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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:1112495..1114480 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G04160.1 vs.
Match: EWM29356.1 (aldose 1-epimerase [Nannochloropsis gaditana]) HSP 1 Score: 439.1 bits (1128), Expect = 1.500e-119 Identity = 226/388 (58.25%), Postives = 276/388 (71.13%), Query Frame = 0
Query: 24 AVHSFEVSNGSLSISMMDYGATLISVRAPDRDGKLDNVTLFSNKFGK---NEMYMGVTVGRVANRVANGMFKLDGKDYTLATNNGPNSLHGGIQGFDKRMWEGKTFKNDKAVGVIFTLHSPDGDEGYPGFVTVQAIYSILIDQDVLEMDFRAETDAATPINLSNHAYWNLGGEDAGGKHIRKAHDHFLHVNASHILEVGPNQIPTGVLQPVEGTPFDLRDGSGSQLGNRIPLIDGGGKPGFDHCYVIEEYDPAASRRVTSTKGGKKEKGENVDKRKQAEAQGEMMEEEEEREEGKS-IRNQARYMASLTEKESGRVMRVYGTQPGLQIYTANWLSEEKGEQHGAVCLETEFFPNAINDPTEGAAESVVLRPGQVYRHFTYHVFQTIPR 408
+VH ++ SNG + +S++D+GATL SV+ PDRDGK++ VTL + MY G TVGRVANRVANG F LDGK YTLA NNGPN LHGG +GFD+++W+G F + AVGV FTL SPDG+EGYPG V +Q YS+L +DVLEMD +AETDAATP+ LSNHAYWNL G K +DH L V AS ILEVGP+QIPTGV QPV TPFDLR G LG+RI IDGGGK GFDHC+V++ YD AASR EK E+V + AE +E +E+ +S IR +AR+MA+L + +SGR M V GTQPGLQ+YTANWL EE G+QH AVCLETEFFPNA+NDP G+ + V+LRPGQ+YRHFT H F +P+
Sbjct: 89 SVHRYDCSNGRVHVSLLDFGATLFSVQVPDRDGKIEEVTLNVTSLDQLLHKNMYFGSTVGRVANRVANGRFTLDGKVYTLAKNNGPNHLHGGKEGFDQKIWKGYPFTSASAVGVCFTLDSPDGEEGYPGNVAIQVTYSLLAGEDVLEMDVKAETDAATPLALSNHAYWNLSGNLK-----NKIYDHKLRVAASSILEVGPHQIPTGVFQPVLQTPFDLRAEEGISLGDRIQQIDGGGKAGFDHCFVVDGYDRAASR----------EKSEHV---RDAE------DEVQEKGSPESWIRARARFMATLVDPKSGRAMDVRGTQPGLQVYTANWLDEEDGQQHAAVCLETEFFPNAVNDPKVGSVDDVILRPGQIYRHFTSHRFYNLPK 452
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G04160.1 ID=NO01G04160.1|Name=NO01G04160.1|organism=Nannochloropsis oceanica|type=mRNA|length=1370bp CAACAGACCCCCAACGCCCGTCGCATATCATGTCTCAGTCTACCCCTCCC TACGCCATTAAACGGATCTCAGCTGGGCTGTCTGGTCCCCCTGACACGGC CGTGCATAGTTTTGAGGTGTCGAACGGCTCTCTCAGCATCTCGATGATGG ACTACGGCGCGACACTCATCTCCGTTCGAGCCCCGGACCGGGACGGCAAA TTAGACAATGTTACGCTTTTCTCAAATAAATTTGGAAAGAACGAAATGTA CATGGGTGTAACGGTTGGGCGCGTGGCCAATCGGGTGGCAAACGGCATGT TTAAGCTGGACGGCAAGGACTACACACTGGCGACCAACAACGGGCCCAAC AGCCTCCATGGCGGCATTCAAGGCTTTGACAAACGAATGTGGGAAGGCAA GACATTTAAGAATGATAAGGCTGTGGGCGTCATCTTCACGTTGCACAGCC CCGACGGCGACGAGGGCTATCCTGGCTTCGTGACGGTGCAGGCAATCTAC AGCATTCTGATCGACCAGGATGTCCTCGAGATGGATTTTCGGGCCGAAAC AGACGCGGCTACCCCCATAAACTTGAGTAACCACGCGTACTGGAACCTCG GTGGGGAAGATGCAGGTGGTAAACACATCCGGAAGGCCCATGACCACTTC CTCCACGTAAACGCTTCACACATCCTGGAAGTAGGACCTAACCAGATCCC GACTGGCGTGCTACAGCCCGTTGAGGGGACGCCCTTCGACCTCCGTGATG GCTCAGGATCCCAACTGGGGAATCGCATTCCTCTGATTGATGGAGGGGGC AAGCCCGGATTCGATCATTGTTACGTGATTGAGGAGTATGACCCCGCGGC