NO01G04070.1, NO01G04070.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G04070.1
Unique NameNO01G04070.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1459
Alignment locationchr1:1087522..1089477 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1087522..1089477 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO01G04070.1 vs.
Match: EWM29343.1 (caib baif -transferase family protein c7orf10-like isoform 1 [Nannochloropsis gaditana])

HSP 1 Score: 673.3 bits (1736), Expect = 5.100e-190
Identity = 332/439 (75.63%), Postives = 368/439 (83.83%), Query Frame = 0
Query:   12 LLRGTAACRTAPRQPPPLPQRSQPLSTTSPTP--------GPLQGLRVLDLTRVLAGPFATMALGDLGADVIKIEHPQRGDDTRAWGPPFVGGESAYFLSVNRNKRSVGVDFKQSEGLEIVRRLASESDVLIENFLPGKLEKAGLGYDVLSELNPRLIYCSITGFGSDGIAAQRPGYDVIMQGMYGLMSITGSPSDEGGEPAKTGVAMVDLATGLFAHGAILAALHGRHQTGRGQKIDCSLMETQLACLVNIGQNWLLGATTEAKRWGTAHESIVPYQAFKCKDGKYMIGAGNDKQFEKLAVAVGMPELSQDPRFRTNKDRTEHRKILINLLQTFFSTKTRVELDAIFKAMGGLPYGPLRNIGEAFQDAQAQHRKMVVKVPHPTIGELPLAGLPVKYSSTKPSIRRAPPLLGQHTEEVLQECLGYTVDDVQRLRKAKIV 443
            L R     RT   QPP L    Q  + T+ T         GPL GLRVLDLTRVLAGPFATMALGDLGADVIKIEHP RGDDTR WGPPF+ GE+AY+L VNRNKRSV VDFK+ +GLEI+RRLA++SDV IENFLPGKLE  GLGY  LSELNP LIYCSITG+GSDG AA RPGYDVI QGMYGLMSITGSPSDEGGEPAKTGVAMVDLATGLFAHGAILAALH RH+TGRGQK+DCSLMETQLACLVNIGQNWL+GAT EAK WGTAHESIVPYQAF CKDGKYM+GAGNDKQFEKLA AVGMP+L  DPRF TN+DR ++RK LI +L+T+F TKTR ELD +F+A+GGLP GPLRNIGEAFQD QAQHR MVVKV HPTIG+LPLAG+PVKYS TKPSIR APPLLGQ T++VLQ  L YT ++V+ + + K++
Sbjct:   13 LWRCRGRIRTRHFQPPHLSAMLQRAALTTMTETANMATNKGPLDGLRVLDLTRVLAGPFATMALGDLGADVIKIEHPGRGDDTRHWGPPFIQGEAAYYLCVNRNKRSVAVDFKRPKGLEILRRLAAKSDVFIENFLPGKLESVGLGYQALSELNPGLIYCSITGYGSDGPAAHRPGYDVITQGMYGLMSITGSPSDEGGEPAKTGVAMVDLATGLFAHGAILAALHSRHRTGRGQKVDCSLMETQLACLVNIGQNWLVGATKEAKTWGTAHESIVPYQAFSCKDGKYMVGAGNDKQFEKLANAVGMPQLCNDPRFGTNRDRAQNRKALIGILETYFLTKTRTELDELFEAIGGLPCGPLRNIGEAFQDEQAQHRGMVVKVAHPTIGDLPLAGIPVKYSGTKPSIRSAPPLLGQDTKDVLQSFLKYTAEEVEEMEREKVI 451          
The following BLAST results are available for this feature:
BLAST of NO01G04070.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29343.15.100e-19075.63caib baif -transferase family protein c7orf10-like... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G04070NO01G04070Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G04070.1NO01G04070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G04070.1.cds1NO01G04070.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G04070.1.cds2NO01G04070.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G04070.1.cds3NO01G04070.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G04070.1.cds4NO01G04070.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G04070.1.cds5NO01G04070.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G04070.1 ID=NO01G04070.1|Name=NO01G04070.1|organism=Nannochloropsis oceanica|type=mRNA|length=1459bp
AGTCGCACACACATGAAGCGGAAACAAGGTTATGGCCTCGCAGTGCTGCT
GCGCGGAACGGCGGCGTGCCGTACAGCTCCAAGACAACCTCCTCCCCTGC
CCCAGCGGTCCCAACCCCTATCTACTACTAGCCCCACTCCTGGCCCCCTG
CAAGGCCTGCGGGTTTTAGACTTGACGCGCGTGCTGGCAGGCCCCTTTGC
GACCATGGCGTTGGGCGATTTGGGCGCGGATGTAATTAAGATCGAGCATC
CGCAGCGTGGGGACGACACCCGGGCTTGGGGGCCGCCTTTTGTGGGAGGA
GAGAGTGCGTACTTCTTGAGCGTAAACCGGAACAAACGAAGCGTCGGCGT
GGATTTCAAGCAATCCGAGGGCTTGGAGATTGTGCGGCGACTGGCGTCGG
AATCAGATGTGCTAATCGAGAACTTCTTGCCGGGGAAATTGGAGAAAGCT
GGGTTGGGCTATGATGTCCTGAGTGAGCTGAATCCGCGTCTTATCTATTG
CAGCATAACCGGATTTGGCAGTGACGGAATTGCGGCACAACGTCCAGGGT
ATGACGTGATTATGCAGGGAATGTATGGATTGATGAGTATCACGGGCTCG
CCGTCGGACGAGGGTGGTGAGCCTGCCAAGACAGGCGTGGCGATGGTGGA
TCTGGCCACGGGTCTCTTCGCACACGGAGCCATCCTGGCTGCCCTTCACG
GCCGGCATCAGACAGGAAGAGGACAAAAGATTGATTGCTCGTTGATGGAG
ACGCAGTTGGCGTGTTTGGTCAACATTGGACAGAACTGGTTATTGGGGGC
TACGACGGAGGCGAAGAGATGGGGCACGGCCCATGAGAGCATCGTGCCAT
ATCAGGCGTTCAAATGTAAAGACGGGAAGTACATGATAGGCGCAGGCAAC
GACAAACAGTTTGAAAAGCTGGCCGTGGCTGTTGGAATGCCCGAGCTCAG
TCAAGACCCTCGTTTTCGCACCAACAAGGACCGCACTGAGCATCGCAAGA
TTCTCATCAATCTGTTGCAGACTTTTTTTAGCACCAAGACACGCGTGGAG
CTTGATGCCATATTTAAGGCAATGGGCGGCCTGCCTTATGGACCGCTCCG
CAATATAGGCGAAGCCTTTCAGGACGCCCAAGCCCAACATCGCAAAATGG
TGGTAAAGGTACCGCACCCTACCATCGGTGAGCTGCCCCTTGCCGGCTTG
CCTGTCAAATATTCTAGCACTAAGCCTTCCATCCGCCGGGCGCCGCCTTT
GCTGGGCCAACACACTGAAGAGGTGCTGCAGGAGTGCCTGGGGTACACGG
TTGATGACGTGCAGCGCTTGAGGAAGGCCAAAATCGTATGTTAACTTTTC
CGATTCAGATGACTGAAAGCATGAGTAGGCAAAGAGGATAAGGAAATGTG
AGGGAATTGTACAGGGAGCAGCAGAGAAACAATAGGAGGGCGAGTAAAAT
GAAAAAGAT
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protein sequence of NO01G04070.1

>NO01G04070.1-protein ID=NO01G04070.1-protein|Name=NO01G04070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=444bp
