NO01G04130.1, NO01G04130.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G04130.1
Unique NameNO01G04130.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2335
Alignment locationchr1:1103488..1105822 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1103488..1105822 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G04130.1 vs.
Match: EWM29383.1 (signal recognition particle-docking protein FtsY [Nannochloropsis gaditana])

HSP 1 Score: 654.4 bits (1687), Expect = 3.000e-184
Identity = 360/492 (73.17%), Postives = 392/492 (79.67%), Query Frame = 0 
Query:    1 MMKRDFVETGYDASDEDSDTDSMEEEGYGSASRPCFCCQVADTHNKWVNGRPPRLLNLQQTLYRLVIISTYVGFILLAVQQVNFVLTSSTDKHEMAWTIGGAFVIATVPISLFQIFQHLSNFVEPKQQTHVIRMVSMVPLYAIQSWFSLRYQNLSLYTQCVREAYESYVIYAFVQYLISYMGSEEQLILKLQTKPAVLGRHMAPFCCLSPWSMGAEFLNRCKMGVLQYLGIRLVTLILTFALEYVGLYGEGEYSVRRGFFWVTVVNCISQTWALYILILFYHATHKELISINPCGKFFSIKSVVFASWWQSLLIGLMVHQGTIGELDSHSAEMVAKGVQDLLICTEMLMAAIAFTFAFPVSDFVSPIEPAYMKEPWATELRQPQQQQQQLQQQQQHQQQQGYHETGCEHSGGSGGGVGGKGSSSGGVIGSACKSADGIALLKGGSGGGGDLRRG--GGGSGYYHISGSSHHNHQKQHLRSGGGGGGGGGGGG 491
            MMKRD VET YDASDEDSD DS  EEG  S SRPCFCCQVAD+  K V+GRPPRLLN QQ+L RL +ISTYV FI LAVQQVNFVLT+STDKHEMAWTIGGAFVIATVPISLFQIFQHLSNFVEPKQQTHVIRM+SMVPLYAIQSWFSLRYQ+LSLYTQCVREAYESYVIYAFVQYLI+YMGSE QLI KL+TKPAVLGRHMAPFCCL PWSMGAEFL RCK+GVLQYLG+RL TL+LTFALE + LY EGEY+VRRGFFW+TV NCISQTWALYILILFYHATHKELISINPCGKFFS+KSVVFASWWQSLLIGLMVHQGTIGELDSHSAEMVAK +QDLLICTEM MAAIAFTFAFPVSDFVSPIEP Y K+P +                    Q   +   G  H   S GGV G G  +  ++G    + D ++LLK GS G G++RRG  G G G      +  H +Q+    + G G   GG GG
Sbjct:  543 MMKRDIVETDYDASDEDSDCDSQGEEGIVSGSRPCFCCQVADSQIKRVSGRPPRLLNFQQSLSRLAMISTYVCFIFLAVQQVNFVLTNSTDKHEMAWTIGGAFVIATVPISLFQIFQHLSNFVEPKQQTHVIRMISMVPLYAIQSWFSLRYQSLSLYTQCVREAYESYVIYAFVQYLINYMGSEAQLIRKLETKPAVLGRHMAPFCCLPPWSMGAEFLKRCKVGVLQYLGVRLATLVLTFALESLDLYAEGEYTVRRGFFWMTVANCISQTWALYILILFYHATHKELISINPCGKFFSVKSVVFASWWQSLLIGLMVHQGTIGELDSHSAEMVAKAIQDLLICTEMFMAAIAFTFAFPVSDFVSPIEPPYYKDPGSDA------------------QDSFWEGEGALHR--SLGGVEGGGPLN--LMGDESPT-DTVSLLKSGSAGTGEMRRGMTGAGKGTVPSFSAGQHAYQQNEGGALGRGSSVGGDGG 1011
