NO01G04160.1, NO01G04160.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G04160.1
Unique NameNO01G04160.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1370
Alignment locationchr1:1112495..1114480 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1112495..1114480 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO01G04160.1 vs.
Match: EWM29356.1 (aldose 1-epimerase [Nannochloropsis gaditana])

HSP 1 Score: 439.1 bits (1128), Expect = 1.500e-119
Identity = 226/388 (58.25%), Postives = 276/388 (71.13%), Query Frame = 0
Query:   24 AVHSFEVSNGSLSISMMDYGATLISVRAPDRDGKLDNVTLFSNKFGK---NEMYMGVTVGRVANRVANGMFKLDGKDYTLATNNGPNSLHGGIQGFDKRMWEGKTFKNDKAVGVIFTLHSPDGDEGYPGFVTVQAIYSILIDQDVLEMDFRAETDAATPINLSNHAYWNLGGEDAGGKHIRKAHDHFLHVNASHILEVGPNQIPTGVLQPVEGTPFDLRDGSGSQLGNRIPLIDGGGKPGFDHCYVIEEYDPAASRRVTSTKGGKKEKGENVDKRKQAEAQGEMMEEEEEREEGKS-IRNQARYMASLTEKESGRVMRVYGTQPGLQIYTANWLSEEKGEQHGAVCLETEFFPNAINDPTEGAAESVVLRPGQVYRHFTYHVFQTIPR 408
            +VH ++ SNG + +S++D+GATL SV+ PDRDGK++ VTL      +     MY G TVGRVANRVANG F LDGK YTLA NNGPN LHGG +GFD+++W+G  F +  AVGV FTL SPDG+EGYPG V +Q  YS+L  +DVLEMD +AETDAATP+ LSNHAYWNL G         K +DH L V AS ILEVGP+QIPTGV QPV  TPFDLR   G  LG+RI  IDGGGK GFDHC+V++ YD AASR          EK E+V   + AE      +E +E+   +S IR +AR+MA+L + +SGR M V GTQPGLQ+YTANWL EE G+QH AVCLETEFFPNA+NDP  G+ + V+LRPGQ+YRHFT H F  +P+
Sbjct:   89 SVHRYDCSNGRVHVSLLDFGATLFSVQVPDRDGKIEEVTLNVTSLDQLLHKNMYFGSTVGRVANRVANGRFTLDGKVYTLAKNNGPNHLHGGKEGFDQKIWKGYPFTSASAVGVCFTLDSPDGEEGYPGNVAIQVTYSLLAGEDVLEMDVKAETDAATPLALSNHAYWNLSGNLK-----NKIYDHKLRVAASSILEVGPHQIPTGVFQPVLQTPFDLRAEEGISLGDRIQQIDGGGKAGFDHCFVVDGYDRAASR----------EKSEHV---RDAE------DEVQEKGSPESWIRARARFMATLVDPKSGRAMDVRGTQPGLQVYTANWLDEEDGQQHAAVCLETEFFPNAVNDPKVGSVDDVILRPGQIYRHFTSHRFYNLPK 452          
The following BLAST results are available for this feature:
BLAST of NO01G04160.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29356.11.500e-11958.25aldose 1-epimerase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G04160NO01G04160Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G04160.1NO01G04160.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G04160.1.cds1NO01G04160.