFTMQQSETPPSDRFRIEVETALRAHELVS 154
            TSR LAA      G + +D +E+DG     STS   S  +S S+      FKGKHRRALR+LAGRKKA+KSLFTMQQSE+PP + F IEVE+ALRAHELV+
Sbjct:   56 TSRALAALGSNFDGSEIDDGEESDGEIDEISTSMSTSEPTSESLP----AFKGKHRRALRALAGRKKANKSLFTMQQSESPPIEGFCIEVESALRAHELVN 152          
The following BLAST results are available for this feature:
BLAST of NO01G04180.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29353.16.000e-1458.4223s rrna methyltransferase j [Nannochloropsis gadi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G04180NO01G04180Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G04180.2NO01G04180.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G04180.2.cds1NO01G04180.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G04180.2.cds2NO01G04180.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G04180.2.cds3NO01G04180.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G04180.2 ID=NO01G04180.2|Name=NO01G04180.2|organism=Nannochloropsis oceanica|type=mRNA|length=935bp
CCACAGGCTCCCGTCGAGTTCCGTTGGTTCCCCTTCCAGCGACTACATGA
TGAAGTCCAGCGGGAGGCTCCTAATGCTTTTTCTCTGCTTCATGCTTCAA
TTGGCCAGCTTGGTGGCCTTCGCGGGACCCGCCGCGCCAGCTGCGGCTGT
GTCCCGGTCAAGACGAGGAGGCTTCATGCAGGTGGCGTCATCAGGGATCG
CGCGATTTGGTTCAATCTTGACTACCTCCCGACTCTTGGCTGCCCCGACC
GGGGACGATGAGGAAGATGACGATGAGAATGACGGCTACGGTAGTACCAG
CAGCCGCGGCAGTGCGGTCTCTTCCTCCTCGGTTGCTATATTTTCCTCGA
CTTTCAAGGGCAAACATCGGCGCGCCCTGCGGTCACTGGCAGGGCGCAAA
AAGGCGGACAAATCCCTTTTCACCATGCAGCAGTCTGAAACTCCGCCATC
CGATCGGTTTCGCATCGAGGTCGAGACCGCATTACGAGCCCACGAGCTGG
TTAGTGCGATTGGTTGGATGGGAAAGGGAGGCACGGGGAACCTCTCCGGA
CTAGGCTGAGGGAGAAAATAAAAATATCATGGTAGTCCTACTTAGATATT
GCGCGTGCAGACGTCAGTGGCGTTGTGTAAGCGTCTCTCATTTCACATTT
TCTGTTTTTTGTCTATCGCTCCTCCGCCTGTAGGTAAATATCCGCGTGCT
CTTCGCTGCTAAAAAGAAAGAGGCAAAAACTGTCGGGGAGGCTATGGCAG
AGGCCGTCAGCGCGGAGTTGGTGCAAGTGATTGGTCATACCTACCTTCTC
TTTAAACCAGGGAACCCTCCAAGGATAGACATGGTAAGGCTTACCACGGA
GGCTCCTCCTGAGTAGTTGGGTCCATAGCAGGGAGGATAGGAGACTTCGA
ATATGCCAAAAAAGTAAATTAAAGTATTATGCGCA
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protein sequence of NO01G04180.2

>NO01G04180.2-protein ID=NO01G04180.2-protein|Name=NO01G04180.2|organism=Nannochloropsis oceanica|type=polypeptide|length=171bp
MMKSSGRLLMLFLCFMLQLASLVAFAGPAAPAAAVSRSRRGGFMQVASSG
IARFGSILTTSRLLAAPTGDDEEDDDENDGYGSTSSRGSAVSSSSVAIFS
STFKGKHRRALRSLAGRKKADKSLFTMQQSETPPSDRFRIEVETALRAHE
LVSAIGWMGKGGTGNLSGLG*
