NO01G04040.1, NO01G04040.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G04040.1
Unique NameNO01G04040.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length966
Alignment locationchr1:1080121..1081449 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1080121..1081449 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO01G04040.1 vs.
Match: EWM29337.1 (nad-dependent deacetylase [Nannochloropsis gaditana])

HSP 1 Score: 441.4 bits (1134), Expect = 2.400e-120
Identity = 223/319 (69.91%), Postives = 260/319 (81.50%), Query Frame = 0
Query:    2 RPSTARGVIFQAFTSTPTPTIRTLSISADAHRVADLLSDCKHVVAITGAGISTESGIPDYRSPTGSFSRGFKPMVHDEFINHQLKRSRYWARSMLGYHRFSEAKPNEGHRALASLEKDLGMLGLLISQNVDGLHQKAGSERVLDLHGRNDRIVCLGCGHETHRRSFQAALEEENRQWVSTYVPSSPAALQMFSDGDVELENVAFEDFVVPACKHCGGVLKPAVVFYGDVVPTPVVEEAFEAIAAADAVLVAGTSLMVYSSWRFVSDASKRGKKIVIVNQGGTRAEKEGIEHVKVEGACGEVLGGAVHLLKERREGRREG 321
            R  +A  VI  AF    T T+  L   AD+ ++A+ L  CK++VA+TGAGISTESGIPDYRSPTGSFSRGFKPMVHDEFI+  +KRSRYWARSMLGYHRFS A+PN+GHRALA+LE D+G LGL+ISQNVDGLHQ+AGS+RVLDLHGRNDRIVCL CG +  RR FQAALEE N+QWV   VP++   L+MFSDGDV+LEN  FEDF VP+CK CGGVLKPAVVFYGDVVP+ VV+EAF A+ AADAVLVAGTSLMVYSSWRFV DA+K+GK I++VNQG TRAE+EG+ H+K+E  CGEVL GAV  L   R  + EG
Sbjct:   39 RARSAGCVILPAFNRMSTTTMSRLC--ADSQKLAEFLDGCKNIVAVTGAGISTESGIPDYRSPTGSFSRGFKPMVHDEFISKPVKRSRYWARSMLGYHRFSRAQPNKGHRALAALENDVGTLGLIISQNVDGLHQRAGSKRVLDLHGRNDRIVCLSCGLQIPRRGFQAALEELNQQWVRQNVPAT--TLEMFSDGDVDLENAVFEDFAVPSCKACGGVLKPAVVFYGDVVPSAVVQEAFAAVDAADAVLVAGTSLMVYSSWRFVLDAAKKGKPILVVNQGQTRAEREGVPHLKIEKGCGEVLEGAVQALLGSRVEQCEG 353          
The following BLAST results are available for this feature:
BLAST of NO01G04040.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29337.12.400e-12069.91nad-dependent deacetylase [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G04040NO01G04040Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G04040.1NO01G04040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G04040.1.cds1NO01G04040.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G04040.1.cds2NO01G04040.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G04040.1.cds3NO01G04040.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G04040.1 ID=NO01G04040.1|Name=NO01G04040.1|organism=Nannochloropsis oceanica|type=mRNA|length=966bp