GTCACGGAGAGTGACGTCAACGAAGGGAGGCAAGAAGGAGAAAGGGGAAA ACGTGGACAAGAGGAAACAAGCTGAAGCGCAGGGGGAGATGATGGAGGAG GAGGAGGAGAGGGAGGAAGGGAAGTCGATTCGGAATCAGGCTCGGTATAT GGCTAGTCTTACGGAAAAGGAAAGTGGGAGGGTGATGCGTGTGTATGGGA CGCAGCCGGGCTTGCAGATCTATACGGCAAATTGGCTAAGTGAGGAGAAG GGAGAGCAGCACGGGGCGGTTTGTCTTGAGACAGAGTTTTTCCCGAATGC GATAAATGATCCTACGGAGGGGGCGGCGGAGAGCGTGGTTTTGCGGCCTG GGCAGGTGTACCGGCATTTTACCTACCATGTGTTTCAAACAATCCCGAGA GAACGAGAGTGATAGTGAGGACGGCACGAACGAGGTGCTGGGATGTACAG TGTACAAGGGGGGGAAAAGGATGGAGCATAACAAGCTACGGAAAGCGAAA TTTGGTAGACAGATAGATGA back to topprotein sequence of NO01G04160.1 >NO01G04160.1-protein ID=NO01G04160.1-protein|Name=NO01G04160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=411bp MSQSTPPYAIKRISAGLSGPPDTAVHSFEVSNGSLSISMMDYGATLISVR APDRDGKLDNVTLFSNKFGKNEMYMGVTVGRVANRVANGMFKLDGKDYTL ATNNGPNSLHGGIQGFDKRMWEGKTFKNDKAVGVIFTLHSPDGDEGYPGF VTVQAIYSILIDQDVLEMDFRAETDAATPINLSNHAYWNLGGEDAGGKHI RKAHDHFLHVNASHILEVGPNQIPTGVLQPVEGTPFDLRDGSGSQLGNRI PLIDGGGKPGFDHCYVIEEYDPAASRRVTSTKGGKKEKGENVDKRKQAEA QGEMMEEEEEREEGKSIRNQARYMASLTEKESGRVMRVYGTQPGLQIYTA NWLSEEKGEQHGAVCLETEFFPNAINDPTEGAAESVVLRPGQVYRHFTYH VFQTIPRERE* back to topmRNA from alignment at chr1:1112495..1114480+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G04160.1 ID=NO01G04160.1|Name=NO01G04160.1|organism=Nannochloropsis oceanica|type=mRNA|length=1986bp|location=Sequence derived from alignment at chr1:1112495..1114480+ (Nannochloropsis oceanica) CAACAGACCCCCAACGCCCGTCGCATATCATGTCTCAGTCTACCCCTCCC
TACGCCATTAAACGGATCTCAGCTGGGCTGTCTGGTCCCCCTGACACGGC
CGTGCATAGTTTTGAGGTGTCGAACGGCTCTCTCAGCATCTCGATGATGG
ACTACGGCGCGACACTCATCTCCGTTCGAGCCCCGGACCGGGACGGCAAA
TTAGACAATGTTACGCTTTTCTCAAATAAATTTGGAAAGAACGAAATGTA
CATGGGTGTAACGGTTGGGCGCGTGGCCAATCGGGTGGCAAACGGCATGT
TTAAGCTGGACGGCAAGGTACGTGGCTTGTATAGGAACGGGAAAAAGGTG
TGTTGGGAGGGCCGGGAGAAACGTTTCCTACACCGCAAAAGGTCATGGAG
CCTCACGGATGAAAACTCATGGTATTGCTCATAAGTCTCTCCGAAATTTC
GGTGCCTCGTACCTTGTCTCGTCGTTCTTAGCACATTTGGCCTCAACCAT
TTGTCCCCCCACCCTTGACCACAAACCTCTCCTTCTCTTAAATTATAGGA
CTACACACTGGCGACCAACAACGGGCCCAACAGCCTCCATGGCGGCATTC
AAGGCTTTGACAAACGAATGTGGGAAGGCAAGACATTTAAGAATGATAAG
GCTGTGGGCGTCATCTTCACGTTGCACAGCCCCGACGGCGACGAGGGCTA
TCCTGGCTTCGTGACGGTGCAGGTGCGCGGGTTGTGTGGTGCGCATTTCA
TTGAGTGTGGCGGTACGCGAGTGTTTGCTCATGCAGAGCTTATGTAGGAG
GGGAGGAGTCGGGATAAATGTAGCAGCTGGTATTTCTCGGTCAGACCTCT
TTTTCATTCTTCTTGATTGCTAATACCCATTCCCCTCCTTCTCAACATAA
TCAGGCAATCTACAGCATTCTGATCGACCAGGATGTCCTCGAGATGGATT
TTCGGGCCGAAACAGACGCGGCTACCCCCATAAACTTGAGTAACCACGCG
TACTGGAACCTCGGTGGGGAAGATGCAGGTGGTAAACACATCCGGAAGGT
