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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr1 | genome | chr1:1109305..1112081 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G04150.1 vs.
Match: XP_005854117.1 (H/ACA ribonucleoprotein complex subunit 4 [Nannochloropsis gaditana CCMP526]; EKU22238.1 H/ACA ribonucleoprotein complex subunit 4 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 844.7 bits (2181), Expect = 1.500e-241 Identity = 446/498 (89.56%), Postives = 462/498 (92.77%), Query Frame = 0
Query: 36 MGKKDKKAAASS-GDDESATGLPSTEFMIKPETATPKLDTSTWPLLLKNYDQLHVRTARYTPIPMGSSPLKRPLKEYLRYGVINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKAQQGAGKEYVGVVRLHGAIEGHGKLMRAVETLTGALFQRPPLIAAVKRQLRIRTIYESKLVEYDEKRHLGVFWVSCEAGTYIRTLCVHLGLLVGTGGHMQELRRVRSGVLTENDHLMTMHDVLDAQYSYDTYKDETYLRRAVLPLEILFANTKRVVVKDSAVNAICYGARLMIPGLLRFADGIEVNDEVVMVTTKGEAIAVGIAQMTTAVMATCDHGMVAKIKRVVMERDTYPRRWGLGPVATKKKGLMKEGKLDKHGRPNADTPKEYLEAFEGKGGPAAAAGAGAGGGEVVKKEKKKEKKEKKEVEDVAISVADGSGGEENGEGKKKKKKDKKEKKRPAEEVPSSPEAAEEKKKKKKKSKGE 533
MGKKDKKAAA++ G+ +ATGLPSTEFMIKPETATPKLDTSTWPLLLKNYDQLHVRTARYTPIPMGSSPLKRPLKEYLRYGVINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKAQQGAGKEYVGVVRLHGAIEG KL+RAVETLTGALFQRPPLIAAVKRQLRIRTIYESKL+EYDEKRHLGVFWVSCEAGTYIRTLCVHLGLLVGTGGHMQELRRVRSGVLTENDHLMTMHDVLDAQY+YDTYKDE+YLRRAVLPLEILFANTKRVVVKDSAVNAICYGARLMIPGLLRFADGIEVNDEVVMVTTKGEAIAVGIAQMTTAVMATCDHGMVAKIKRVVMERDTYPRRWGLGPVATKKKGLMKEGKLDKHGRPNA+TP++YLEAFEGK GPAA +GAG KE KKEKK KKE A + + G+E G+ KKKK KKEKKRPAE SSPEAA EKKKKKKKSKGE
Sbjct: 1 MGKKDKKAAAAANGEAAAATGLPSTEFMIKPETATPKLDTSTWPLLLKNYDQLHVRTARYTPIPMGSSPLKRPLKEYLRYGVINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKAQQGAGKEYVGVVRLHGAIEGESKLVRAVETLTGALFQRPPLIAAVKRQLRIRTIYESKLLEYDEKRHLGVFWVSCEAGTYIRTLCVHLGLLVGTGGHMQELRRVRSGVLTENDHLMTMHDVLDAQYAYDTYKDESYLRRAVLPLEILFANTKRVVVKDSAVNAICYGARLMIPGLLRFADGIEVNDEVVMVTTKGEAIAVGIAQMTTAVMATCDHGMVAKIKRVVMERDTYPRRWGLGPVATKKKGLMKEGKLDKHGRPNAETPQDYLEAFEGKNGPAAQSGAGERVESGEAKEVKKEKKSKKEKAVAAEEMVAATSGDEGNGGEAKKKKKKKEKKRPAEGSASSPEAA-EKKKKKKKSKGE 497
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G04150.1 ID=NO01G04150.1|Name=NO01G04150.1|organism=Nannochloropsis oceanica|type=mRNA|length=2777bp