The following BLAST results are available for this feature:
BLAST of NO01G04130.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29383.13.000e-18473.17signal recognition particle-docking protein FtsY [... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G04130NO01G04130Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G04130.1NO01G04130.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G04130.1.cds1NO01G04130.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G04130.1 ID=NO01G04130.1|Name=NO01G04130.1|organism=Nannochloropsis oceanica|type=mRNA|length=2335bp
ATTCCCCAAATCATGTGTCCATACATGTGTCCATAAAAGTAGTATATTTC
TTGGCCACGCACGCCCCGTGGGAGCTTCTTTTGGCTCTGCGGGTTGGATC
CCTGCTCCGCATCCTTTGCTACGGCCCACGGAACGTGTTTCCACTAGAGC
ACCATGATGAAGCGGGACTTTGTCGAGACGGGCTACGATGCAAGCGACGA
GGACAGCGATACGGACAGTATGGAGGAGGAAGGGTACGGGAGCGCGAGCC
GGCCTTGTTTTTGTTGTCAAGTTGCCGATACCCACAACAAGTGGGTCAAT
GGGCGGCCGCCTCGCTTGCTAAACTTGCAACAGACCTTATACCGCCTCGT
CATCATCTCGACCTACGTGGGGTTCATCCTCCTGGCCGTGCAACAGGTTA
ATTTTGTGCTAACCAGTTCCACGGACAAGCACGAAATGGCTTGGACGATA
GGGGGAGCCTTCGTCATTGCTACAGTGCCCATCTCCCTCTTCCAAATATT
CCAGCACCTCTCCAACTTCGTTGAACCCAAGCAACAGACCCACGTCATCC
GCATGGTATCCATGGTCCCTCTTTATGCAATTCAATCCTGGTTTTCCCTC
CGCTACCAGAATTTGAGTTTATACACACAGTGCGTGCGAGAGGCCTACGA
ATCCTACGTCATCTATGCCTTTGTCCAATACCTCATCAGTTATATGGGTA
GCGAGGAGCAACTCATCCTTAAACTCCAGACTAAGCCCGCCGTACTTGGA
CGACATATGGCGCCTTTCTGCTGCCTCTCCCCTTGGTCGATGGGGGCCGA
GTTTCTCAATCGATGCAAGATGGGTGTGCTCCAGTACCTGGGCATCCGTC
TCGTCACCCTCATCTTGACATTCGCCTTGGAATACGTCGGGCTTTACGGA
GAAGGAGAATACTCCGTTCGGAGGGGTTTTTTCTGGGTGACCGTCGTGAA
TTGCATCTCTCAAACCTGGGCATTGTACATCCTTATTCTTTTCTATCACG
CCACCCACAAGGAGCTCATTTCCATCAACCCTTGCGGAAAATTCTTCTCG
ATTAAGTCGGTAGTCTTTGCCTCTTGGTGGCAATCCCTCTTGATTGGCTT
GATGGTTCATCAAGGGACCATAGGCGAGCTCGATAGTCATTCCGCCGAGA
TGGTTGCCAAAGGAGTGCAAGATCTGTTGATCTGTACGGAAATGCTCATG
GCTGCGATTGCATTTACTTTTGCCTTTCCCGTCTCTGACTTTGTCTCTCC
CATCGAGCCGGCCTACATGAAGGAGCCCTGGGCAACGGAGTTGAGGCAGC
CGCAGCAACAACAGCAGCAGTTGCAACAACAACAACAACACCAACAACAG
CAGGGGTATCATGAGACTGGGTGTGAGCATAGTGGGGGGAGCGGGGGAGG
GGTGGGTGGGAAGGGGAGCAGCAGTGGAGGGGTTATTGGGAGTGCTTGCA
AGAGCGCGGATGGCATAGCGTTACTAAAGGGAGGAAGTGGTGGAGGAGGG
GACTTGCGTAGGGGGGGGGGCGGGAGCGGGTATTATCACATAAGTGGATC