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G04160.1.cds2NO01G04160.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G04160.1.cds3NO01G04160.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G04160.1.cds4NO01G04160.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G04160.1 ID=NO01G04160.1|Name=NO01G04160.1|organism=Nannochloropsis oceanica|type=mRNA|length=1370bp
CAACAGACCCCCAACGCCCGTCGCATATCATGTCTCAGTCTACCCCTCCC
TACGCCATTAAACGGATCTCAGCTGGGCTGTCTGGTCCCCCTGACACGGC
CGTGCATAGTTTTGAGGTGTCGAACGGCTCTCTCAGCATCTCGATGATGG
ACTACGGCGCGACACTCATCTCCGTTCGAGCCCCGGACCGGGACGGCAAA
TTAGACAATGTTACGCTTTTCTCAAATAAATTTGGAAAGAACGAAATGTA
CATGGGTGTAACGGTTGGGCGCGTGGCCAATCGGGTGGCAAACGGCATGT
TTAAGCTGGACGGCAAGGACTACACACTGGCGACCAACAACGGGCCCAAC
AGCCTCCATGGCGGCATTCAAGGCTTTGACAAACGAATGTGGGAAGGCAA
GACATTTAAGAATGATAAGGCTGTGGGCGTCATCTTCACGTTGCACAGCC
CCGACGGCGACGAGGGCTATCCTGGCTTCGTGACGGTGCAGGCAATCTAC
AGCATTCTGATCGACCAGGATGTCCTCGAGATGGATTTTCGGGCCGAAAC
AGACGCGGCTACCCCCATAAACTTGAGTAACCACGCGTACTGGAACCTCG
GTGGGGAAGATGCAGGTGGTAAACACATCCGGAAGGCCCATGACCACTTC
CTCCACGTAAACGCTTCACACATCCTGGAAGTAGGACCTAACCAGATCCC
GACTGGCGTGCTACAGCCCGTTGAGGGGACGCCCTTCGACCTCCGTGATG
GCTCAGGATCCCAACTGGGGAATCGCATTCCTCTGATTGATGGAGGGGGC
AAGCCCGGATTCGATCATTGTTACGTGATTGAGGAGTATGACCCCGCGGC
GTCACGGAGAGTGACGTCAACGAAGGGAGGCAAGAAGGAGAAAGGGGAAA
ACGTGGACAAGAGGAAACAAGCTGAAGCGCAGGGGGAGATGATGGAGGAG
GAGGAGGAGAGGGAGGAAGGGAAGTCGATTCGGAATCAGGCTCGGTATAT
GGCTAGTCTTACGGAAAAGGAAAGTGGGAGGGTGATGCGTGTGTATGGGA
CGCAGCCGGGCTTGCAGATCTATACGGCAAATTGGCTAAGTGAGGAGAAG
GGAGAGCAGCACGGGGCGGTTTGTCTTGAGACAGAGTTTTTCCCGAATGC
GATAAATGATCCTACGGAGGGGGCGGCGGAGAGCGTGGTTTTGCGGCCTG
GGCAGGTGTACCGGCATTTTACCTACCATGTGTTTCAAACAATCCCGAGA
GAACGAGAGTGATAGTGAGGACGGCACGAACGAGGTGCTGGGATGTACAG
TGTACAAGGGGGGGAAAAGGATGGAGCATAACAAGCTACGGAAAGCGAAA
TTTGGTAGACAGATAGATGA
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protein sequence of NO01G04160.1

>NO01G04160.1-protein ID=NO01G04160.1-protein|Name=NO01G04160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=411bp
MSQSTPPYAIKRISAGLSGPPDTAVHSFEVSNGSLSISMMDYGATLISVR
APDRDGKLDNVTLFSNKFGKNEMYMGVTVGRVANRVANGMFKLDGKDYTL
ATNNGPNSLHGGIQGFDKRMWEGKTFKNDKAVGVIFTLHSPDGDEGYPGF