ATGCGGCCCAGCACGGCCAGAGGCGTCATTTTCCAGGCATTTACATCCAC
ACCGACACCTACAATCCGTACTTTGAGCATCTCGGCCGATGCCCACCGCG
TGGCAGATTTGCTGAGCGATTGCAAGCACGTTGTGGCGATTACCGGCGCT
GGAATCAGCACCGAGAGCGGCATTCCGGATTACCGCTCTCCCACTGGTTC
CTTCTCGCGCGGGTTCAAGCCGATGGTTCACGACGAGTTCATCAACCATC
AATTGAAACGCTCTCGGTACTGGGCACGTTCTATGTTAGGCTATCACCGC
TTTTCGGAGGCCAAGCCGAATGAGGGCCATCGGGCGTTGGCATCTTTGGA
GAAGGACTTGGGGATGCTCGGCTTGTTGATCAGCCAGAATGTAGATGGCC
TGCACCAAAAAGCCGGCTCCGAACGCGTACTCGACCTCCACGGACGCAAC
GACCGCATCGTGTGCTTAGGGTGTGGGCATGAAACACATCGCCGTTCCTT
TCAAGCCGCCCTTGAGGAAGAAAACAGGCAGTGGGTGTCGACCTACGTCC
CGTCCTCCCCTGCCGCCTTACAAATGTTTTCCGACGGCGACGTCGAGTTG
GAAAATGTGGCTTTTGAAGATTTCGTGGTCCCGGCATGTAAGCATTGTGG
GGGGGTGCTAAAGCCAGCGGTTGTTTTTTATGGTGACGTCGTTCCCACCC
CTGTGGTGGAGGAGGCGTTCGAGGCCATAGCGGCGGCGGACGCAGTGCTG
GTGGCAGGGACAAGCCTCATGGTTTATAGCAGTTGGAGATTTGTCTCAGA
TGCATCGAAGAGGGGGAAAAAAATCGTCATTGTCAATCAGGGGGGAACGA
GAGCGGAGAAAGAGGGTATAGAGCATGTGAAGGTGGAGGGGGCATGTGGG
GAGGTGCTGGGGGGGGCAGTACATTTGTTGAAGGAACGGAGGGAGGGAAG
GAGGGAGGGGTGGTAG
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protein sequence of NO01G04040.1

>NO01G04040.1-protein ID=NO01G04040.1-protein|Name=NO01G04040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=322bp
MRPSTARGVIFQAFTSTPTPTIRTLSISADAHRVADLLSDCKHVVAITGA
GISTESGIPDYRSPTGSFSRGFKPMVHDEFINHQLKRSRYWARSMLGYHR
FSEAKPNEGHRALASLEKDLGMLGLLISQNVDGLHQKAGSERVLDLHGRN
DRIVCLGCGHETHRRSFQAALEEENRQWVSTYVPSSPAALQMFSDGDVEL
ENVAFEDFVVPACKHCGGVLKPAVVFYGDVVPTPVVEEAFEAIAAADAVL
VAGTSLMVYSSWRFVSDASKRGKKIVIVNQGGTRAEKEGIEHVKVEGACG
EVLGGAVHLLKERREGRREGW*
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mRNA from alignment at chr1:1080121..1081449-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G04040.1 ID=NO01G04040.1|Name=NO01G04040.1|organism=Nannochloropsis oceanica|type=mRNA|length=1329bp|location=Sequence derived from alignment at chr1:1080121..1081449- (Nannochloropsis oceanica)
ATGCGGCCCAGCACGGCCAGAGGCGTCATTTTCCAGGCATTTACATCCAC ACCGACACCTACAATCCGTACTTTGAGCATCTCGGCCGATGCCCACCGCG TGGCAGATTTGCTGAGCGATTGCAAGCACGTTGTGGCGATTACCGGCGCT GGAATCAGCACCGAGAGCGGCATTCCGGGTGAGTGAGAGCGGGTACGAAC CCGAGATGAATGAGTGAAAGGAAGTGTTCTACCCCCACCCCATCCCCTAC CATCACAACTACCAACATCAACAAAATGCAGAGTTGTAAATCGCAGCTAA CATATCATTCAATCTCCCTCCCTTTTCTTATCTTCGTCTCACCTTCTCCA CCCCCACAAGATTACCGCTCTCCCACTGGTTCCTTCTCGCGCGGGTTCAA GCCGATGGTTCACGACGAGTTCATCAACCATCAATTGAAACGCTCTCGGT