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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:1061780..1064129 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G03980.1 vs.
Match: EWM29314.1 (u3 small nucleolar ribonucleoprotein mpp10, partial [Nannochloropsis gaditana]) HSP 1 Score: 429.5 bits (1103), Expect = 2.100e-116 Identity = 286/460 (62.17%), Postives = 341/460 (74.13%), Query Frame = 0
Query: 279 FNDDEEDESDDDDEEEEEEEDGKEIRYQDFWGNEEEDEEEPKGEEKGGDSKSGAFVTSSKEGKRKLSNRSRQAHDEAEDGDEEEEEEEEEEEEEEEEEEEEEEEKEDEDPKTLTSFQRQQRTKRKEIAELEHELLSERPWELRGEVKAGDRPENSLLEAVVDVELARRPEVLMTVEKGQSIEQMIKQRVMEERWDDVVPKTLGEEVMMNGRRRGREGEEELPEVSQEKSTEGLGAIYEKEYMRLAMGQGGGEGGEKETKETREKIEMAALFRLVCGKLDALSNFNFVPKAAQVEMTVQANVPAIAMEEVLPLAVGHADTQAPEEVHGKKRGREGVLREAAELDQADRNRIRRDKKAARRKARKQAATEEKLVNRINPGLGNKYAKEKMRSEIKASGKVVQGTLEAASQQGAYSTSGKFFAGLQEEVSAHGGAYAKRKVTEKGQETAKELARTAGGNRLKL 739
F D +E E + +EEE+EEE+ +E EEE+EE + EE+G D + +L R+ E E GD +E EEE +E LTSFQ++QR +RKEIAELE ELLSERPWELRGEVKA +RPENSLLEAVVDVELARRPEVLMTVE+ QS+E+MIK RV E RWDDVVP+ LGEEVMMN RRG + EELPEVSQEK+ EGLG +YEKEY+RLAMGQ G ETKE++EK E+AALFR + KLDALSNFNF PKAA VE++VQ+NVPAIAMEEVLP+AVG T APEEVHGKKRGREGV+RE+AE+DQ DR R+RR KKAARRKAR+Q E++LV+R+NPGLGNKYAKEK++SEI++SGKVV GT ++ SQ+GAYSTSGKFFAGLQEEVS HGGAYAK++ T G E+ K+ + GGN LKL
Sbjct: 2 FGDRDEAEGEKGEEEEDEEEEEEE--------EEEEEEEGVEEEEEGNDLE-------------RLDGMGREKGKEREGGDSRSGARRRQEGEEEVAQEG-----------LLTSFQKEQRARRKEIAELERELLSERPWELRGEVKATERPENSLLEAVVDVELARRPEVLMTVERSQSLEEMIKARVAEGRWDDVVPQALGEEVMMN--RRGHK--EELPEVSQEKAGEGLGEVYEKEYLRLAMGQEG------ETKESKEKAELAALFRKLSAKLDALSNFNFTPKAAHVEVSVQSNVPAIAMEEVLPMAVGQGSTLAPEEVHGKKRGREGVVRESAEMDQGDRRRLRRGKKAARRKARRQKTAEDRLVHRLNPGLGNKYAKEKLQSEIRSSGKVVLGTKDSGSQKGAYSTSGKFFAGLQEEVSKHGGAYAKQRST--GLESEKK--KFKGGNALKL 415
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G03980.1 ID=NO01G03980.1|Name=NO01G03980.1|organism=Nannochloropsis oceanica|type=mRNA|length=2247bp ACAGACCTTACAAACACACGTCAAAGCACCATGACAAGAAAGAATAAAAT ACAAGCAGTAAATAGAGATGACAGCGGCGACAACACAGGCGAGGCAGTGC GTATGGTCAACTCCAGCTCTAGTACTGGGCCCGTTGACCTCCCCCTCAGC ACCATCGAAGGAGCCTTGGCGCGGCTCGAGTACCTGGCAGACGCCCCCGA