VTVQAIYSILIDQDVLEMDFRAETDAATPINLSNHAYWNLGGEDAGGKHI
RKAHDHFLHVNASHILEVGPNQIPTGVLQPVEGTPFDLRDGSGSQLGNRI
PLIDGGGKPGFDHCYVIEEYDPAASRRVTSTKGGKKEKGENVDKRKQAEA
QGEMMEEEEEREEGKSIRNQARYMASLTEKESGRVMRVYGTQPGLQIYTA
NWLSEEKGEQHGAVCLETEFFPNAINDPTEGAAESVVLRPGQVYRHFTYH
VFQTIPRERE*
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mRNA from alignment at chr1:1112495..1114480+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G04160.1 ID=NO01G04160.1|Name=NO01G04160.1|organism=Nannochloropsis oceanica|type=mRNA|length=1986bp|location=Sequence derived from alignment at chr1:1112495..1114480+ (Nannochloropsis oceanica)
CAACAGACCCCCAACGCCCGTCGCATATCATGTCTCAGTCTACCCCTCCC TACGCCATTAAACGGATCTCAGCTGGGCTGTCTGGTCCCCCTGACACGGC CGTGCATAGTTTTGAGGTGTCGAACGGCTCTCTCAGCATCTCGATGATGG ACTACGGCGCGACACTCATCTCCGTTCGAGCCCCGGACCGGGACGGCAAA TTAGACAATGTTACGCTTTTCTCAAATAAATTTGGAAAGAACGAAATGTA CATGGGTGTAACGGTTGGGCGCGTGGCCAATCGGGTGGCAAACGGCATGT TTAAGCTGGACGGCAAGGTACGTGGCTTGTATAGGAACGGGAAAAAGGTG TGTTGGGAGGGCCGGGAGAAACGTTTCCTACACCGCAAAAGGTCATGGAG CCTCACGGATGAAAACTCATGGTATTGCTCATAAGTCTCTCCGAAATTTC GGTGCCTCGTACCTTGTCTCGTCGTTCTTAGCACATTTGGCCTCAACCAT TTGTCCCCCCACCCTTGACCACAAACCTCTCCTTCTCTTAAATTATAGGA CTACACACTGGCGACCAACAACGGGCCCAACAGCCTCCATGGCGGCATTC AAGGCTTTGACAAACGAATGTGGGAAGGCAAGACATTTAAGAATGATAAG GCTGTGGGCGTCATCTTCACGTTGCACAGCCCCGACGGCGACGAGGGCTA TCCTGGCTTCGTGACGGTGCAGGTGCGCGGGTTGTGTGGTGCGCATTTCA TTGAGTGTGGCGGTACGCGAGTGTTTGCTCATGCAGAGCTTATGTAGGAG GGGAGGAGTCGGGATAAATGTAGCAGCTGGTATTTCTCGGTCAGACCTCT TTTTCATTCTTCTTGATTGCTAATACCCATTCCCCTCCTTCTCAACATAA TCAGGCAATCTACAGCATTCTGATCGACCAGGATGTCCTCGAGATGGATT TTCGGGCCGAAACAGACGCGGCTACCCCCATAAACTTGAGTAACCACGCG TACTGGAACCTCGGTGGGGAAGATGCAGGTGGTAAACACATCCGGAAGGT ACAGTCGGACCCGCGCCCGCAATGACGGCATGGCTTTTGAAAGCGTATGG GCACGCATGCGTGGTCTCACTTGTACAAGTGTCGGCCATTTTATTGCCGT CTCTACTGCTCGTATCTCCTCGCCCGCTCTATCCACCCTCTTGTTCTTTC CTCAACCAGACTCTCCCTCCATCCCTCCTTTCCCTCCCCCCTCCCCCACA GGCCCATGACCACTTCCTCCACGTAAACGCTTCACACATCCTGGAAGTAG GACCTAACCAGATCCCGACTGGCGTGCTACAGCCCGTTGAGGGGACGCCC TTCGACCTCCGTGATGGCTCAGGATCCCAACTGGGGAATCGCATTCCTCT GATTGATGGAGGGGGCAAGCCCGGATTCGATCATTGTTACGTGATTGAGG AGTATGACCCCGCGGCGTCACGGAGAGTGACGTCAACGAAGGGAGGCAAG