ACTGGGCACGTTCTATGTTAGGCTATCACCGCTTTTCGGAGGCCAAGCCG AATGAGGGCCATCGGGCGTTGGCATCTTTGGAGAAGGACTTGGGGATGCT CGGCTTGTTGATCAGCCAGAATGTAGATGTAAGTATTTCCTTGTCTTTCG GGGGGAACAATCGCATTTGTATCATTCAATGAGAAGGAATTAGGGAGGGC AGGGAGAAACAATTTCTCTCTCTATCTTTCTCTCTCTTCGCTGCCTGACC ATCCGACTCTCATCACTTCTTTCCTTTTGTCGCCTTTCCCATTTCCCCCC ATCCAACAGGGCCTGCACCAAAAAGCCGGCTCCGAACGCGTACTCGACCT CCACGGACGCAACGACCGCATCGTGTGCTTAGGGTGTGGGCATGAAACAC ATCGCCGTTCCTTTCAAGCCGCCCTTGAGGAAGAAAACAGGCAGTGGGTG TCGACCTACGTCCCGTCCTCCCCTGCCGCCTTACAAATGTTTTCCGACGG CGACGTCGAGTTGGAAAATGTGGCTTTTGAAGATTTCGTGGTCCCGGCAT GTAAGCATTGTGGGGGGGTGCTAAAGCCAGCGGTTGTTTTTTATGGTGAC GTCGTTCCCACCCCTGTGGTGGAGGAGGCGTTCGAGGCCATAGCGGCGGC GGACGCAGTGCTGGTGGCAGGGACAAGCCTCATGGTTTATAGCAGTTGGA GATTTGTCTCAGATGCATCGAAGAGGGGGAAAAAAATCGTCATTGTCAAT CAGGGGGGAACGAGAGCGGAGAAAGAGGGTATAGAGCATGTGAAGGTGGA GGGGGCATGTGGGGAGGTGCTGGGGGGGGCAGTACATTTGTTGAAGGAAC GGAGGGAGGGAAGGAGGGAGGGGTGGTAG
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Coding sequence (CDS) from alignment at chr1:1080121..1081449-

>NO01G04040.1 ID=NO01G04040.1|Name=NO01G04040.1|organism=Nannochloropsis oceanica|type=CDS|length=966bp|location=Sequence derived from alignment at chr1:1080121..1081449- (Nannochloropsis oceanica)
ATGCGGCCCAGCACGGCCAGAGGCGTCATTTTCCAGGCATTTACATCCAC
ACCGACACCTACAATCCGTACTTTGAGCATCTCGGCCGATGCCCACCGCG
TGGCAGATTTGCTGAGCGATTGCAAGCACGTTGTGGCGATTACCGGCGCT
GGAATCAGCACCGAGAGCGGCATTCCGGATTACCGCTCTCCCACTGGTTC
CTTCTCGCGCGGGTTCAAGCCGATGGTTCACGACGAGTTCATCAACCATC
AATTGAAACGCTCTCGGTACTGGGCACGTTCTATGTTAGGCTATCACCGC
TTTTCGGAGGCCAAGCCGAATGAGGGCCATCGGGCGTTGGCATCTTTGGA
GAAGGACTTGGGGATGCTCGGCTTGTTGATCAGCCAGAATGTAGATGGCC
TGCACCAAAAAGCCGGCTCCGAACGCGTACTCGACCTCCACGGACGCAAC
GACCGCATCGTGTGCTTAGGGTGTGGGCATGAAACACATCGCCGTTCCTT
TCAAGCCGCCCTTGAGGAAGAAAACAGGCAGTGGGTGTCGACCTACGTCC
CGTCCTCCCCTGCCGCCTTACAAATGTTTTCCGACGGCGACGTCGAGTTG
GAAAATGTGGCTTTTGAAGATTTCGTGGTCCCGGCATGTAAGCATTGTGG
GGGGGTGCTAAAGCCAGCGGTTGTTTTTTATGGTGACGTCGTTCCCACCC
CTGTGGTGGAGGAGGCGTTCGAGGCCATAGCGGCGGCGGACGCAGTGCTG
GTGGCAGGGACAAGCCTCATGGTTTATAGCAGTTGGAGATTTGTCTCAGA
TGCATCGAAGAGGGGGAAAAAAATCGTCATTGTCAATCAGGGGGGAACGA
GAGCGGAGAAAGAGGGTATAGAGCATGTGAAGGTGGAGGGGGCATGTGGG
GAGGTGCTGGGGGGGGCAGTACATTTGTTGAAGGAACGGAGGGAGGGAAG
GAGGGAGGGGTGGTAG
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Synonyms
Publications