AAGCTTTTGTGCACCGCCATCAGATATAGCAGAGAGCCTCACTCAAGTGC TTAAGACCGTCTTCGACCATGCCCGGAAGACTCAGCCCATCAAACTCGGG CCTCTACAAGAGTTGTTTGTAGAGGGGTTTGATACCGAGACGCTATGGGA GCAGCTGCAGTTGCGGAACCCGGCCGTACGGAAGTTGGTGGTGAAAGTGA CGAGAAGGCTCATGGAGAAAGAGAAGGAGGAGGGAGGGGCAACAATGATG TTTGAAAAGGAGGAAGAGGATATAGAGGAGAGGAAAGAGAACAAGAGTGA GGGTGAGGAAGAGGAGAGCGATGTGGACGAGGAGGAAGAGGATGCGCGGA TGGAGCGGTTGGTGGAAGAGAGTGGGGAGGAAGAGGAGGAGGAGGAGGAG GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGATGATAA GGACGATGACGAGGAGGAAAAAGAGGACGCGGAGGGGTCCGCAGACGAAT CTGACAACGTGAAAGACAATGACAAGGACGAAGAGGAGGGTGTTGCCAAG GCGAGGAGGAAGAAGGGCAAAAAGGGCGCACCCTTGGATAAGGAAGCGTT GAATGACGGGTTCTTCGATTGGGAGGAGATGGAGAAGTTTGCGGATGAAA TGGACGAAGAGGAGTTCAATGACGACGAGGAAGATGAAAGTGATGATGAT GATGAGGAGGAGGAGGAGGAGGAGGATGGAAAGGAGATTCGTTATCAGGA CTTCTGGGGGAATGAGGAGGAGGACGAGGAAGAGCCGAAAGGGGAGGAGA AGGGGGGAGATAGTAAATCGGGTGCCTTTGTGACGAGCAGCAAGGAGGGG AAACGGAAATTGAGTAACCGGAGCCGGCAGGCGCATGATGAGGCGGAAGA TGGAGACGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG AGGAGGAGGAGGAGGAGGAGGAGGAGAAAGAGGATGAGGACCCTAAAACC CTTACAAGCTTCCAGCGACAGCAGCGAACAAAACGCAAGGAGATTGCCGA GTTGGAGCATGAGTTGTTGTCGGAACGCCCGTGGGAATTGCGGGGAGAGG TCAAGGCGGGAGATAGGCCGGAGAACTCGCTCTTGGAAGCAGTGGTGGAC GTGGAGCTGGCACGACGACCCGAGGTGTTAATGACGGTTGAAAAGGGCCA GTCCATTGAACAGATGATCAAGCAGAGGGTGATGGAAGAGAGGTGGGATG ACGTCGTCCCCAAGACATTAGGGGAGGAGGTGATGATGAACGGGAGGAGG AGGGGGAGGGAGGGAGAGGAGGAGCTGCCGGAGGTGTCTCAGGAGAAGTC GACGGAGGGCCTTGGAGCGATTTATGAGAAGGAGTACATGCGGTTAGCCA TGGGCCAGGGGGGGGGGGAAGGAGGGGAGAAAGAGACGAAGGAAACTCGG GAAAAGATAGAGATGGCGGCATTGTTTCGATTGGTGTGTGGGAAATTGGA CGCGCTGTCTAACTTCAATTTCGTCCCGAAGGCCGCACAGGTTGAGATGA CGGTGCAGGCGAACGTGCCTGCTATCGCGATGGAAGAGGTGTTGCCTTTG GCGGTCGGACACGCCGACACCCAGGCACCGGAGGAGGTGCATGGGAAGAA GCGTGGAAGGGAGGGGGTGTTGAGAGAAGCGGCGGAATTGGACCAAGCGG ATCGGAACAGGATTAGGAGGGATAAGAAGGCAGCACGGCGCAAGGCCAGA AAGCAGGCAGCAACGGAGGAGAAACTGGTGAATCGCATCAACCCCGGTCT GGGGAACAAATACGCGAAAGAGAAAATGCGGTCAGAGATCAAGGCGAGTG GGAAGGTGGTGCAAGGCACGTTGGAAGCAGCGAGTCAACAAGGCGCATAC AGTACTTCCGGGAAGTTCTTTGCGGGCCTTCAGGAGGAGGTGTCGGCGCA TGGAGGGGCGTATGCGAAGAGGAAGGTGACGGAGAAGGGGCAAGAGACGG CGAAGGAGCTGGCGCGGACGGCGGGGGGGAACAGATTGAAGCTTTAG back to