ACAGTCGGACCCGCGCCCGCAATGACGGCATGGCTTTTGAAAGCGTATGG
GCACGCATGCGTGGTCTCACTTGTACAAGTGTCGGCCATTTTATTGCCGT
CTCTACTGCTCGTATCTCCTCGCCCGCTCTATCCACCCTCTTGTTCTTTC
CTCAACCAGACTCTCCCTCCATCCCTCCTTTCCCTCCCCCCTCCCCCACA
GGCCCATGACCACTTCCTCCACGTAAACGCTTCACACATCCTGGAAGTAG
GACCTAACCAGATCCCGACTGGCGTGCTACAGCCCGTTGAGGGGACGCCC
TTCGACCTCCGTGATGGCTCAGGATCCCAACTGGGGAATCGCATTCCTCT
GATTGATGGAGGGGGCAAGCCCGGATTCGATCATTGTTACGTGATTGAGG
AGTATGACCCCGCGGCGTCACGGAGAGTGACGTCAACGAAGGGAGGCAAG
AAGGAGAAAGGGGAAAACGTGGACAAGAGGAAACAAGCTGAAGCGCAGGG
GGAGATGATGGAGGAGGAGGAGGAGAGGGAGGAAGGGAAGTCGATTCGGA
ATCAGGCTCGGTATATGGCTAGTCTTACGGAAAAGGAAAGTGGGAGGGTG
ATGCGTGTGTATGGGACGCAGCCGGGCTTGCAGATCTATACGGCAAATTG
GCTAAGTGAGGAGAAGGGAGAGCAGCACGGGGCGGTTTGTCTTGAGACAG
AGTTTTTCCCGAATGCGATAAATGATCCTACGGAGGGGGCGGCGGAGAGC
GTGGTTTTGCGGCCTGGGCAGGTGTACCGGCATTTTACCTACCATGTGTT
TCAAACAATCCCGAGAGAACGAGAGTGATAGTGAGGACGGCACGAACGAG
GTGCTGGGATGTACAGTGTACAAGGGGGGGAAAAGGATGGAGCATAACAA
GCTACGGAAAGCGAAATTTGGTAGACAGATAGATGA back to topCoding sequence (CDS) from alignment at chr1:1112495..1114480+ >NO01G04160.1 ID=NO01G04160.1|Name=NO01G04160.1|organism=Nannochloropsis oceanica|type=CDS|length=1233bp|location=Sequence derived from alignment at chr1:1112495..1114480+ (Nannochloropsis oceanica) ATGTCTCAGTCTACCCCTCCCTACGCCATTAAACGGATCTCAGCTGGGCT GTCTGGTCCCCCTGACACGGCCGTGCATAGTTTTGAGGTGTCGAACGGCT CTCTCAGCATCTCGATGATGGACTACGGCGCGACACTCATCTCCGTTCGA GCCCCGGACCGGGACGGCAAATTAGACAATGTTACGCTTTTCTCAAATAA ATTTGGAAAGAACGAAATGTACATGGGTGTAACGGTTGGGCGCGTGGCCA ATCGGGTGGCAAACGGCATGTTTAAGCTGGACGGCAAGGACTACACACTG GCGACCAACAACGGGCCCAACAGCCTCCATGGCGGCATTCAAGGCTTTGA CAAACGAATGTGGGAAGGCAAGACATTTAAGAATGATAAGGCTGTGGGCG TCATCTTCACGTTGCACAGCCCCGACGGCGACGAGGGCTATCCTGGCTTC GTGACGGTGCAGGCAATCTACAGCATTCTGATCGACCAGGATGTCCTCGA GATGGATTTTCGGGCCGAAACAGACGCGGCTACCCCCATAAACTTGAGTA ACCACGCGTACTGGAACCTCGGTGGGGAAGATGCAGGTGGTAAACACATC CGGAAGGCCCATGACCACTTCCTCCACGTAAACGCTTCACACATCCTGGA AGTAGGACCTAACCAGATCCCGACTGGCGTGCTACAGCCCGTTGAGGGGA CGCCCTTCGACCTCCGTGATGGCTCAGGATCCCAACTGGGGAATCGCATT CCTCTGATTGATGGAGGGGGCAAGCCCGGATTCGATCATTGTTACGTGAT TGAGGAGTATGACCCCGCGGCGTCACGGAGAGTGACGTCAACGAAGGGAG GCAAGAAGGAGAAAGGGGAAAACGTGGACAAGAGGAAACAAGCTGAAGCG CAGGGGGAGATGATGGAGGAGGAGGAGGAGAGGGAGGAAGGGAAGTCGAT TCGGAATCAGGCTCGGTATATGGCTAGTCTTACGGAAAAGGAAAGTGGGA GGGTGATGCGTGTGTATGGGACGCAGCCGGGCTTGCAGATCTATACGGCA AATTGGCTAAGTGAGGAGAAGGGAGAGCAGCACGGGGCGGTTTGTCTTGA GACAGAGTTTTTCCCGAATGCGATAAATGATCCTACGGAGGGGGCGGCGG AGAGCGTGGTTTTGCGGCCTGGGCAGGTGTACCGGCATTTTACCTACCAT GTGTTTCAAACAATCCCGAGAGAACGAGAGTGA back to top
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