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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:1087522..1089477 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G04070.1 vs.
Match: EWM29343.1 (caib baif -transferase family protein c7orf10-like isoform 1 [Nannochloropsis gaditana]) HSP 1 Score: 673.3 bits (1736), Expect = 5.100e-190 Identity = 332/439 (75.63%), Postives = 368/439 (83.83%), Query Frame = 0
Query: 12 LLRGTAACRTAPRQPPPLPQRSQPLSTTSPTP--------GPLQGLRVLDLTRVLAGPFATMALGDLGADVIKIEHPQRGDDTRAWGPPFVGGESAYFLSVNRNKRSVGVDFKQSEGLEIVRRLASESDVLIENFLPGKLEKAGLGYDVLSELNPRLIYCSITGFGSDGIAAQRPGYDVIMQGMYGLMSITGSPSDEGGEPAKTGVAMVDLATGLFAHGAILAALHGRHQTGRGQKIDCSLMETQLACLVNIGQNWLLGATTEAKRWGTAHESIVPYQAFKCKDGKYMIGAGNDKQFEKLAVAVGMPELSQDPRFRTNKDRTEHRKILINLLQTFFSTKTRVELDAIFKAMGGLPYGPLRNIGEAFQDAQAQHRKMVVKVPHPTIGELPLAGLPVKYSSTKPSIRRAPPLLGQHTEEVLQECLGYTVDDVQRLRKAKIV 443
L R RT QPP L Q + T+ T GPL GLRVLDLTRVLAGPFATMALGDLGADVIKIEHP RGDDTR WGPPF+ GE+AY+L VNRNKRSV VDFK+ +GLEI+RRLA++SDV IENFLPGKLE GLGY LSELNP LIYCSITG+GSDG AA RPGYDVI QGMYGLMSITGSPSDEGGEPAKTGVAMVDLATGLFAHGAILAALH RH+TGRGQK+DCSLMETQLACLVNIGQNWL+GAT EAK WGTAHESIVPYQAF CKDGKYM+GAGNDKQFEKLA AVGMP+L DPRF TN+DR ++RK LI +L+T+F TKTR ELD +F+A+GGLP GPLRNIGEAFQD QAQHR MVVKV HPTIG+LPLAG+PVKYS TKPSIR APPLLGQ T++VLQ L YT ++V+ + + K++
Sbjct: 13 LWRCRGRIRTRHFQPPHLSAMLQRAALTTMTETANMATNKGPLDGLRVLDLTRVLAGPFATMALGDLGADVIKIEHPGRGDDTRHWGPPFIQGEAAYYLCVNRNKRSVAVDFKRPKGLEILRRLAAKSDVFIENFLPGKLESVGLGYQALSELNPGLIYCSITGYGSDGPAAHRPGYDVITQGMYGLMSITGSPSDEGGEPAKTGVAMVDLATGLFAHGAILAALHSRHRTGRGQKVDCSLMETQLACLVNIGQNWLVGATKEAKTWGTAHESIVPYQAFSCKDGKYMVGAGNDKQFEKLANAVGMPQLCNDPRFGTNRDRAQNRKALIGILETYFLTKTRTELDELFEAIGGLPCGPLRNIGEAFQDEQAQHRGMVVKVAHPTIGDLPLAGIPVKYSGTKPSIRSAPPLLGQDTKDVLQSFLKYTAEEVEEMEREKVI 451