topprotein sequence of NO01G03980.1 >NO01G03980.1-protein ID=NO01G03980.1-protein|Name=NO01G03980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=739bp MTRKNKIQAVNRDDSGDNTGEAVRMVNSSSSTGPVDLPLSTIEGALARLE YLADAPESFCAPPSDIAESLTQVLKTVFDHARKTQPIKLGPLQELFVEGF DTETLWEQLQLRNPAVRKLVVKVTRRLMEKEKEEGGATMMFEKEEEDIEE RKENKSEGEEEESDVDEEEEDARMERLVEESGEEEEEEEEEEEEEEEEEE EEEEDDKDDDEEEKEDAEGSADESDNVKDNDKDEEEGVAKARRKKGKKGA PLDKEALNDGFFDWEEMEKFADEMDEEEFNDDEEDESDDDDEEEEEEEDG KEIRYQDFWGNEEEDEEEPKGEEKGGDSKSGAFVTSSKEGKRKLSNRSRQ AHDEAEDGDEEEEEEEEEEEEEEEEEEEEEEEKEDEDPKTLTSFQRQQRT KRKEIAELEHELLSERPWELRGEVKAGDRPENSLLEAVVDVELARRPEVL MTVEKGQSIEQMIKQRVMEERWDDVVPKTLGEEVMMNGRRRGREGEEELP EVSQEKSTEGLGAIYEKEYMRLAMGQGGGEGGEKETKETREKIEMAALFR LVCGKLDALSNFNFVPKAAQVEMTVQANVPAIAMEEVLPLAVGHADTQAP EEVHGKKRGREGVLREAAELDQADRNRIRRDKKAARRKARKQAATEEKLV NRINPGLGNKYAKEKMRSEIKASGKVVQGTLEAASQQGAYSTSGKFFAGL QEEVSAHGGAYAKRKVTEKGQETAKELARTAGGNRLKL* back to topmRNA from alignment at chr1:1061780..1064129- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G03980.1 ID=NO01G03980.1|Name=NO01G03980.1|organism=Nannochloropsis oceanica|type=mRNA|length=2350bp|location=Sequence derived from alignment at chr1:1061780..1064129- (Nannochloropsis oceanica) ACAGACCTTACAAACACACGTCAAAGCACCATGACAAGAAAGAATAAAAT
ACAAGCAGTAAATAGAGATGACAGCGGCGACAACACAGGCGAGGCAGTGC
GTATGGTCAACTCCAGCTCTAGTACTGGGCCCGTTGACCTCCCCCTCAGC
ACCATCGAAGGAGCCTTGGCGCGGCTCGAGTACCTGGCAGACGCCCCCGA
AAGCTTTTGTGCACCGCCATCAGATATAGCAGAGGTGTGTATTTTGTAAG
GATTCGGTAGCATACCCTTTTCCAAGTCTCAAAGTACCCATCTTCCCTCT
CCCAATTTTCCCCCTTTCTTCCCCCCCCCCCACCCAGAGCCTCACTCAAG
TGCTTAAGACCGTCTTCGACCATGCCCGGAAGACTCAGCCCATCAAACTC
GGGCCTCTACAAGAGTTGTTTGTAGAGGGGTTTGATACCGAGACGCTATG
GGAGCAGCTGCAGTTGCGGAACCCGGCCGTACGGAAGTTGGTGGTGAAAG
TGACGAGAAGGCTCATGGAGAAAGAGAAGGAGGAGGGAGGGGCAACAATG
ATGTTTGAAAAGGAGGAAGAGGATATAGAGGAGAGGAAAGAGAACAAGAG
TGAGGGTGAGGAAGAGGAGAGCGATGTGGACGAGGAGGAAGAGGATGCGC
GGATGGAGCGGTTGGTGGAAGAGAGTGGGGAGGAAGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGATGA
TAAGGACGATGACGAGGAGGAAAAAGAGGACGCGGAGGGGTCCGCAGACG
AATCTGACAACGTGAAAGACAATGACAAGGACGAAGAGGAGGGTGTTGCC
AAGGCGAGGAGGAAGAAGGGCAAAAAGGGCGCACCCTTGGATAAGGAAGC