AAGGAGAAAGGGGAAAACGTGGACAAGAGGAAACAAGCTGAAGCGCAGGG GGAGATGATGGAGGAGGAGGAGGAGAGGGAGGAAGGGAAGTCGATTCGGA ATCAGGCTCGGTATATGGCTAGTCTTACGGAAAAGGAAAGTGGGAGGGTG ATGCGTGTGTATGGGACGCAGCCGGGCTTGCAGATCTATACGGCAAATTG GCTAAGTGAGGAGAAGGGAGAGCAGCACGGGGCGGTTTGTCTTGAGACAG AGTTTTTCCCGAATGCGATAAATGATCCTACGGAGGGGGCGGCGGAGAGC GTGGTTTTGCGGCCTGGGCAGGTGTACCGGCATTTTACCTACCATGTGTT TCAAACAATCCCGAGAGAACGAGAGTGATAGTGAGGACGGCACGAACGAG GTGCTGGGATGTACAGTGTACAAGGGGGGGAAAAGGATGGAGCATAACAA GCTACGGAAAGCGAAATTTGGTAGACAGATAGATGA
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Coding sequence (CDS) from alignment at chr1:1112495..1114480+

>NO01G04160.1 ID=NO01G04160.1|Name=NO01G04160.1|organism=Nannochloropsis oceanica|type=CDS|length=1233bp|location=Sequence derived from alignment at chr1:1112495..1114480+ (Nannochloropsis oceanica)
ATGTCTCAGTCTACCCCTCCCTACGCCATTAAACGGATCTCAGCTGGGCT
GTCTGGTCCCCCTGACACGGCCGTGCATAGTTTTGAGGTGTCGAACGGCT
CTCTCAGCATCTCGATGATGGACTACGGCGCGACACTCATCTCCGTTCGA
GCCCCGGACCGGGACGGCAAATTAGACAATGTTACGCTTTTCTCAAATAA
ATTTGGAAAGAACGAAATGTACATGGGTGTAACGGTTGGGCGCGTGGCCA
ATCGGGTGGCAAACGGCATGTTTAAGCTGGACGGCAAGGACTACACACTG
GCGACCAACAACGGGCCCAACAGCCTCCATGGCGGCATTCAAGGCTTTGA
CAAACGAATGTGGGAAGGCAAGACATTTAAGAATGATAAGGCTGTGGGCG
TCATCTTCACGTTGCACAGCCCCGACGGCGACGAGGGCTATCCTGGCTTC
GTGACGGTGCAGGCAATCTACAGCATTCTGATCGACCAGGATGTCCTCGA
GATGGATTTTCGGGCCGAAACAGACGCGGCTACCCCCATAAACTTGAGTA
ACCACGCGTACTGGAACCTCGGTGGGGAAGATGCAGGTGGTAAACACATC
CGGAAGGCCCATGACCACTTCCTCCACGTAAACGCTTCACACATCCTGGA
AGTAGGACCTAACCAGATCCCGACTGGCGTGCTACAGCCCGTTGAGGGGA
CGCCCTTCGACCTCCGTGATGGCTCAGGATCCCAACTGGGGAATCGCATT
CCTCTGATTGATGGAGGGGGCAAGCCCGGATTCGATCATTGTTACGTGAT
TGAGGAGTATGACCCCGCGGCGTCACGGAGAGTGACGTCAACGAAGGGAG
GCAAGAAGGAGAAAGGGGAAAACGTGGACAAGAGGAAACAAGCTGAAGCG
CAGGGGGAGATGATGGAGGAGGAGGAGGAGAGGGAGGAAGGGAAGTCGAT
TCGGAATCAGGCTCGGTATATGGCTAGTCTTACGGAAAAGGAAAGTGGGA
GGGTGATGCGTGTGTATGGGACGCAGCCGGGCTTGCAGATCTATACGGCA
AATTGGCTAAGTGAGGAGAAGGGAGAGCAGCACGGGGCGGTTTGTCTTGA
GACAGAGTTTTTCCCGAATGCGATAAATGATCCTACGGAGGGGGCGGCGG
AGAGCGTGGTTTTGCGGCCTGGGCAGGTGTACCGGCATTTTACCTACCAT
GTGTTTCAAACAATCCCGAGAGAACGAGAGTGA
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Synonyms
Publications