CACATGTGAGACTCGGGTGAAGCAATGGCCTGCAAGGATCCGGGCTTTAC
ACCATTTGCCTCGGCTAATCAGTCTCCTCGCACTATAGGCTTGGTAGCAT
GTCGTCATTGGGGTTTTTAGTGAGCCTCTTGTTGTGTTTAAGGGTGGCGG
CTTCCGTATTACCATGCTATTCACAATGACATGGGATGATGGATACTCCA
CACGCCTCTATCCTCTTAATTTCTGCTTGATAAGGCCATAGACAAGCCGC
CCGCCAACCCCTAAGCTGACATGCCGCATAAAGCGTCGCAATTACAGACA
ACTAGAACAGACGCACGTCCATGAGCGACCTGGCTGGGGCAGCTCAATTT
CTGTCCCGCGTCCCATCACCCACCATTCCTCTGCCCTCTCCCACCCTTCT
GACCTCAACACATAGCAGGCCTATCATGGGCAAAAAGGACAAGAAGGCCG
CGGCCTCCAGTGGCGACGATGAAAGTGCCACCGGGTTGCCCTCGACCGAG
TTTATGATCAAGCCCGAGACCGCCACACCTAAGCTGGACACATCCACCTG
GCCTCTGCTCCTCAAGAACTACGATCAGCTTCACGTCCGGACCGCGCGCT
ATACGCCCATTCCCATGGGTTCTTCTCCCCTGAAGCGCCCCTTAAAAGAA
TATCTGCGGTATGGTGTCATCAACTTGGACAAGCCGGCCAACCCATCGTC
TCACGAGGTGGTGGCGTGGATCAAGCGGATTCTCCGGGTGGAAAAAACGG
GGCACTCGGGCACGCTCGACCCCAAGGTAACAGGCTGCCTAATCGTTTGC
ATTGACCGGGCCACCCGCCTAGTCAAGGCCCAACAGGGGGCGGGGAAAGA
GTACGTGGGCGTGGTTCGTTTGCACGGGGCGATTGAAGGACACGGAAAGT
TGATGCGCGCGGTGGAGACGTTGACGGGGGCTTTGTTCCAGCGTCCACCT
CTGATTGCCGCCGTCAAGCGTCAGCTGCGCATTCGAACCATCTACGAGAG
TAAACTGGTAGAGTATGATGAGAAGAGGCATTTGGGAGTGTTTTGGGTGA
GTTGCGAGGCAGGGACGTACATCCGGACGTTGTGTGTGCATTTGGGGTTG
TTGGTGGGGACGGGAGGGCACATGCAGGAATTGCGGCGGGTAAGGTCTGG
GGTGTTGACTGAGAACGACCACTTGATGACGATGCATGACGTGTTAGACG
CACAGTATTCGTATGATACGTATAAAGATGAGACTTACCTGCGCCGGGCG
GTGTTGCCGTTGGAGATCTTGTTTGCGAATACGAAGAGGGTGGTGGTGAA
GGATAGTGCGGTCAATGCCATCTGCTATGGGGCCCGACTGATGATCCCAG
GCTTGTTGCGGTTCGCGGATGGTATTGAAGTAAACGATGAGGTGGTGATG
GTGACGACGAAGGGGGAGGCAATTGCAGTGGGGATAGCCCAGATGACGAC
GGCTGTAATGGCCACGTGCGACCATGGCATGGTGGCGAAAATCAAGCGAG
TGGTGATGGAACGAGATACCTACCCCCGAAGATGGGGGCTGGGACCAGTG
GCAACCAAGAAGAAGGGTTTGATGAAGGAGGGGAAGTTGGACAAGCACGG
ACGGCCGAACGCGGATACGCCCAAGGAGTATCTGGAAGCTTTTGAGGGCA
AGGGAGGACCGGCGGCAGCGGCAGGGGCAGGAGCAGGAGGAGGTGAAGTT
GTGAAGAAGGAGAAGAAGAAGGAGAAGAAAGAAAAGAAGGAGGTGGAGGA
TGTGGCAATATCGGTGGCAGATGGCAGCGGAGGGGAGGAGAATGGCGAGG
GAAAGAAGAAGAAAAAGAAGGACAAGAAGGAGAAAAAGCGACCGGCGGAG
GAAGTGCCGTCATCTCCCGAGGCGGCAGAGGAGAAGAAAAAGAAGAAGAA
GAAGAGCAAGGGGGAGTAAACGAGGAGAGACTCAGAGGTCGGGGTGGAGG
GACAGCGATGAAACAATACGATGTGACGCGTGTACGTTTGCTTTGCGCGG
GGTGTGTGTGTATGTATGCGTTTGGAATACTATCAAGGAAAGAAGCGAAT
GGGGAGGTAACATCCCGCCCGCTACCCACTGCCTGCCGCTCGCCGGCCTG
