NO01G04090.1, NO01G04090.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G04090.1
Unique NameNO01G04090.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1968
Alignment locationchr1:1091006..1092973 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1091006..1092973 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO01G04090.1 vs.
Match: EWM29341.1 (tubulin-specific chaperone [Nannochloropsis gaditana])

HSP 1 Score: 726.9 bits (1875), Expect = 5.700e-206
Identity = 401/649 (61.79%), Postives = 474/649 (73.04%), Query Frame = 0
Query:    8 DFCLGQRVVDDEGNRGTVRYLGPVASAKDPTAAWVGVEWDDSTRGKHDGSVVTAAGEIVRHFTCVKPGLTSASFLKPNKLNRGTSFMAVLHRRYVGPDAPLEAPNQVFEGAYANTSKGGQKAIEFLGEKKIRARQQIGTLTKVSMRGEHVAWAGEEEV-QEASHLVEVDVQGNLWSDWEELGKLARQLPRLEILHLNSNLMRPLQAPVEEGESLRRSFLGLRVLVLNNCGLSGWKTVMHLEECLPCLEEVGLARNEGLGGEKGGREKMKEAIEARRERTEGGGGLHALFHKLKSLDLSGTGLGDWREEVALFMGLPELKILSLNENEIEGVGSGEEGGGGGGAAAATTATSSPYGFKNLQAIHLSYNRISSWSSIDALTHFPSLTSLRFASNPLTRGMGQGEARQLLIARVPTLTRVNGAEISVKERIDAERSYIRRVNRELNRVEGEKGGGSQGGREGGREGRVATNLTQTKAAY-LKKEHPRWLSLVQQHGEIASWAVGGEGGGAGVGTGTLAKGMMLVTLVSMASGSMTLPPVEKKIPGTLTVGQLKLLFSKLFKLEVGLQVLYYKSDARAPPSVLDEDEESLGYFGLTSGSVIYMNERDLRQEAREDESRREAERERMEAQLEQVERLDRLKRAQIGLEKQGAAA 655
            DF LGQRV D+EGNRGTVRYLGPVASAKDP AAWVGVEWDD  RGKHDGSVVT AG+I RHF+C+KPG T ASFLKPNKL+RG S MAVLH+RYV PDAPLEAPNQVFE AYANTS+GGQK IEF GE +IRARQQIG L KVS+RGE VAWAGEEEV +EASHLVEVD+QGNLWSDWEELG++ARQ+PRLE LHLNSNLMRPL+ P      LR SF  LRVL+LN+CGLS W TV+H+EEC+P L E+GLARN  LGG+  G      A   RR R+E    +HA F++L+ LDLSGTGL DW +EVA    LP L+ L+LNEN +  + +G     G        AT S  GF+ L+A+ LS N + SWS +DAL   P L SLRFA NPLTRGMGQGEARQLLIAR+  L R+NG+E+S KER DAE+SY+RRV RE  R  G   G  +G  E          L++ +  + LK EHPRW  L++QHGE      G E G    G G+LA+ M+LV LVSMA GS+T  PVE+K+PG+LTVGQLKLL  +LFKLE  +Q L  K+D +APPS+L  DEE+L Y G TSG  I+MNERDL+QEARE ESR  A RERM AQ E+ ER++R++R ++  EKQ   A