MKRKQGYGLAVLLRGTAACRTAPRQPPPLPQRSQPLSTTSPTPGPLQGLR
VLDLTRVLAGPFATMALGDLGADVIKIEHPQRGDDTRAWGPPFVGGESAY
FLSVNRNKRSVGVDFKQSEGLEIVRRLASESDVLIENFLPGKLEKAGLGY
DVLSELNPRLIYCSITGFGSDGIAAQRPGYDVIMQGMYGLMSITGSPSDE
GGEPAKTGVAMVDLATGLFAHGAILAALHGRHQTGRGQKIDCSLMETQLA
CLVNIGQNWLLGATTEAKRWGTAHESIVPYQAFKCKDGKYMIGAGNDKQF
EKLAVAVGMPELSQDPRFRTNKDRTEHRKILINLLQTFFSTKTRVELDAI
FKAMGGLPYGPLRNIGEAFQDAQAQHRKMVVKVPHPTIGELPLAGLPVKY
SSTKPSIRRAPPLLGQHTEEVLQECLGYTVDDVQRLRKAKIVC*
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mRNA from alignment at chr1:1087522..1089477+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G04070.1 ID=NO01G04070.1|Name=NO01G04070.1|organism=Nannochloropsis oceanica|type=mRNA|length=1956bp|location=Sequence derived from alignment at chr1:1087522..1089477+ (Nannochloropsis oceanica)
AGTCGCACACACATGAAGCGGAAACAAGGTTATGGCCTCGCAGTGCTGCT GCGCGGAACGGCGGCGTGCCGTACAGCTCCAAGACAACCTCCTCCCCTGC CCCAGCGGTCCCAACCCCTATCTACTACTAGCCCCACTCCTGGCCCCCTG CAAGGCCTGCGGGTTTTAGACTTGACGCGCGTGCTGGCAGGCCCCTTTGC GACCATGGCGTTGGGCGATTTGGGCGCGGATGTAATTAAGATCGAGCATC CGCAGCGTGGGGACGACACCCGGGCTTGGGGGCCGCCTTTTGTGGGAGGA GAGAGTGCGTACTTCTTGAGCGTAAACCGGAACAAACGAAGCGTCGGCGT GGATTTCAAGCAATCCGAGGGCTTGGAGATTGTGCGGCGACTGGCGTCGG AATCAGATGTGCTAATCGAGAACTTCTTGCCGGGGAAATTGGAGAAAGCT GGGTTGGGCTATGATGTCCTGAGTGAGCTGAATCCGCGTCTTATCTATTG CAGCATAACCGGATTTGGCAGTGACGGAATTGCGGCACAACGTCCAGGGT ATGACGTGATTATGCAGGGAATGTATGGATTGATGAGTATCACGGGCTCG CCGTCGGACGAGGGTGGTGAGCCTGCCAAGACAGGTGTGTACGTAGGGTA GGGGGTTATTTCTCTTCTCATTTTAAACGCGAAACCTACCCCAAAAGACT CACTCCTTCCCTTCTCGCCTCTTCTATCACAATCTACACAAACATGCAGG CGTGGCGATGGTGGATCTGGCCACGGGTCTCTTCGCACACGGAGCCATCC TGGCTGCCCTTCACGGCCGGCATCAGACAGGAAGAGGACAAAAGATTGAT TGCTCGTTGATGGAGACGCAGTTGGCGTGTTTGGTCAACATTGGACAGAA CTGGTTATTGGGGGCTACGACGGAGGCGAAGAGATGGTGAGAAAGACGTG GTAAATGCGTGAGTGGATGGTCGCTGGAGGGGCCAGAGATACAGGGACAG ATTTAAAATGGACTATTCTATAATATTTAGCATGCACGATTATAAATGCG ATCTATTTCTCCGCAGGGGCACGGCCCATGAGAGCATCGTGCCATATCAG GCGTTCAAATGTAAAGACGGGAAGTACATGATAGGCGCAGGCAACGACAA ACAGGTCAGACGGGGGGCAACAGCTAGGAAAGAGGAGGATATGTATACGG TTTCCTACGCTTACTTCTTTTCCTCCATCTCGCCCTTTTTCAGTTTGAAA AGCTGGCCGTGGCTGTTGGAATGCCCGAGCTCAGTCAAGACCCTCGTTTT CGCACCAACAAGGACCGCACTGAGCATCGCAAGATTCTCATCAATCTGTT GCAGACTTTTTTTAGCACCAAGACACGCGTGGAGCTTGATGCCATATTTA AGGTACGCCCACGACTGGAAGGGTGAAAGGGTAGATATTCCTTTCTCCTT