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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:1091006..1092973 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G04090.1 vs.
Match: EWM29341.1 (tubulin-specific chaperone [Nannochloropsis gaditana]) HSP 1 Score: 726.9 bits (1875), Expect = 5.700e-206 Identity = 401/649 (61.79%), Postives = 474/649 (73.04%), Query Frame = 0
Query: 8 DFCLGQRVVDDEGNRGTVRYLGPVASAKDPTAAWVGVEWDDSTRGKHDGSVVTAAGEIVRHFTCVKPGLTSASFLKPNKLNRGTSFMAVLHRRYVGPDAPLEAPNQVFEGAYANTSKGGQKAIEFLGEKKIRARQQIGTLTKVSMRGEHVAWAGEEEV-QEASHLVEVDVQGNLWSDWEELGKLARQLPRLEILHLNSNLMRPLQAPVEEGESLRRSFLGLRVLVLNNCGLSGWKTVMHLEECLPCLEEVGLARNEGLGGEKGGREKMKEAIEARRERTEGGGGLHALFHKLKSLDLSGTGLGDWREEVALFMGLPELKILSLNENEIEGVGSGEEGGGGGGAAAATTATSSPYGFKNLQAIHLSYNRISSWSSIDALTHFPSLTSLRFASNPLTRGMGQGEARQLLIARVPTLTRVNGAEISVKERIDAERSYIRRVNRELNRVEGEKGGGSQGGREGGREGRVATNLTQTKAAY-LKKEHPRWLSLVQQHGEIASWAVGGEGGGAGVGTGTLAKGMMLVTLVSMASGSMTLPPVEKKIPGTLTVGQLKLLFSKLFKLEVGLQVLYYKSDARAPPSVLDEDEESLGYFGLTSGSVIYMNERDLRQEAREDESRREAERERMEAQLEQVERLDRLKRAQIGLEKQGAAA 655
DF LGQRV D+EGNRGTVRYLGPVASAKDP AAWVGVEWDD RGKHDGSVVT AG+I RHF+C+KPG T ASFLKPNKL+RG S MAVLH+RYV PDAPLEAPNQVFE AYANTS+GGQK IEF GE +IRARQQIG L KVS+RGE VAWAGEEEV +EASHLVEVD+QGNLWSDWEELG++ARQ+PRLE LHLNSNLMRPL+ P LR SF LRVL+LN+CGLS W TV+H+EEC+P L E+GLARN LGG+ G A RR R+E +HA F++L+ LDLSGTGL DW +EVA LP L+ L+LNEN + + +G G AT S GF+ L+A+ LS N + SWS +DAL P L SLRFA NPLTRGMGQGEARQLLIAR+ L R+NG+E+S KER DAE+SY+RRV RE R G G +G E L++ + + LK EHPRW L++QHGE G E G G G+LA+ M+LV LVSMA GS+T PVE+K+PG+LTVGQLKLL +LFKLE +Q L K+D +APPS+L DEE+L Y G TSG I+MNERDL+QEARE ESR A RERM AQ E+ ER++R++R ++ EKQ A
Sbjct: 9 DFSLGQRVADEEGNRGTVRYLGPVASAKDPEAAWVGVEWDDPGRGKHDGSVVTTAGKIHRHFSCLKPGPTCASFLKPNKLDRGVSLMAVLHKRYVVPDAPLEAPNQVFENAYANTSRGGQKKIEFHGETQIRARQQIGRLEKVSLRGERVAWAGEEEVKEEASHLVEVDLQGNLWSDWEELGRMARQMPRLENLHLNSNLMRPLETPAT--PELRGSFQALRVLILNSCGLSSWATVLHVEECVPGLVELGLARN-ALGGQDLG-----TAWARRRARSE----IHAPFYRLQRLDLSGTGLRDWEDEVAFLKTLPSLRALNLNENLLVEIPAGTVQTHG--------ATHSALGFQALEALDLSCNLVESWSCLDALNLLPRLHSLRFAGNPLTRGMGQGEARQLLIARMGALRRLNGSEVSTKERADAEKSYLRRVAREWGRRRGSGDGQGEGANE--------VMLSEEECIHQLKLEHPRWWPLMEQHGESVGGGNGVERGDGASGLGSLAREMVLVRLVSMAPGSITQGPVERKLPGSLTVGQLKLLCQRLFKLEAAMQTLSLKADPQAPPSLLGTDEEALAYCGATSGCEIFMNERDLKQEAREKESRETAARERMLAQAEEAERVERMRRREVAREKQSVVA 629