Sbjct:    9 DFSLGQRVADEEGNRGTVRYLGPVASAKDPEAAWVGVEWDDPGRGKHDGSVVTTAGKIHRHFSCLKPGPTCASFLKPNKLDRGVSLMAVLHKRYVVPDAPLEAPNQVFENAYANTSRGGQKKIEFHGETQIRARQQIGRLEKVSLRGERVAWAGEEEVKEEASHLVEVDLQGNLWSDWEELGRMARQMPRLENLHLNSNLMRPLETPAT--PELRGSFQALRVLILNSCGLSSWATVLHVEECVPGLVELGLARN-ALGGQDLG-----TAWARRRARSE----IHAPFYRLQRLDLSGTGLRDWEDEVAFLKTLPSLRALNLNENLLVEIPAGTVQTHG--------ATHSALGFQALEALDLSCNLVESWSCLDALNLLPRLHSLRFAGNPLTRGMGQGEARQLLIARMGALRRLNGSEVSTKERADAEKSYLRRVAREWGRRRGSGDGQGEGANE--------VMLSEEECIHQLKLEHPRWWPLMEQHGESVGGGNGVERGDGASGLGSLAREMVLVRLVSMAPGSITQGPVERKLPGSLTVGQLKLLCQRLFKLEAAMQTLSLKADPQAPPSLLGTDEEALAYCGATSGCEIFMNERDLKQEAREKESRETAARERMLAQAEEAERVERMRRREVAREKQSVVA 629          
The following BLAST results are available for this feature:
BLAST of NO01G04090.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29341.15.700e-20661.79tubulin-specific chaperone [Nannochloropsis gadita... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G04090NO01G04090Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G04090.1NO01G04090.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G04090.1.cds1NO01G04090.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G04090.1 ID=NO01G04090.1|Name=NO01G04090.1|organism=Nannochloropsis oceanica|type=mRNA|length=1968bp
ATGACGGAGGAGCAGCAGCCGGACTTTTGTCTGGGCCAGCGCGTGGTGGA
TGACGAAGGAAACCGGGGTACGGTGCGGTACCTTGGCCCTGTGGCCTCTG
CCAAGGATCCAACCGCGGCTTGGGTGGGGGTGGAATGGGACGACTCTACT
CGAGGCAAGCACGACGGGAGCGTGGTGACGGCCGCGGGGGAGATTGTCAG
ACACTTTACATGTGTCAAGCCAGGATTGACGAGCGCGTCGTTCCTGAAGC
CGAATAAGCTGAATAGGGGGACAAGTTTCATGGCGGTGTTGCATCGTCGG
TACGTCGGTCCGGATGCCCCTCTGGAAGCACCAAATCAGGTGTTCGAAGG
GGCCTATGCAAACACCTCTAAAGGAGGACAGAAGGCGATTGAATTTCTTG
GAGAGAAAAAGATTAGGGCCAGGCAACAGATCGGGACATTGACCAAAGTG
TCCATGAGGGGGGAGCATGTCGCGTGGGCGGGGGAGGAAGAGGTGCAGGA
GGCATCTCACCTAGTCGAAGTGGATGTCCAAGGTAATTTGTGGTCAGATT
GGGAAGAGTTGGGGAAACTCGCTCGACAACTGCCACGCTTGGAGATATTG
CATTTGAATAGTAATCTGATGCGCCCGTTACAAGCGCCGGTCGAGGAGGG
GGAGAGTCTGAGAAGGTCGTTCTTGGGTTTGAGAGTGTTAGTGTTGAATA
ACTGTGGGTTGAGTGGGTGGAAAACGGTGATGCACTTGGAAGAGTGTCTG
CCGTGTTTGGAGGAGGTGGGTCTGGCAAGGAATGAGGGGTTGGGTGGGGA
AAAGGGGGGAAGGGAGAAGATGAAGGAGGCGATTGAGGCACGGAGAGAAC
GGACGGAGGGAGGAGGGGGATTGCATGCGTTGTTTCATAAGTTGAAGAGT
TTGGATTTGTCAGGGACTGGATTGGGGGACTGGAGGGAGGAGGTAGCATT
ATTTATGGGCCTGCCGGAGTTGAAAATTCTCAGTTTGAATGAGAATGAGA
TTGAGGGGGTGGGGTCGGGCGAAGAAGGAGGAGGAGGAGGAGGAGCAGCA
GCAGCAACAACAGCAACATCCTCTCCCTACGGCTTCAAAAATCTCCAAGC
CATCCACCTTAGCTACAACCGTATCTCCTCCTGGTCCTCCATCGATGCCC