TCATTTTCCATCTCTTGATCACCGGCATCACCATATTTCCATCCGCCCCC TCCTCTTTCTGTCCTCACATACAATTTTGCTTTCATCTCCAACATCATAA TTATCATCACGCTAGGCAATGGGCGGCCTGCCTTATGGACCGCTCCGCAA TATAGGCGAAGCCTTTCAGGACGCCCAAGCCCAACATCGCAAAATGGTGG TAAAGGTACCGCACCCTACCATCGGTGAGCTGCCCCTTGCCGGCTTGCCT GTCAAATATTCTAGCACTAAGCCTTCCATCCGCCGGGCGCCGCCTTTGCT GGGCCAACACACTGAAGAGGTGCTGCAGGAGTGCCTGGGGTACACGGTTG ATGACGTGCAGCGCTTGAGGAAGGCCAAAATCGTATGTTAACTTTTCCGA TTCAGATGACTGAAAGCATGAGTAGGCAAAGAGGATAAGGAAATGTGAGG GAATTGTACAGGGAGCAGCAGAGAAACAATAGGAGGGCGAGTAAAATGAA AAAGAT
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Coding sequence (CDS) from alignment at chr1:1087522..1089477+

>NO01G04070.1 ID=NO01G04070.1|Name=NO01G04070.1|organism=Nannochloropsis oceanica|type=CDS|length=1332bp|location=Sequence derived from alignment at chr1:1087522..1089477+ (Nannochloropsis oceanica)
ATGAAGCGGAAACAAGGTTATGGCCTCGCAGTGCTGCTGCGCGGAACGGC
GGCGTGCCGTACAGCTCCAAGACAACCTCCTCCCCTGCCCCAGCGGTCCC
AACCCCTATCTACTACTAGCCCCACTCCTGGCCCCCTGCAAGGCCTGCGG
GTTTTAGACTTGACGCGCGTGCTGGCAGGCCCCTTTGCGACCATGGCGTT
GGGCGATTTGGGCGCGGATGTAATTAAGATCGAGCATCCGCAGCGTGGGG
ACGACACCCGGGCTTGGGGGCCGCCTTTTGTGGGAGGAGAGAGTGCGTAC
TTCTTGAGCGTAAACCGGAACAAACGAAGCGTCGGCGTGGATTTCAAGCA
ATCCGAGGGCTTGGAGATTGTGCGGCGACTGGCGTCGGAATCAGATGTGC
TAATCGAGAACTTCTTGCCGGGGAAATTGGAGAAAGCTGGGTTGGGCTAT
GATGTCCTGAGTGAGCTGAATCCGCGTCTTATCTATTGCAGCATAACCGG
ATTTGGCAGTGACGGAATTGCGGCACAACGTCCAGGGTATGACGTGATTA
TGCAGGGAATGTATGGATTGATGAGTATCACGGGCTCGCCGTCGGACGAG
GGTGGTGAGCCTGCCAAGACAGGCGTGGCGATGGTGGATCTGGCCACGGG
TCTCTTCGCACACGGAGCCATCCTGGCTGCCCTTCACGGCCGGCATCAGA
CAGGAAGAGGACAAAAGATTGATTGCTCGTTGATGGAGACGCAGTTGGCG
TGTTTGGTCAACATTGGACAGAACTGGTTATTGGGGGCTACGACGGAGGC
GAAGAGATGGGGCACGGCCCATGAGAGCATCGTGCCATATCAGGCGTTCA
AATGTAAAGACGGGAAGTACATGATAGGCGCAGGCAACGACAAACAGTTT
GAAAAGCTGGCCGTGGCTGTTGGAATGCCCGAGCTCAGTCAAGACCCTCG
TTTTCGCACCAACAAGGACCGCACTGAGCATCGCAAGATTCTCATCAATC
TGTTGCAGACTTTTTTTAGCACCAAGACACGCGTGGAGCTTGATGCCATA
TTTAAGGCAATGGGCGGCCTGCCTTATGGACCGCTCCGCAATATAGGCGA
AGCCTTTCAGGACGCCCAAGCCCAACATCGCAAAATGGTGGTAAAGGTAC
CGCACCCTACCATCGGTGAGCTGCCCCTTGCCGGCTTGCCTGTCAAATAT
TCTAGCACTAAGCCTTCCATCCGCCGGGCGCCGCCTTTGCTGGGCCAACA
CACTGAAGAGGTGCTGCAGGAGTGCCTGGGGTACACGGTTGATGACGTGC
AGCGCTTGAGGAAGGCCAAAATCGTATGTTAA
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Synonyms
Publications