GTCGCATCACAACCATCAGAAACAGCATCTACGAAGTGGTGGTGGAGGTG
GGGGGGGGGGGGGGGGGGGAGGTACCTTCGATTTGGGCGGCATTGTGGAC
AAGTTGTGTGCCAATGGATGTGAGGGAGGATTTCAAGTTAGCGACGTACC
AGGTCATGGACGACTGTTCGTGTTTCAAACGAAACGGGGGGAATGGAGGT
TTGAATGGGAGCTGGTGGCCCTGTCGGTGTAGAAGTCGCTGTGGGCAGAC
CAAGGCGCACAGGAGCACCGGCAGCGGTATGAATGGGAGTGGGAGGGACG
GGGGTAGCGGGGTTAGTAAGGCAGGTGGGAGACATTCCTCCGCAGCCGCG
TCCTCGTCCTCTGTCACCGGTCCGCCAATGGTGGCGATGGTTGGAGCCGT
GGGTACGAGCAACAGCAGCGGTGGGAATTGATCGTATTTCGGTAAGAGCC
AGACGGATTCGGCGGGGGCGGATGGGAAACGTCGCTAGAGGGAGCTCCTC
CACGAATGCTGGTGGGGGTGCTTTCGCCAGCATTGTCATCAGCCACATCG
TTTCACCGTCTCCCTCAATATCCTCCACCTTCTTCCAATTGCCGTTGTTG
ATTTAGCGTTCAAAAGTGAAAAATGAGCTGAAATGGTAAAGCAGTGTCCA
TGGTAAGTAAGGATGTCGCTGTGTGTGAGATGGGATCTCGCCAGTGACCT
CATAAAAAAGGTGCCCGATTTGAGAGTTTGTGCAAAAGAAGTGGGACATC
AGAACTGAAGAATTATCTTTAGTAATAGACTCTGG
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protein sequence of NO01G04130.1

>NO01G04130.1-protein ID=NO01G04130.1-protein|Name=NO01G04130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=543bp
MMKRDFVETGYDASDEDSDTDSMEEEGYGSASRPCFCCQVADTHNKWVNG
RPPRLLNLQQTLYRLVIISTYVGFILLAVQQVNFVLTSSTDKHEMAWTIG
GAFVIATVPISLFQIFQHLSNFVEPKQQTHVIRMVSMVPLYAIQSWFSLR
YQNLSLYTQCVREAYESYVIYAFVQYLISYMGSEEQLILKLQTKPAVLGR
HMAPFCCLSPWSMGAEFLNRCKMGVLQYLGIRLVTLILTFALEYVGLYGE
GEYSVRRGFFWVTVVNCISQTWALYILILFYHATHKELISINPCGKFFSI
KSVVFASWWQSLLIGLMVHQGTIGELDSHSAEMVAKGVQDLLICTEMLMA
AIAFTFAFPVSDFVSPIEPAYMKEPWATELRQPQQQQQQLQQQQQHQQQQ
GYHETGCEHSGGSGGGVGGKGSSSGGVIGSACKSADGIALLKGGSGGGGD
LRRGGGGSGYYHISGSSHHNHQKQHLRSGGGGGGGGGGGGTFDLGGIVDK
LCANGCEGGFQVSDVPGHGRLFVFQTKRGEWRFEWELVALSV*
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mRNA from alignment at chr1:1103488..1105822+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G04130.1 ID=NO01G04130.1|Name=NO01G04130.1|organism=Nannochloropsis oceanica|type=mRNA|length=2335bp|location=Sequence derived from alignment at chr1:1103488..1105822+ (Nannochloropsis oceanica)
ATTCCCCAAATCATGTGTCCATACATGTGTCCATAAAAGTAGTATATTTC
TTGGCCACGCACGCCCCGTGGGAGCTTCTTTTGGCTCTGCGGGTTGGATC
CCTGCTCCGCATCCTTTGCTACGGCCCACGGAACGTGTTTCCACTAGAGC
ACCATGATGAAGCGGGACTTTGTCGAGACGGGCTACGATGCAAGCGACGA