TCACCCACTTTCCCTCCCTGACATCCTTGCGTTTCGCTTCGAACCCTCTC
ACCAGAGGGATGGGACAAGGTGAAGCCCGCCAGCTCCTGATCGCACGCGT
TCCCACACTGACGAGAGTCAATGGAGCGGAGATCTCAGTGAAAGAAAGAA
TCGACGCAGAAAGGAGCTACATTAGGAGAGTTAACAGGGAGTTGAATCGA
GTGGAGGGAGAGAAAGGAGGAGGGAGTCAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAAGAGTGGCTACAAACTTGACACAGACGAAAGCAGCATATTTGA
AAAAAGAGCACCCGCGATGGTTATCACTGGTGCAACAACACGGTGAAATT
GCGAGTTGGGCAGTGGGAGGGGAGGGCGGAGGGGCAGGGGTAGGAACAGG
GACATTGGCAAAGGGGATGATGTTGGTAACGTTAGTGAGCATGGCGTCGG
GGTCCATGACCTTGCCTCCGGTGGAGAAAAAAATCCCGGGGACTCTAACG
GTCGGGCAGTTGAAGTTACTGTTTAGTAAGTTGTTCAAGTTGGAGGTGGG
GTTGCAGGTGTTGTACTACAAGAGCGATGCGAGGGCCCCCCCCAGCGTGC
TGGATGAGGACGAGGAGAGCTTGGGGTATTTCGGCTTGACAAGTGGAAGT
GTGATTTATATGAATGAACGGGACTTGAGGCAGGAGGCGAGGGAGGATGA
AAGCCGCAGGGAGGCGGAGAGGGAGAGGATGGAGGCACAGTTGGAGCAGG
TGGAAAGATTAGACCGATTGAAACGGGCACAGATTGGCTTGGAGAAGCAG
GGCGCAGCGGCTCGTTAG
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protein sequence of NO01G04090.1

>NO01G04090.1-protein ID=NO01G04090.1-protein|Name=NO01G04090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=656bp
MTEEQQPDFCLGQRVVDDEGNRGTVRYLGPVASAKDPTAAWVGVEWDDST
RGKHDGSVVTAAGEIVRHFTCVKPGLTSASFLKPNKLNRGTSFMAVLHRR
YVGPDAPLEAPNQVFEGAYANTSKGGQKAIEFLGEKKIRARQQIGTLTKV
SMRGEHVAWAGEEEVQEASHLVEVDVQGNLWSDWEELGKLARQLPRLEIL
HLNSNLMRPLQAPVEEGESLRRSFLGLRVLVLNNCGLSGWKTVMHLEECL
PCLEEVGLARNEGLGGEKGGREKMKEAIEARRERTEGGGGLHALFHKLKS
LDLSGTGLGDWREEVALFMGLPELKILSLNENEIEGVGSGEEGGGGGGAA
AATTATSSPYGFKNLQAIHLSYNRISSWSSIDALTHFPSLTSLRFASNPL
TRGMGQGEARQLLIARVPTLTRVNGAEISVKERIDAERSYIRRVNRELNR
VEGEKGGGSQGGREGGREGRVATNLTQTKAAYLKKEHPRWLSLVQQHGEI
ASWAVGGEGGGAGVGTGTLAKGMMLVTLVSMASGSMTLPPVEKKIPGTLT
VGQLKLLFSKLFKLEVGLQVLYYKSDARAPPSVLDEDEESLGYFGLTSGS
VIYMNERDLRQEAREDESRREAERERMEAQLEQVERLDRLKRAQIGLEKQ
GAAAR*
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mRNA from alignment at chr1:1091006..1092973-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G04090.1 ID=NO01G04090.1|Name=NO01G04090.1|organism=Nannochloropsis oceanica|type=mRNA|length=1968bp|location=Sequence derived from alignment at chr1:1091006..1092973- (Nannochloropsis oceanica)