CGTGCATAGCCCCACGAAGATTAAGGAAAGATAAGCGACAGCAATGAGAA
ACATTGGCGGTGATAATTTGCCTTTGGCTTCTTTCAAGAGAAGACGCTTC
TGTTGGGCATTCCAAAGAAGTGGGTCGAGACCTCCTCTCACGCCAAAACC
ATCCTTGTCATGCAATCAAACACGTTCCTCTAATCAATTTCTCAACGTGT
GCACATGTAAACATGACTAGGAAGCGCATAACAAAGAAACAACAGCTTAC
AGCACCAAGGGAGAAAAATGGTAATTGCTCACCAATAATGCCCGATTTTC
GACTCATATTTGACTCGCAAGTTTTTCCTCTACCAATAAATTCATAAAAG
TACCAAAATCCCAAAGAATTACCTCAATTAGCTCTTTTCCACCGAACAAG
GTTTCTCCATTGAGGAACGTGTACCGGGCCCTCCCAGCCTCAATCAATCC
TTGAAGCAGAAGCAGACCGACCGACCGACAGACGACACCTCGGAAATTTA
GCAGTAAATTAATAGATTAAACCACGCGCAATGACTATTTCGGTCGATAA
GGATATGAATGTGTTGTTCATTTCTTATCTTGGGTCGATATCACCTGGGA
AATACACCCTTTTCCCGCACACTGTTCCTCGTGATGCGTTTCACTTGGGT
TTTCACTTGAAATTTACTCGAATTTAC back to topprotein sequence of NO01G04150.1 >NO01G04150.1-protein ID=NO01G04150.1-protein|Name=NO01G04150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=533bp
MSDLAGAAQFLSRVPSPTIPLPSPTLLTSTHSRPIMGKKDKKAAASSGDD
ESATGLPSTEFMIKPETATPKLDTSTWPLLLKNYDQLHVRTARYTPIPMG
SSPLKRPLKEYLRYGVINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLD
PKVTGCLIVCIDRATRLVKAQQGAGKEYVGVVRLHGAIEGHGKLMRAVET
LTGALFQRPPLIAAVKRQLRIRTIYESKLVEYDEKRHLGVFWVSCEAGTY
IRTLCVHLGLLVGTGGHMQELRRVRSGVLTENDHLMTMHDVLDAQYSYDT
YKDETYLRRAVLPLEILFANTKRVVVKDSAVNAICYGARLMIPGLLRFAD
GIEVNDEVVMVTTKGEAIAVGIAQMTTAVMATCDHGMVAKIKRVVMERDT
YPRRWGLGPVATKKKGLMKEGKLDKHGRPNADTPKEYLEAFEGKGGPAAA
AGAGAGGGEVVKKEKKKEKKEKKEVEDVAISVADGSGGEENGEGKKKKKK
DKKEKKRPAEEVPSSPEAAEEKKKKKKKSKGE* back to topmRNA from alignment at chr1:1109305..1112081- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G04150.1 ID=NO01G04150.1|Name=NO01G04150.1|organism=Nannochloropsis oceanica|type=mRNA|length=2777bp|location=Sequence derived from alignment at chr1:1109305..1112081- (Nannochloropsis oceanica)
CACATGTGAGACTCGGGTGAAGCAATGGCCTGCAAGGATCCGGGCTTTAC
ACCATTTGCCTCGGCTAATCAGTCTCCTCGCACTATAGGCTTGGTAGCAT
GTCGTCATTGGGGTTTTTAGTGAGCCTCTTGTTGTGTTTAAGGGTGGCGG
CTTCCGTATTACCATGCTATTCACAATGACATGGGATGATGGATACTCCA
CACGCCTCTATCCTCTTAATTTCTGCTTGATAAGGCCATAGACAAGCCGC
CCGCCAACCCCTAAGCTGACATGCCGCATAAAGCGTCGCAATTACAGACA
ACTAGAACAGACGCACGTCCATGAGCGACCTGGCTGGGGCAGCTCAATTT
CTGTCCCGCGTCCCATCACCCACCATTCCTCTGCCCTCTCCCACCCTTCT
GACCTCAACACATAGCAGGCCTATCATGGGCAAAAAGGACAAGAAGGCCG