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mRNA from alignment at chr1:1118726..1120050+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G04180.2 ID=NO01G04180.2|Name=NO01G04180.2|organism=Nannochloropsis oceanica|type=mRNA|length=1325bp|location=Sequence derived from alignment at chr1:1118726..1120050+ (Nannochloropsis oceanica)
CCACAGGCTCCCGTCGAGTTCCGTTGGTTCCCCTTCCAGCGACTACATGA TGAAGTCCAGCGGGAGGCTCCTAATGCTTTTTCTCTGCTTCATGCTTCAA TTGGCCAGCTTGGTGGCCTTCGCGGGACCCGCCGCGCCAGCTGCGGCTGT GTCCCGGTCAAGACGAGGAGGCTTCATGCAGGTGGCGTCATCAGGTATGT GTGCATGGGTGGGTGGCATGTGTGATAGCGCAAAGATCGAGTTTATCGTG AGGTAAGCCACTTACTCAGATGCTTGTTATGTTTACAAACTTAGGGATCG CGCGATTTGGTTCAATCTTGACTACCTCCCGACTCTTGGCTGCCCCGACC GGGGACGATGAGGAAGATGACGATGAGAATGACGGCTACGGTAGTACCAG CAGCCGCGGCAGTGCGGTCTCTTCCTCCTCGGTTGCTATATTTTCCTCGA CTTTCAAGGGCAAACATCGGCGCGCCCTGCGGTCACTGGCAGGTACGGTT GTTTATGGATGCTACTACTACCAGAATTTCTTCTCTGTATGCTTGCTTAT TTCTCTACTCGCTCGTTTAGAATGACTAACGTACCCTTTTGTTTTAATTC CTCTTAAGCGCATGTCCTATCACTGGAATGCTTTCATCCATAAATGAATC GGCCGTGTTCTCATCTGTCTGCTCGATCCTTGCGGAAGTACCGAGCCTGC AGATCGTGCACTCACCCGCCTATCCCCTCTCGCCTTGCCCCTCTCACTGT CTCACATTATTCGTGCGCTATCCATAACGCAGGGCGCAAAAAGGCGGACA AATCCCTTTTCACCATGCAGCAGTCTGAAACTCCGCCATCCGATCGGTTT CGCATCGAGGTCGAGACCGCATTACGAGCCCACGAGCTGGTTAGTGCGAT TGGTTGGATGGGAAAGGGAGGCACGGGGAACCTCTCCGGACTAGGCTGAG GGAGAAAATAAAAATATCATGGTAGTCCTACTTAGATATTGCGCGTGCAG ACGTCAGTGGCGTTGTGTAAGCGTCTCTCATTTCACATTTTCTGTTTTTT GTCTATCGCTCCTCCGCCTGTAGGTAAATATCCGCGTGCTCTTCGCTGCT AAAAAGAAAGAGGCAAAAACTGTCGGGGAGGCTATGGCAGAGGCCGTCAG CGCGGAGTTGGTGCAAGTGATTGGTCATACCTACCTTCTCTTTAAACCAG GGAACCCTCCAAGGATAGACATGGTAAGGCTTACCACGGAGGCTCCTCCT GAGTAGTTGGGTCCATAGCAGGGAGGATAGGAGACTTCGAATATGCCAAA AAAGTAAATTAAAGTATTATGCGCA
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Coding sequence (CDS) from alignment at chr1:1118726..1120050+

>NO01G04180.2 ID=NO01G04180.2|Name=NO01G04180.2|organism=Nannochloropsis oceanica|type=CDS|length=513bp|location=Sequence derived from alignment at chr1:1118726..1120050+ (Nannochloropsis oceanica)
ATGATGAAGTCCAGCGGGAGGCTCCTAATGCTTTTTCTCTGCTTCATGCT
TCAATTGGCCAGCTTGGTGGCCTTCGCGGGACCCGCCGCGCCAGCTGCGG
CTGTGTCCCGGTCAAGACGAGGAGGCTTCATGCAGGTGGCGTCATCAGGG
ATCGCGCGATTTGGTTCAATCTTGACTACCTCCCGACTCTTGGCTGCCCC
GACCGGGGACGATGAGGAAGATGACGATGAGAATGACGGCTACGGTAGTA
CCAGCAGCCGCGGCAGTGCGGTCTCTTCCTCCTCGGTTGCTATATTTTCC
TCGACTTTCAAGGGCAAACATCGGCGCGCCCTGCGGTCACTGGCAGGGCG
CAAAAAGGCGGACAAATCCCTTTTCACCATGCAGCAGTCTGAAACTCCGC
CATCCGATCGGTTTCGCATCGAGGTCGAGACCGCATTACGAGCCCACGAG
CTGGTTAGTGCGATTGGTTGGATGGGAAAGGGAGGCACGGGGAACCTCTC
CGGACTAGGCTGA
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Synonyms
Publications