ATGACGGAGGAGCAGCAGCCGGACTTTTGTCTGGGCCAGCGCGTGGTGGA TGACGAAGGAAACCGGGGTACGGTGCGGTACCTTGGCCCTGTGGCCTCTG CCAAGGATCCAACCGCGGCTTGGGTGGGGGTGGAATGGGACGACTCTACT CGAGGCAAGCACGACGGGAGCGTGGTGACGGCCGCGGGGGAGATTGTCAG ACACTTTACATGTGTCAAGCCAGGATTGACGAGCGCGTCGTTCCTGAAGC CGAATAAGCTGAATAGGGGGACAAGTTTCATGGCGGTGTTGCATCGTCGG TACGTCGGTCCGGATGCCCCTCTGGAAGCACCAAATCAGGTGTTCGAAGG GGCCTATGCAAACACCTCTAAAGGAGGACAGAAGGCGATTGAATTTCTTG GAGAGAAAAAGATTAGGGCCAGGCAACAGATCGGGACATTGACCAAAGTG TCCATGAGGGGGGAGCATGTCGCGTGGGCGGGGGAGGAAGAGGTGCAGGA GGCATCTCACCTAGTCGAAGTGGATGTCCAAGGTAATTTGTGGTCAGATT GGGAAGAGTTGGGGAAACTCGCTCGACAACTGCCACGCTTGGAGATATTG CATTTGAATAGTAATCTGATGCGCCCGTTACAAGCGCCGGTCGAGGAGGG GGAGAGTCTGAGAAGGTCGTTCTTGGGTTTGAGAGTGTTAGTGTTGAATA ACTGTGGGTTGAGTGGGTGGAAAACGGTGATGCACTTGGAAGAGTGTCTG CCGTGTTTGGAGGAGGTGGGTCTGGCAAGGAATGAGGGGTTGGGTGGGGA AAAGGGGGGAAGGGAGAAGATGAAGGAGGCGATTGAGGCACGGAGAGAAC GGACGGAGGGAGGAGGGGGATTGCATGCGTTGTTTCATAAGTTGAAGAGT TTGGATTTGTCAGGGACTGGATTGGGGGACTGGAGGGAGGAGGTAGCATT ATTTATGGGCCTGCCGGAGTTGAAAATTCTCAGTTTGAATGAGAATGAGA TTGAGGGGGTGGGGTCGGGCGAAGAAGGAGGAGGAGGAGGAGGAGCAGCA GCAGCAACAACAGCAACATCCTCTCCCTACGGCTTCAAAAATCTCCAAGC CATCCACCTTAGCTACAACCGTATCTCCTCCTGGTCCTCCATCGATGCCC TCACCCACTTTCCCTCCCTGACATCCTTGCGTTTCGCTTCGAACCCTCTC ACCAGAGGGATGGGACAAGGTGAAGCCCGCCAGCTCCTGATCGCACGCGT TCCCACACTGACGAGAGTCAATGGAGCGGAGATCTCAGTGAAAGAAAGAA TCGACGCAGAAAGGAGCTACATTAGGAGAGTTAACAGGGAGTTGAATCGA GTGGAGGGAGAGAAAGGAGGAGGGAGTCAGGGAGGGAGGGAGGGAGGGAG GGAGGGAAGAGTGGCTACAAACTTGACACAGACGAAAGCAGCATATTTGA AAAAAGAGCACCCGCGATGGTTATCACTGGTGCAACAACACGGTGAAATT GCGAGTTGGGCAGTGGGAGGGGAGGGCGGAGGGGCAGGGGTAGGAACAGG GACATTGGCAAAGGGGATGATGTTGGTAACGTTAGTGAGCATGGCGTCGG GGTCCATGACCTTGCCTCCGGTGGAGAAAAAAATCCCGGGGACTCTAACG GTCGGGCAGTTGAAGTTACTGTTTAGTAAGTTGTTCAAGTTGGAGGTGGG GTTGCAGGTGTTGTACTACAAGAGCGATGCGAGGGCCCCCCCCAGCGTGC TGGATGAGGACGAGGAGAGCTTGGGGTATTTCGGCTTGACAAGTGGAAGT GTGATTTATATGAATGAACGGGACTTGAGGCAGGAGGCGAGGGAGGATGA AAGCCGCAGGGAGGCGGAGAGGGAGAGGATGGAGGCACAGTTGGAGCAGG TGGAAAGATTAGACCGATTGAAACGGGCACAGATTGGCTTGGAGAAGCAG GGCGCAGCGGCTCGTTAG
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Coding sequence (CDS) from alignment at chr1:1091006..1092973-

>NO01G04090.1 ID=NO01G04090.1|Name=NO01G04090.1|organism=Nannochloropsis oceanica|type=CDS|length=1968bp|location=Sequence derived from alignment at chr1:1091006..1092973- (Nannochloropsis oceanica)