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G04090.1 ID=NO01G04090.1|Name=NO01G04090.1|organism=Nannochloropsis oceanica|type=mRNA|length=1968bp ATGACGGAGGAGCAGCAGCCGGACTTTTGTCTGGGCCAGCGCGTGGTGGA TGACGAAGGAAACCGGGGTACGGTGCGGTACCTTGGCCCTGTGGCCTCTG CCAAGGATCCAACCGCGGCTTGGGTGGGGGTGGAATGGGACGACTCTACT CGAGGCAAGCACGACGGGAGCGTGGTGACGGCCGCGGGGGAGATTGTCAG ACACTTTACATGTGTCAAGCCAGGATTGACGAGCGCGTCGTTCCTGAAGC CGAATAAGCTGAATAGGGGGACAAGTTTCATGGCGGTGTTGCATCGTCGG TACGTCGGTCCGGATGCCCCTCTGGAAGCACCAAATCAGGTGTTCGAAGG GGCCTATGCAAACACCTCTAAAGGAGGACAGAAGGCGATTGAATTTCTTG GAGAGAAAAAGATTAGGGCCAGGCAACAGATCGGGACATTGACCAAAGTG TCCATGAGGGGGGAGCATGTCGCGTGGGCGGGGGAGGAAGAGGTGCAGGA GGCATCTCACCTAGTCGAAGTGGATGTCCAAGGTAATTTGTGGTCAGATT GGGAAGAGTTGGGGAAACTCGCTCGACAACTGCCACGCTTGGAGATATTG CATTTGAATAGTAATCTGATGCGCCCGTTACAAGCGCCGGTCGAGGAGGG GGAGAGTCTGAGAAGGTCGTTCTTGGGTTTGAGAGTGTTAGTGTTGAATA ACTGTGGGTTGAGTGGGTGGAAAACGGTGATGCACTTGGAAGAGTGTCTG CCGTGTTTGGAGGAGGTGGGTCTGGCAAGGAATGAGGGGTTGGGTGGGGA AAAGGGGGGAAGGGAGAAGATGAAGGAGGCGATTGAGGCACGGAGAGAAC GGACGGAGGGAGGAGGGGGATTGCATGCGTTGTTTCATAAGTTGAAGAGT TTGGATTTGTCAGGGACTGGATTGGGGGACTGGAGGGAGGAGGTAGCATT ATTTATGGGCCTGCCGGAGTTGAAAATTCTCAGTTTGAATGAGAATGAGA TTGAGGGGGTGGGGTCGGGCGAAGAAGGAGGAGGAGGAGGAGGAGCAGCA GCAGCAACAACAGCAACATCCTCTCCCTACGGCTTCAAAAATCTCCAAGC CATCCACCTTAGCTACAACCGTATCTCCTCCTGGTCCTCCATCGATGCCC TCACCCACTTTCCCTCCCTGACATCCTTGCGTTTCGCTTCGAACCCTCTC ACCAGAGGGATGGGACAAGGTGAAGCCCGCCAGCTCCTGATCGCACGCGT TCCCACACTGACGAGAGTCAATGGAGCGGAGATCTCAGTGAAAGAAAGAA TCGACGCAGAAAGGAGCTACATTAGGAGAGTTAACAGGGAGTTGAATCGA GTGGAGGGAGAGAAAGGAGGAGGGAGTCAGGGAGGGAGGGAGGGAGGGAG GGAGGGAAGAGTGGCTACAAACTTGACACAGACGAAAGCAGCATATTTGA AAAAAGAGCACCCGCGATGGTTATCACTGGTGCAACAACACGGTGAAATT