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G04070.1 ID=NO01G04070.1|Name=NO01G04070.1|organism=Nannochloropsis oceanica|type=mRNA|length=1459bp AGTCGCACACACATGAAGCGGAAACAAGGTTATGGCCTCGCAGTGCTGCT GCGCGGAACGGCGGCGTGCCGTACAGCTCCAAGACAACCTCCTCCCCTGC CCCAGCGGTCCCAACCCCTATCTACTACTAGCCCCACTCCTGGCCCCCTG CAAGGCCTGCGGGTTTTAGACTTGACGCGCGTGCTGGCAGGCCCCTTTGC GACCATGGCGTTGGGCGATTTGGGCGCGGATGTAATTAAGATCGAGCATC CGCAGCGTGGGGACGACACCCGGGCTTGGGGGCCGCCTTTTGTGGGAGGA GAGAGTGCGTACTTCTTGAGCGTAAACCGGAACAAACGAAGCGTCGGCGT GGATTTCAAGCAATCCGAGGGCTTGGAGATTGTGCGGCGACTGGCGTCGG AATCAGATGTGCTAATCGAGAACTTCTTGCCGGGGAAATTGGAGAAAGCT GGGTTGGGCTATGATGTCCTGAGTGAGCTGAATCCGCGTCTTATCTATTG CAGCATAACCGGATTTGGCAGTGACGGAATTGCGGCACAACGTCCAGGGT ATGACGTGATTATGCAGGGAATGTATGGATTGATGAGTATCACGGGCTCG CCGTCGGACGAGGGTGGTGAGCCTGCCAAGACAGGCGTGGCGATGGTGGA TCTGGCCACGGGTCTCTTCGCACACGGAGCCATCCTGGCTGCCCTTCACG GCCGGCATCAGACAGGAAGAGGACAAAAGATTGATTGCTCGTTGATGGAG ACGCAGTTGGCGTGTTTGGTCAACATTGGACAGAACTGGTTATTGGGGGC TACGACGGAGGCGAAGAGATGGGGCACGGCCCATGAGAGCATCGTGCCAT ATCAGGCGTTCAAATGTAAAGACGGGAAGTACATGATAGGCGCAGGCAAC GACAAACAGTTTGAAAAGCTGGCCGTGGCTGTTGGAATGCCCGAGCTCAG TCAAGACCCTCGTTTTCGCACCAACAAGGACCGCACTGAGCATCGCAAGA TTCTCATCAATCTGTTGCAGACTTTTTTTAGCACCAAGACACGCGTGGAG CTTGATGCCATATTTAAGGCAATGGGCGGCCTGCCTTATGGACCGCTCCG CAATATAGGCGAAGCCTTTCAGGACGCCCAAGCCCAACATCGCAAAATGG TGGTAAAGGTACCGCACCCTACCATCGGTGAGCTGCCCCTTGCCGGCTTG CCTGTCAAATATTCTAGCACTAAGCCTTCCATCCGCCGGGCGCCGCCTTT GCTGGGCCAACACACTGAAGAGGTGCTGCAGGAGTGCCTGGGGTACACGG TTGATGACGTGCAGCGCTTGAGGAAGGCCAAAATCGTATGTTAACTTTTC CGATTCAGATGACTGAAAGCATGAGTAGGCAAAGAGGATAAGGAAATGTG AGGGAATTGTACAGGGAGCAGCAGAGAAACAATAGGAGGGCGAGTAAAAT GAAAAAGAT back to topprotein sequence of NO01G04070.1 >NO01G04070.1-protein ID=NO01G04070.1-protein|Name=NO01G04070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=444bp MKRKQGYGLAVLLRGTAACRTAPRQPPPLPQRSQPLSTTSPTPGPLQGLR VLDLTRVLAGPFATMALGDLGADVIKIEHPQRGDDTRAWGPPFVGGESAY FLSVNRNKRSVGVDFKQSEGLEIVRRLASESDVLIENFLPGKLEKAGLGY DVLSELNPRLIYCSITGFGSDGIAAQRPGYDVIMQGMYGLMSITGSPSDE GGEPAKTGVAMVDLATGLFAHGAILAALHGRHQTGRGQKIDCSLMETQLA CLVNIGQNWLLGATTEAKRWGTAHESIVPYQAFKCKDGKYMIGAGNDKQF EKLAVAVGMPELSQDPRFRTNKDRTEHRKILINLLQTFFSTKTRVELDAI FKAMGGLPYGPLRNIGEAFQDAQAQHRKMVVKVPHPTIGELPLAGLPVKY SSTKPSIRRAPPLLGQHTEEVLQECLGYTVDDVQRLRKAKIVC* back