ATGACGGAGGAGCAGCAGCCGGACTTTTGTCTGGGCCAGCGCGTGGTGGA
TGACGAAGGAAACCGGGGTACGGTGCGGTACCTTGGCCCTGTGGCCTCTG
CCAAGGATCCAACCGCGGCTTGGGTGGGGGTGGAATGGGACGACTCTACT
CGAGGCAAGCACGACGGGAGCGTGGTGACGGCCGCGGGGGAGATTGTCAG
ACACTTTACATGTGTCAAGCCAGGATTGACGAGCGCGTCGTTCCTGAAGC
CGAATAAGCTGAATAGGGGGACAAGTTTCATGGCGGTGTTGCATCGTCGG
TACGTCGGTCCGGATGCCCCTCTGGAAGCACCAAATCAGGTGTTCGAAGG
GGCCTATGCAAACACCTCTAAAGGAGGACAGAAGGCGATTGAATTTCTTG
GAGAGAAAAAGATTAGGGCCAGGCAACAGATCGGGACATTGACCAAAGTG
TCCATGAGGGGGGAGCATGTCGCGTGGGCGGGGGAGGAAGAGGTGCAGGA
GGCATCTCACCTAGTCGAAGTGGATGTCCAAGGTAATTTGTGGTCAGATT
GGGAAGAGTTGGGGAAACTCGCTCGACAACTGCCACGCTTGGAGATATTG
CATTTGAATAGTAATCTGATGCGCCCGTTACAAGCGCCGGTCGAGGAGGG
GGAGAGTCTGAGAAGGTCGTTCTTGGGTTTGAGAGTGTTAGTGTTGAATA
ACTGTGGGTTGAGTGGGTGGAAAACGGTGATGCACTTGGAAGAGTGTCTG
CCGTGTTTGGAGGAGGTGGGTCTGGCAAGGAATGAGGGGTTGGGTGGGGA
AAAGGGGGGAAGGGAGAAGATGAAGGAGGCGATTGAGGCACGGAGAGAAC
GGACGGAGGGAGGAGGGGGATTGCATGCGTTGTTTCATAAGTTGAAGAGT
TTGGATTTGTCAGGGACTGGATTGGGGGACTGGAGGGAGGAGGTAGCATT
ATTTATGGGCCTGCCGGAGTTGAAAATTCTCAGTTTGAATGAGAATGAGA
TTGAGGGGGTGGGGTCGGGCGAAGAAGGAGGAGGAGGAGGAGGAGCAGCA
GCAGCAACAACAGCAACATCCTCTCCCTACGGCTTCAAAAATCTCCAAGC
CATCCACCTTAGCTACAACCGTATCTCCTCCTGGTCCTCCATCGATGCCC
TCACCCACTTTCCCTCCCTGACATCCTTGCGTTTCGCTTCGAACCCTCTC
ACCAGAGGGATGGGACAAGGTGAAGCCCGCCAGCTCCTGATCGCACGCGT
TCCCACACTGACGAGAGTCAATGGAGCGGAGATCTCAGTGAAAGAAAGAA
TCGACGCAGAAAGGAGCTACATTAGGAGAGTTAACAGGGAGTTGAATCGA
GTGGAGGGAGAGAAAGGAGGAGGGAGTCAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAAGAGTGGCTACAAACTTGACACAGACGAAAGCAGCATATTTGA
AAAAAGAGCACCCGCGATGGTTATCACTGGTGCAACAACACGGTGAAATT
GCGAGTTGGGCAGTGGGAGGGGAGGGCGGAGGGGCAGGGGTAGGAACAGG
GACATTGGCAAAGGGGATGATGTTGGTAACGTTAGTGAGCATGGCGTCGG
GGTCCATGACCTTGCCTCCGGTGGAGAAAAAAATCCCGGGGACTCTAACG
GTCGGGCAGTTGAAGTTACTGTTTAGTAAGTTGTTCAAGTTGGAGGTGGG
GTTGCAGGTGTTGTACTACAAGAGCGATGCGAGGGCCCCCCCCAGCGTGC
TGGATGAGGACGAGGAGAGCTTGGGGTATTTCGGCTTGACAAGTGGAAGT
GTGATTTATATGAATGAACGGGACTTGAGGCAGGAGGCGAGGGAGGATGA
AAGCCGCAGGGAGGCGGAGAGGGAGAGGATGGAGGCACAGTTGGAGCAGG
TGGAAAGATTAGACCGATTGAAACGGGCACAGATTGGCTTGGAGAAGCAG
GGCGCAGCGGCTCGTTAG
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Synonyms
Publications