GCGAGTTGGGCAGTGGGAGGGGAGGGCGGAGGGGCAGGGGTAGGAACAGG GACATTGGCAAAGGGGATGATGTTGGTAACGTTAGTGAGCATGGCGTCGG GGTCCATGACCTTGCCTCCGGTGGAGAAAAAAATCCCGGGGACTCTAACG GTCGGGCAGTTGAAGTTACTGTTTAGTAAGTTGTTCAAGTTGGAGGTGGG GTTGCAGGTGTTGTACTACAAGAGCGATGCGAGGGCCCCCCCCAGCGTGC TGGATGAGGACGAGGAGAGCTTGGGGTATTTCGGCTTGACAAGTGGAAGT GTGATTTATATGAATGAACGGGACTTGAGGCAGGAGGCGAGGGAGGATGA AAGCCGCAGGGAGGCGGAGAGGGAGAGGATGGAGGCACAGTTGGAGCAGG TGGAAAGATTAGACCGATTGAAACGGGCACAGATTGGCTTGGAGAAGCAG GGCGCAGCGGCTCGTTAG back to topprotein sequence of NO01G04090.1 >NO01G04090.1-protein ID=NO01G04090.1-protein|Name=NO01G04090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=656bp MTEEQQPDFCLGQRVVDDEGNRGTVRYLGPVASAKDPTAAWVGVEWDDST RGKHDGSVVTAAGEIVRHFTCVKPGLTSASFLKPNKLNRGTSFMAVLHRR YVGPDAPLEAPNQVFEGAYANTSKGGQKAIEFLGEKKIRARQQIGTLTKV SMRGEHVAWAGEEEVQEASHLVEVDVQGNLWSDWEELGKLARQLPRLEIL HLNSNLMRPLQAPVEEGESLRRSFLGLRVLVLNNCGLSGWKTVMHLEECL PCLEEVGLARNEGLGGEKGGREKMKEAIEARRERTEGGGGLHALFHKLKS LDLSGTGLGDWREEVALFMGLPELKILSLNENEIEGVGSGEEGGGGGGAA AATTATSSPYGFKNLQAIHLSYNRISSWSSIDALTHFPSLTSLRFASNPL TRGMGQGEARQLLIARVPTLTRVNGAEISVKERIDAERSYIRRVNRELNR VEGEKGGGSQGGREGGREGRVATNLTQTKAAYLKKEHPRWLSLVQQHGEI ASWAVGGEGGGAGVGTGTLAKGMMLVTLVSMASGSMTLPPVEKKIPGTLT VGQLKLLFSKLFKLEVGLQVLYYKSDARAPPSVLDEDEESLGYFGLTSGS VIYMNERDLRQEAREDESRREAERERMEAQLEQVERLDRLKRAQIGLEKQ GAAAR* back to topmRNA from alignment at chr1:1091006..1092973- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G04090.1 ID=NO01G04090.1|Name=NO01G04090.1|organism=Nannochloropsis oceanica|type=mRNA|length=1968bp|location=Sequence derived from alignment at chr1:1091006..1092973- (Nannochloropsis oceanica) ATGACGGAGGAGCAGCAGCCGGACTTTTGTCTGGGCCAGCGCGTGGTGGA
TGACGAAGGAAACCGGGGTACGGTGCGGTACCTTGGCCCTGTGGCCTCTG
CCAAGGATCCAACCGCGGCTTGGGTGGGGGTGGAATGGGACGACTCTACT
CGAGGCAAGCACGACGGGAGCGTGGTGACGGCCGCGGGGGAGATTGTCAG
ACACTTTACATGTGTCAAGCCAGGATTGACGAGCGCGTCGTTCCTGAAGC
CGAATAAGCTGAATAGGGGGACAAGTTTCATGGCGGTGTTGCATCGTCGG
TACGTCGGTCCGGATGCCCCTCTGGAAGCACCAAATCAGGTGTTCGAAGG
GGCCTATGCAAACACCTCTAAAGGAGGACAGAAGGCGATTGAATTTCTTG