to topmRNA from alignment at chr1:1087522..1089477+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G04070.1 ID=NO01G04070.1|Name=NO01G04070.1|organism=Nannochloropsis oceanica|type=mRNA|length=1956bp|location=Sequence derived from alignment at chr1:1087522..1089477+ (Nannochloropsis oceanica) AGTCGCACACACATGAAGCGGAAACAAGGTTATGGCCTCGCAGTGCTGCT
GCGCGGAACGGCGGCGTGCCGTACAGCTCCAAGACAACCTCCTCCCCTGC
CCCAGCGGTCCCAACCCCTATCTACTACTAGCCCCACTCCTGGCCCCCTG
CAAGGCCTGCGGGTTTTAGACTTGACGCGCGTGCTGGCAGGCCCCTTTGC
GACCATGGCGTTGGGCGATTTGGGCGCGGATGTAATTAAGATCGAGCATC
CGCAGCGTGGGGACGACACCCGGGCTTGGGGGCCGCCTTTTGTGGGAGGA
GAGAGTGCGTACTTCTTGAGCGTAAACCGGAACAAACGAAGCGTCGGCGT
GGATTTCAAGCAATCCGAGGGCTTGGAGATTGTGCGGCGACTGGCGTCGG
AATCAGATGTGCTAATCGAGAACTTCTTGCCGGGGAAATTGGAGAAAGCT
GGGTTGGGCTATGATGTCCTGAGTGAGCTGAATCCGCGTCTTATCTATTG
CAGCATAACCGGATTTGGCAGTGACGGAATTGCGGCACAACGTCCAGGGT
ATGACGTGATTATGCAGGGAATGTATGGATTGATGAGTATCACGGGCTCG
CCGTCGGACGAGGGTGGTGAGCCTGCCAAGACAGGTGTGTACGTAGGGTA
GGGGGTTATTTCTCTTCTCATTTTAAACGCGAAACCTACCCCAAAAGACT
CACTCCTTCCCTTCTCGCCTCTTCTATCACAATCTACACAAACATGCAGG
CGTGGCGATGGTGGATCTGGCCACGGGTCTCTTCGCACACGGAGCCATCC
TGGCTGCCCTTCACGGCCGGCATCAGACAGGAAGAGGACAAAAGATTGAT
TGCTCGTTGATGGAGACGCAGTTGGCGTGTTTGGTCAACATTGGACAGAA
CTGGTTATTGGGGGCTACGACGGAGGCGAAGAGATGGTGAGAAAGACGTG
GTAAATGCGTGAGTGGATGGTCGCTGGAGGGGCCAGAGATACAGGGACAG
ATTTAAAATGGACTATTCTATAATATTTAGCATGCACGATTATAAATGCG
ATCTATTTCTCCGCAGGGGCACGGCCCATGAGAGCATCGTGCCATATCAG
GCGTTCAAATGTAAAGACGGGAAGTACATGATAGGCGCAGGCAACGACAA
ACAGGTCAGACGGGGGGCAACAGCTAGGAAAGAGGAGGATATGTATACGG
TTTCCTACGCTTACTTCTTTTCCTCCATCTCGCCCTTTTTCAGTTTGAAA
AGCTGGCCGTGGCTGTTGGAATGCCCGAGCTCAGTCAAGACCCTCGTTTT
CGCACCAACAAGGACCGCACTGAGCATCGCAAGATTCTCATCAATCTGTT
GCAGACTTTTTTTAGCACCAAGACACGCGTGGAGCTTGATGCCATATTTA
AGGTACGCCCACGACTGGAAGGGTGAAAGGGTAGATATTCCTTTCTCCTT
TCATTTTCCATCTCTTGATCACCGGCATCACCATATTTCCATCCGCCCCC
TCCTCTTTCTGTCCTCACATACAATTTTGCTTTCATCTCCAACATCATAA
TTATCATCACGCTAGGCAATGGGCGGCCTGCCTTATGGACCGCTCCGCAA
TATAGGCGAAGCCTTTCAGGACGCCCAAGCCCAACATCGCAAAATGGTGG