CGGCCTCCAGTGGCGACGATGAAAGTGCCACCGGGTTGCCCTCGACCGAG
TTTATGATCAAGCCCGAGACCGCCACACCTAAGCTGGACACATCCACCTG
GCCTCTGCTCCTCAAGAACTACGATCAGCTTCACGTCCGGACCGCGCGCT
ATACGCCCATTCCCATGGGTTCTTCTCCCCTGAAGCGCCCCTTAAAAGAA
TATCTGCGGTATGGTGTCATCAACTTGGACAAGCCGGCCAACCCATCGTC
TCACGAGGTGGTGGCGTGGATCAAGCGGATTCTCCGGGTGGAAAAAACGG
GGCACTCGGGCACGCTCGACCCCAAGGTAACAGGCTGCCTAATCGTTTGC
ATTGACCGGGCCACCCGCCTAGTCAAGGCCCAACAGGGGGCGGGGAAAGA
GTACGTGGGCGTGGTTCGTTTGCACGGGGCGATTGAAGGACACGGAAAGT
TGATGCGCGCGGTGGAGACGTTGACGGGGGCTTTGTTCCAGCGTCCACCT
CTGATTGCCGCCGTCAAGCGTCAGCTGCGCATTCGAACCATCTACGAGAG
TAAACTGGTAGAGTATGATGAGAAGAGGCATTTGGGAGTGTTTTGGGTGA
GTTGCGAGGCAGGGACGTACATCCGGACGTTGTGTGTGCATTTGGGGTTG
TTGGTGGGGACGGGAGGGCACATGCAGGAATTGCGGCGGGTAAGGTCTGG
GGTGTTGACTGAGAACGACCACTTGATGACGATGCATGACGTGTTAGACG
CACAGTATTCGTATGATACGTATAAAGATGAGACTTACCTGCGCCGGGCG
GTGTTGCCGTTGGAGATCTTGTTTGCGAATACGAAGAGGGTGGTGGTGAA
GGATAGTGCGGTCAATGCCATCTGCTATGGGGCCCGACTGATGATCCCAG
GCTTGTTGCGGTTCGCGGATGGTATTGAAGTAAACGATGAGGTGGTGATG
GTGACGACGAAGGGGGAGGCAATTGCAGTGGGGATAGCCCAGATGACGAC
GGCTGTAATGGCCACGTGCGACCATGGCATGGTGGCGAAAATCAAGCGAG
TGGTGATGGAACGAGATACCTACCCCCGAAGATGGGGGCTGGGACCAGTG
GCAACCAAGAAGAAGGGTTTGATGAAGGAGGGGAAGTTGGACAAGCACGG
ACGGCCGAACGCGGATACGCCCAAGGAGTATCTGGAAGCTTTTGAGGGCA
AGGGAGGACCGGCGGCAGCGGCAGGGGCAGGAGCAGGAGGAGGTGAAGTT
GTGAAGAAGGAGAAGAAGAAGGAGAAGAAAGAAAAGAAGGAGGTGGAGGA
TGTGGCAATATCGGTGGCAGATGGCAGCGGAGGGGAGGAGAATGGCGAGG
GAAAGAAGAAGAAAAAGAAGGACAAGAAGGAGAAAAAGCGACCGGCGGAG
GAAGTGCCGTCATCTCCCGAGGCGGCAGAGGAGAAGAAAAAGAAGAAGAA
GAAGAGCAAGGGGGAGTAAACGAGGAGAGACTCAGAGGTCGGGGTGGAGG
GACAGCGATGAAACAATACGATGTGACGCGTGTACGTTTGCTTTGCGCGG
GGTGTGTGTGTATGTATGCGTTTGGAATACTATCAAGGAAAGAAGCGAAT
GGGGAGGTAACATCCCGCCCGCTACCCACTGCCTGCCGCTCGCCGGCCTG
CGTGCATAGCCCCACGAAGATTAAGGAAAGATAAGCGACAGCAATGAGAA
ACATTGGCGGTGATAATTTGCCTTTGGCTTCTTTCAAGAGAAGACGCTTC
TGTTGGGCATTCCAAAGAAGTGGGTCGAGACCTCCTCTCACGCCAAAACC
ATCCTTGTCATGCAATCAAACACGTTCCTCTAATCAATTTCTCAACGTGT
GCACATGTAAACATGACTAGGAAGCGCATAACAAAGAAACAACAGCTTAC
AGCACCAAGGGAGAAAAATGGTAATTGCTCACCAATAATGCCCGATTTTC
GACTCATATTTGACTCGCAAGTTTTTCCTCTACCAATAAATTCATAAAAG
TACCAAAATCCCAAAGAATTACCTCAATTAGCTCTTTTCCACCGAACAAG
GTTTCTCCATTGAGGAACGTGTACCGGGCCCTCCCAGCCTCAATCAATCC
TTGAAGCAGAAGCAGACCGACCGACCGACAGACGACACCTCGGAAATTTA