GGACAGCGATACGGACAGTATGGAGGAGGAAGGGTACGGGAGCGCGAGCC
GGCCTTGTTTTTGTTGTCAAGTTGCCGATACCCACAACAAGTGGGTCAAT
GGGCGGCCGCCTCGCTTGCTAAACTTGCAACAGACCTTATACCGCCTCGT
CATCATCTCGACCTACGTGGGGTTCATCCTCCTGGCCGTGCAACAGGTTA
ATTTTGTGCTAACCAGTTCCACGGACAAGCACGAAATGGCTTGGACGATA
GGGGGAGCCTTCGTCATTGCTACAGTGCCCATCTCCCTCTTCCAAATATT
CCAGCACCTCTCCAACTTCGTTGAACCCAAGCAACAGACCCACGTCATCC
GCATGGTATCCATGGTCCCTCTTTATGCAATTCAATCCTGGTTTTCCCTC
CGCTACCAGAATTTGAGTTTATACACACAGTGCGTGCGAGAGGCCTACGA
ATCCTACGTCATCTATGCCTTTGTCCAATACCTCATCAGTTATATGGGTA
GCGAGGAGCAACTCATCCTTAAACTCCAGACTAAGCCCGCCGTACTTGGA
CGACATATGGCGCCTTTCTGCTGCCTCTCCCCTTGGTCGATGGGGGCCGA
GTTTCTCAATCGATGCAAGATGGGTGTGCTCCAGTACCTGGGCATCCGTC
TCGTCACCCTCATCTTGACATTCGCCTTGGAATACGTCGGGCTTTACGGA
GAAGGAGAATACTCCGTTCGGAGGGGTTTTTTCTGGGTGACCGTCGTGAA
TTGCATCTCTCAAACCTGGGCATTGTACATCCTTATTCTTTTCTATCACG
CCACCCACAAGGAGCTCATTTCCATCAACCCTTGCGGAAAATTCTTCTCG
ATTAAGTCGGTAGTCTTTGCCTCTTGGTGGCAATCCCTCTTGATTGGCTT
GATGGTTCATCAAGGGACCATAGGCGAGCTCGATAGTCATTCCGCCGAGA
TGGTTGCCAAAGGAGTGCAAGATCTGTTGATCTGTACGGAAATGCTCATG
GCTGCGATTGCATTTACTTTTGCCTTTCCCGTCTCTGACTTTGTCTCTCC
CATCGAGCCGGCCTACATGAAGGAGCCCTGGGCAACGGAGTTGAGGCAGC
CGCAGCAACAACAGCAGCAGTTGCAACAACAACAACAACACCAACAACAG
CAGGGGTATCATGAGACTGGGTGTGAGCATAGTGGGGGGAGCGGGGGAGG
GGTGGGTGGGAAGGGGAGCAGCAGTGGAGGGGTTATTGGGAGTGCTTGCA
AGAGCGCGGATGGCATAGCGTTACTAAAGGGAGGAAGTGGTGGAGGAGGG
GACTTGCGTAGGGGGGGGGGCGGGAGCGGGTATTATCACATAAGTGGATC
GTCGCATCACAACCATCAGAAACAGCATCTACGAAGTGGTGGTGGAGGTG
GGGGGGGGGGGGGGGGGGGAGGTACCTTCGATTTGGGCGGCATTGTGGAC
AAGTTGTGTGCCAATGGATGTGAGGGAGGATTTCAAGTTAGCGACGTACC
AGGTCATGGACGACTGTTCGTGTTTCAAACGAAACGGGGGGAATGGAGGT
TTGAATGGGAGCTGGTGGCCCTGTCGGTGTAGAAGTCGCTGTGGGCAGAC
CAAGGCGCACAGGAGCACCGGCAGCGGTATGAATGGGAGTGGGAGGGACG
GGGGTAGCGGGGTTAGTAAGGCAGGTGGGAGACATTCCTCCGCAGCCGCG
TCCTCGTCCTCTGTCACCGGTCCGCCAATGGTGGCGATGGTTGGAGCCGT
GGGTACGAGCAACAGCAGCGGTGGGAATTGATCGTATTTCGGTAAGAGCC
AGACGGATTCGGCGGGGGCGGATGGGAAACGTCGCTAGAGGGAGCTCCTC
CACGAATGCTGGTGGGGGTGCTTTCGCCAGCATTGTCATCAGCCACATCG
TTTCACCGTCTCCCTCAATATCCTCCACCTTCTTCCAATTGCCGTTGTTG
ATTTAGCGTTCAAAAGTGAAAAATGAGCTGAAATGGTAAAGCAGTGTCCA
TGGTAAGTAAGGATGTCGCTGTGTGTGAGATGGGATCTCGCCAGTGACCT