TAAAGGTACCGCACCCTACCATCGGTGAGCTGCCCCTTGCCGGCTTGCCT
GTCAAATATTCTAGCACTAAGCCTTCCATCCGCCGGGCGCCGCCTTTGCT
GGGCCAACACACTGAAGAGGTGCTGCAGGAGTGCCTGGGGTACACGGTTG
ATGACGTGCAGCGCTTGAGGAAGGCCAAAATCGTATGTTAACTTTTCCGA
TTCAGATGACTGAAAGCATGAGTAGGCAAAGAGGATAAGGAAATGTGAGG
GAATTGTACAGGGAGCAGCAGAGAAACAATAGGAGGGCGAGTAAAATGAA
AAAGAT back to topCoding sequence (CDS) from alignment at chr1:1087522..1089477+ >NO01G04070.1 ID=NO01G04070.1|Name=NO01G04070.1|organism=Nannochloropsis oceanica|type=CDS|length=1332bp|location=Sequence derived from alignment at chr1:1087522..1089477+ (Nannochloropsis oceanica) ATGAAGCGGAAACAAGGTTATGGCCTCGCAGTGCTGCTGCGCGGAACGGC GGCGTGCCGTACAGCTCCAAGACAACCTCCTCCCCTGCCCCAGCGGTCCC AACCCCTATCTACTACTAGCCCCACTCCTGGCCCCCTGCAAGGCCTGCGG GTTTTAGACTTGACGCGCGTGCTGGCAGGCCCCTTTGCGACCATGGCGTT GGGCGATTTGGGCGCGGATGTAATTAAGATCGAGCATCCGCAGCGTGGGG ACGACACCCGGGCTTGGGGGCCGCCTTTTGTGGGAGGAGAGAGTGCGTAC TTCTTGAGCGTAAACCGGAACAAACGAAGCGTCGGCGTGGATTTCAAGCA ATCCGAGGGCTTGGAGATTGTGCGGCGACTGGCGTCGGAATCAGATGTGC TAATCGAGAACTTCTTGCCGGGGAAATTGGAGAAAGCTGGGTTGGGCTAT GATGTCCTGAGTGAGCTGAATCCGCGTCTTATCTATTGCAGCATAACCGG ATTTGGCAGTGACGGAATTGCGGCACAACGTCCAGGGTATGACGTGATTA TGCAGGGAATGTATGGATTGATGAGTATCACGGGCTCGCCGTCGGACGAG GGTGGTGAGCCTGCCAAGACAGGCGTGGCGATGGTGGATCTGGCCACGGG TCTCTTCGCACACGGAGCCATCCTGGCTGCCCTTCACGGCCGGCATCAGA CAGGAAGAGGACAAAAGATTGATTGCTCGTTGATGGAGACGCAGTTGGCG TGTTTGGTCAACATTGGACAGAACTGGTTATTGGGGGCTACGACGGAGGC GAAGAGATGGGGCACGGCCCATGAGAGCATCGTGCCATATCAGGCGTTCA AATGTAAAGACGGGAAGTACATGATAGGCGCAGGCAACGACAAACAGTTT GAAAAGCTGGCCGTGGCTGTTGGAATGCCCGAGCTCAGTCAAGACCCTCG TTTTCGCACCAACAAGGACCGCACTGAGCATCGCAAGATTCTCATCAATC TGTTGCAGACTTTTTTTAGCACCAAGACACGCGTGGAGCTTGATGCCATA TTTAAGGCAATGGGCGGCCTGCCTTATGGACCGCTCCGCAATATAGGCGA AGCCTTTCAGGACGCCCAAGCCCAACATCGCAAAATGGTGGTAAAGGTAC CGCACCCTACCATCGGTGAGCTGCCCCTTGCCGGCTTGCCTGTCAAATAT TCTAGCACTAAGCCTTCCATCCGCCGGGCGCCGCCTTTGCTGGGCCAACA CACTGAAGAGGTGCTGCAGGAGTGCCTGGGGTACACGGTTGATGACGTGC AGCGCTTGAGGAAGGCCAAAATCGTATGTTAA back to top
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