GCAGTAAATTAATAGATTAAACCACGCGCAATGACTATTTCGGTCGATAA
GGATATGAATGTGTTGTTCATTTCTTATCTTGGGTCGATATCACCTGGGA
AATACACCCTTTTCCCGCACACTGTTCCTCGTGATGCGTTTCACTTGGGT
TTTCACTTGAAATTTACTCGAATTTAC back to topCoding sequence (CDS) from alignment at chr1:1109305..1112081- >NO01G04150.1 ID=NO01G04150.1|Name=NO01G04150.1|organism=Nannochloropsis oceanica|type=CDS|length=1599bp|location=Sequence derived from alignment at chr1:1109305..1112081- (Nannochloropsis oceanica)
ATGAGCGACCTGGCTGGGGCAGCTCAATTTCTGTCCCGCGTCCCATCACC
CACCATTCCTCTGCCCTCTCCCACCCTTCTGACCTCAACACATAGCAGGC
CTATCATGGGCAAAAAGGACAAGAAGGCCGCGGCCTCCAGTGGCGACGAT
GAAAGTGCCACCGGGTTGCCCTCGACCGAGTTTATGATCAAGCCCGAGAC
CGCCACACCTAAGCTGGACACATCCACCTGGCCTCTGCTCCTCAAGAACT
ACGATCAGCTTCACGTCCGGACCGCGCGCTATACGCCCATTCCCATGGGT
TCTTCTCCCCTGAAGCGCCCCTTAAAAGAATATCTGCGGTATGGTGTCAT
CAACTTGGACAAGCCGGCCAACCCATCGTCTCACGAGGTGGTGGCGTGGA
TCAAGCGGATTCTCCGGGTGGAAAAAACGGGGCACTCGGGCACGCTCGAC
CCCAAGGTAACAGGCTGCCTAATCGTTTGCATTGACCGGGCCACCCGCCT
AGTCAAGGCCCAACAGGGGGCGGGGAAAGAGTACGTGGGCGTGGTTCGTT
TGCACGGGGCGATTGAAGGACACGGAAAGTTGATGCGCGCGGTGGAGACG
TTGACGGGGGCTTTGTTCCAGCGTCCACCTCTGATTGCCGCCGTCAAGCG
TCAGCTGCGCATTCGAACCATCTACGAGAGTAAACTGGTAGAGTATGATG
AGAAGAGGCATTTGGGAGTGTTTTGGGTGAGTTGCGAGGCAGGGACGTAC
ATCCGGACGTTGTGTGTGCATTTGGGGTTGTTGGTGGGGACGGGAGGGCA
CATGCAGGAATTGCGGCGGGTAAGGTCTGGGGTGTTGACTGAGAACGACC
ACTTGATGACGATGCATGACGTGTTAGACGCACAGTATTCGTATGATACG
TATAAAGATGAGACTTACCTGCGCCGGGCGGTGTTGCCGTTGGAGATCTT
GTTTGCGAATACGAAGAGGGTGGTGGTGAAGGATAGTGCGGTCAATGCCA
TCTGCTATGGGGCCCGACTGATGATCCCAGGCTTGTTGCGGTTCGCGGAT
GGTATTGAAGTAAACGATGAGGTGGTGATGGTGACGACGAAGGGGGAGGC
AATTGCAGTGGGGATAGCCCAGATGACGACGGCTGTAATGGCCACGTGCG
ACCATGGCATGGTGGCGAAAATCAAGCGAGTGGTGATGGAACGAGATACC
TACCCCCGAAGATGGGGGCTGGGACCAGTGGCAACCAAGAAGAAGGGTTT
GATGAAGGAGGGGAAGTTGGACAAGCACGGACGGCCGAACGCGGATACGC
CCAAGGAGTATCTGGAAGCTTTTGAGGGCAAGGGAGGACCGGCGGCAGCG
GCAGGGGCAGGAGCAGGAGGAGGTGAAGTTGTGAAGAAGGAGAAGAAGAA
GGAGAAGAAAGAAAAGAAGGAGGTGGAGGATGTGGCAATATCGGTGGCAG
ATGGCAGCGGAGGGGAGGAGAATGGCGAGGGAAAGAAGAAGAAAAAGAAG
GACAAGAAGGAGAAAAAGCGACCGGCGGAGGAAGTGCCGTCATCTCCCGA
GGCGGCAGAGGAGAAGAAAAAGAAGAAGAAGAAGAGCAAGGGGGAGTAA back to top
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