CATAAAAAAGGTGCCCGATTTGAGAGTTTGTGCAAAAGAAGTGGGACATC
AGAACTGAAGAATTATCTTTAGTAATAGACTCTGG
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Coding sequence (CDS) from alignment at chr1:1103488..1105822+

>NO01G04130.1 ID=NO01G04130.1|Name=NO01G04130.1|organism=Nannochloropsis oceanica|type=CDS|length=1629bp|location=Sequence derived from alignment at chr1:1103488..1105822+ (Nannochloropsis oceanica)
ATGATGAAGCGGGACTTTGTCGAGACGGGCTACGATGCAAGCGACGAGGA
CAGCGATACGGACAGTATGGAGGAGGAAGGGTACGGGAGCGCGAGCCGGC
CTTGTTTTTGTTGTCAAGTTGCCGATACCCACAACAAGTGGGTCAATGGG
CGGCCGCCTCGCTTGCTAAACTTGCAACAGACCTTATACCGCCTCGTCAT
CATCTCGACCTACGTGGGGTTCATCCTCCTGGCCGTGCAACAGGTTAATT
TTGTGCTAACCAGTTCCACGGACAAGCACGAAATGGCTTGGACGATAGGG
GGAGCCTTCGTCATTGCTACAGTGCCCATCTCCCTCTTCCAAATATTCCA
GCACCTCTCCAACTTCGTTGAACCCAAGCAACAGACCCACGTCATCCGCA
TGGTATCCATGGTCCCTCTTTATGCAATTCAATCCTGGTTTTCCCTCCGC
TACCAGAATTTGAGTTTATACACACAGTGCGTGCGAGAGGCCTACGAATC
CTACGTCATCTATGCCTTTGTCCAATACCTCATCAGTTATATGGGTAGCG
AGGAGCAACTCATCCTTAAACTCCAGACTAAGCCCGCCGTACTTGGACGA
CATATGGCGCCTTTCTGCTGCCTCTCCCCTTGGTCGATGGGGGCCGAGTT
TCTCAATCGATGCAAGATGGGTGTGCTCCAGTACCTGGGCATCCGTCTCG
TCACCCTCATCTTGACATTCGCCTTGGAATACGTCGGGCTTTACGGAGAA
GGAGAATACTCCGTTCGGAGGGGTTTTTTCTGGGTGACCGTCGTGAATTG
CATCTCTCAAACCTGGGCATTGTACATCCTTATTCTTTTCTATCACGCCA
CCCACAAGGAGCTCATTTCCATCAACCCTTGCGGAAAATTCTTCTCGATT
AAGTCGGTAGTCTTTGCCTCTTGGTGGCAATCCCTCTTGATTGGCTTGAT
GGTTCATCAAGGGACCATAGGCGAGCTCGATAGTCATTCCGCCGAGATGG
TTGCCAAAGGAGTGCAAGATCTGTTGATCTGTACGGAAATGCTCATGGCT
GCGATTGCATTTACTTTTGCCTTTCCCGTCTCTGACTTTGTCTCTCCCAT
CGAGCCGGCCTACATGAAGGAGCCCTGGGCAACGGAGTTGAGGCAGCCGC
AGCAACAACAGCAGCAGTTGCAACAACAACAACAACACCAACAACAGCAG
GGGTATCATGAGACTGGGTGTGAGCATAGTGGGGGGAGCGGGGGAGGGGT
GGGTGGGAAGGGGAGCAGCAGTGGAGGGGTTATTGGGAGTGCTTGCAAGA
GCGCGGATGGCATAGCGTTACTAAAGGGAGGAAGTGGTGGAGGAGGGGAC
TTGCGTAGGGGGGGGGGCGGGAGCGGGTATTATCACATAAGTGGATCGTC
GCATCACAACCATCAGAAACAGCATCTACGAAGTGGTGGTGGAGGTGGGG
GGGGGGGGGGGGGGGGAGGTACCTTCGATTTGGGCGGCATTGTGGACAAG
TTGTGTGCCAATGGATGTGAGGGAGGATTTCAAGTTAGCGACGTACCAGG
TCATGGACGACTGTTCGTGTTTCAAACGAAACGGGGGGAATGGAGGTTTG
AATGGGAGCTGGTGGCCCTGTCGGTGTAG
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Synonyms
Publications