GAGAGAAAAAGATTAGGGCCAGGCAACAGATCGGGACATTGACCAAAGTG
TCCATGAGGGGGGAGCATGTCGCGTGGGCGGGGGAGGAAGAGGTGCAGGA
GGCATCTCACCTAGTCGAAGTGGATGTCCAAGGTAATTTGTGGTCAGATT
GGGAAGAGTTGGGGAAACTCGCTCGACAACTGCCACGCTTGGAGATATTG
CATTTGAATAGTAATCTGATGCGCCCGTTACAAGCGCCGGTCGAGGAGGG
GGAGAGTCTGAGAAGGTCGTTCTTGGGTTTGAGAGTGTTAGTGTTGAATA
ACTGTGGGTTGAGTGGGTGGAAAACGGTGATGCACTTGGAAGAGTGTCTG
CCGTGTTTGGAGGAGGTGGGTCTGGCAAGGAATGAGGGGTTGGGTGGGGA
AAAGGGGGGAAGGGAGAAGATGAAGGAGGCGATTGAGGCACGGAGAGAAC
GGACGGAGGGAGGAGGGGGATTGCATGCGTTGTTTCATAAGTTGAAGAGT
TTGGATTTGTCAGGGACTGGATTGGGGGACTGGAGGGAGGAGGTAGCATT
ATTTATGGGCCTGCCGGAGTTGAAAATTCTCAGTTTGAATGAGAATGAGA
TTGAGGGGGTGGGGTCGGGCGAAGAAGGAGGAGGAGGAGGAGGAGCAGCA
GCAGCAACAACAGCAACATCCTCTCCCTACGGCTTCAAAAATCTCCAAGC
CATCCACCTTAGCTACAACCGTATCTCCTCCTGGTCCTCCATCGATGCCC
TCACCCACTTTCCCTCCCTGACATCCTTGCGTTTCGCTTCGAACCCTCTC
ACCAGAGGGATGGGACAAGGTGAAGCCCGCCAGCTCCTGATCGCACGCGT
TCCCACACTGACGAGAGTCAATGGAGCGGAGATCTCAGTGAAAGAAAGAA
TCGACGCAGAAAGGAGCTACATTAGGAGAGTTAACAGGGAGTTGAATCGA
GTGGAGGGAGAGAAAGGAGGAGGGAGTCAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAAGAGTGGCTACAAACTTGACACAGACGAAAGCAGCATATTTGA
AAAAAGAGCACCCGCGATGGTTATCACTGGTGCAACAACACGGTGAAATT
GCGAGTTGGGCAGTGGGAGGGGAGGGCGGAGGGGCAGGGGTAGGAACAGG
GACATTGGCAAAGGGGATGATGTTGGTAACGTTAGTGAGCATGGCGTCGG
GGTCCATGACCTTGCCTCCGGTGGAGAAAAAAATCCCGGGGACTCTAACG
GTCGGGCAGTTGAAGTTACTGTTTAGTAAGTTGTTCAAGTTGGAGGTGGG
GTTGCAGGTGTTGTACTACAAGAGCGATGCGAGGGCCCCCCCCAGCGTGC
TGGATGAGGACGAGGAGAGCTTGGGGTATTTCGGCTTGACAAGTGGAAGT
GTGATTTATATGAATGAACGGGACTTGAGGCAGGAGGCGAGGGAGGATGA
AAGCCGCAGGGAGGCGGAGAGGGAGAGGATGGAGGCACAGTTGGAGCAGG
TGGAAAGATTAGACCGATTGAAACGGGCACAGATTGGCTTGGAGAAGCAG
GGCGCAGCGGCTCGTTAG back to topCoding sequence (CDS) from alignment at chr1:1091006..1092973- >NO01G04090.1 ID=NO01G04090.1|Name=NO01G04090.1|organism=Nannochloropsis oceanica|type=CDS|length=1968bp|location=Sequence derived from alignment at chr1:1091006..1092973- (Nannochloropsis oceanica) ATGACGGAGGAGCAGCAGCCGGACTTTTGTCTGGGCCAGCGCGTGGTGGA TGACGAAGGAAACCGGGGTACGGTGCGGTACCTTGGCCCTGTGGCCTCTG CCAAGGATCCAACCGCGGCTTGGGTGGGGGTGGAATGGGACGACTCTACT CGAGGCAAGCACGACGGGAGCGTGGTGACGGCCGCGGGGGAGATTGTCAG ACACTTTACATGTGTCAAGCCAGGATTGACGAGCGCGTCGTTCCTGAAGC CGAATAAGCTGAATAGGGGGACAAGTTTCATGGCGGTGTTGCATCGTCGG TACGTCGGTCCGGATGCCCCTCTGGAAGCACCAAATCAGGTGTTCGAAGG GGCCTATGCAAACACCTCTAAAGGAGGACAGAAGGCGATTGAATTTCTTG GAGAGAAAAAGATTAGGGCCAGGCAACAGATCGGGACATTGACCAAAGTG TCCATGAGGGGGGAGCATGTCGCGTGGGCGGGGGAGGAAGAGGTGCAGGA GGCATCTCACCTAGTCGAAGTGGATGTCCAAGGTAATTTGTGGTCAGATT GGGAAGAGTTGGGGAAACTCGCTCGACAACTGCCACGCTTGGAGATATTG CATTTGAATAGTAATCTGATGCGCCCGTTACAAGCGCCGGTCGAGGAGGG GGAGAGTCTGAGAAGGTCGTTCTTGGGTTTGAGAGTGTTAGTGTTGAATA ACTGTGGGTTGAGTGGGTGGAAAACGGTGATGCACTTGGAAGAGTGTCTG CCGTGTTTGGAGGAGGTGGGTCTGGCAAGGAATGAGGGGTTGGGTGGGGA AAAGGGGGGAAGGGAGAAGATGAAGGAGGCGATTGAGGCACGGAGAGAAC GGACGGAGGGAGGAGGGGGATTGCATGCGTTGTTTCATAAGTTGAAGAGT TTGGATTTGTCAGGGACTGGATTGGGGGACTGGAGGGAGGAGGTAGCATT ATTTATGGGCCTGCCGGAGTTGAAAATTCTCAGTTTGAATGAGAATGAGA TTGAGGGGGTGGGGTCGGGCGAAGAAGGAGGAGGAGGAGGAGGAGCAGCA GCAGCAACAACAGCAACATCCTCTCCCTACGGCTTCAAAAATCTCCAAGC CATCCACCTTAGCTACAACCGTATCTCCTCCTGGTCCTCCATCGATGCCC TCACCCACTTTCCCTCCCTGACATCCTTGCGTTTCGCTTCGAACCCTCTC ACCAGAGGGATGGGACAAGGTGAAGCCCGCCAGCTCCTGATCGCACGCGT TCCCACACTGACGAGAGTCAATGGAGCGGAGATCTCAGTGAAAGAAAGAA TCGACGCAGAAAGGAGCTACATTAGGAGAGTTAACAGGGAGTTGAATCGA GTGGAGGGAGAGAAAGGAGGAGGGAGTCAGGGAGGGAGGGAGGGAGGGAG GGAGGGAAGAGTGGCTACAAACTTGACACAGACGAAAGCAGCATATTTGA AAAAAGAGCACCCGCGATGGTTATCACTGGTGCAACAACACGGTGAAATT GCGAGTTGGGCAGTGGGAGGGGAGGGCGGAGGGGCAGGGGTAGGAACAGG GACATTGGCAAAGGGGATGATGTTGGTAACGTTAGTGAGCATGGCGTCGG GGTCCATGACCTTGCCTCCGGTGGAGAAAAAAATCCCGGGGACTCTAACG GTCGGGCAGTTGAAGTTACTGTTTAGTAAGTTGTTCAAGTTGGAGGTGGG GTTGCAGGTGTTGTACTACAAGAGCGATGCGAGGGCCCCCCCCAGCGTGC TGGATGAGGACGAGGAGAGCTTGGGGTATTTCGGCTTGACAAGTGGAAGT GTGATTTATATGAATGAACGGGACTTGAGGCAGGAGGCGAGGGAGGATGA AAGCCGCAGGGAGGCGGAGAGGGAGAGGATGGAGGCACAGTTGGAGCAGG TGGAAAGATTAGACCGATTGAAACGGGCACAGATTGGCTTGGAGAAGCAG GGCGCAGCGGCTCGTTAG back to top
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