GTTGAATGACGGGTTCTTCGATTGGGAGGAGATGGAGAAGTTTGCGGATG
AAATGGACGAAGAGGAGTTCAATGACGACGAGGAAGATGAAAGTGATGAT
GATGATGAGGAGGAGGAGGAGGAGGAGGATGGAAAGGAGATTCGTTATCA
GGACTTCTGGGGGAATGAGGAGGAGGACGAGGAAGAGCCGAAAGGGGAGG
AGAAGGGGGGAGATAGTAAATCGGGTGCCTTTGTGACGAGCAGCAAGGAG
GGGAAACGGAAATTGAGTAACCGGAGCCGGCAGGCGCATGATGAGGCGGA
AGATGGAGACGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAAGAGGATGAGGACCCTAAA
ACCCTTACAAGCTTCCAGCGACAGCAGCGAACAAAACGCAAGGAGATTGC
CGAGTTGGAGCATGAGTTGTTGTCGGAACGCCCGTGGGAATTGCGGGGAG
AGGTCAAGGCGGGAGATAGGCCGGAGAACTCGCTCTTGGAAGCAGTGGTG
GACGTGGAGCTGGCACGACGACCCGAGGTGTTAATGACGGTTGAAAAGGG
CCAGTCCATTGAACAGATGATCAAGCAGAGGGTGATGGAAGAGAGGTGGG
ATGACGTCGTCCCCAAGACATTAGGGGAGGAGGTGATGATGAACGGGAGG
AGGAGGGGGAGGGAGGGAGAGGAGGAGCTGCCGGAGGTGTCTCAGGAGAA
GTCGACGGAGGGCCTTGGAGCGATTTATGAGAAGGAGTACATGCGGTTAG
CCATGGGCCAGGGGGGGGGGGAAGGAGGGGAGAAAGAGACGAAGGAAACT
CGGGAAAAGATAGAGATGGCGGCATTGTTTCGATTGGTGTGTGGGAAATT
GGACGCGCTGTCTAACTTCAATTTCGTCCCGAAGGCCGCACAGGTTGAGA
TGACGGTGCAGGCGAACGTGCCTGCTATCGCGATGGAAGAGGTGTTGCCT
TTGGCGGTCGGACACGCCGACACCCAGGCACCGGAGGAGGTGCATGGGAA
GAAGCGTGGAAGGGAGGGGGTGTTGAGAGAAGCGGCGGAATTGGACCAAG
CGGATCGGAACAGGATTAGGAGGGATAAGAAGGCAGCACGGCGCAAGGCC
AGAAAGCAGGCAGCAACGGAGGAGAAACTGGTGAATCGCATCAACCCCGG
TCTGGGGAACAAATACGCGAAAGAGAAAATGCGGTCAGAGATCAAGGCGA
GTGGGAAGGTGGTGCAAGGCACGTTGGAAGCAGCGAGTCAACAAGGCGCA
TACAGTACTTCCGGGAAGTTCTTTGCGGGCCTTCAGGAGGAGGTGTCGGC
GCATGGAGGGGCGTATGCGAAGAGGAAGGTGACGGAGAAGGGGCAAGAGA
CGGCGAAGGAGCTGGCGCGGACGGCGGGGGGGAACAGATTGAAGCTTTAG
back to topCoding sequence (CDS) from alignment at chr1:1061780..1064129- >NO01G03980.1 ID=NO01G03980.1|Name=NO01G03980.1|organism=Nannochloropsis oceanica|type=CDS|length=2217bp|location=Sequence derived from alignment at chr1:1061780..1064129- (Nannochloropsis oceanica) ATGACAAGAAAGAATAAAATACAAGCAGTAAATAGAGATGACAGCGGCGA CAACACAGGCGAGGCAGTGCGTATGGTCAACTCCAGCTCTAGTACTGGGC CCGTTGACCTCCCCCTCAGCACCATCGAAGGAGCCTTGGCGCGGCTCGAG TACCTGGCAGACGCCCCCGAAAGCTTTTGTGCACCGCCATCAGATATAGC AGAGAGCCTCACTCAAGTGCTTAAGACCGTCTTCGACCATGCCCGGAAGA CTCAGCCCATCAAACTCGGGCCTCTACAAGAGTTGTTTGTAGAGGGGTTT GATACCGAGACGCTATGGGAGCAGCTGCAGTTGCGGAACCCGGCCGTACG GAAGTTGGTGGTGAAAGTGACGAGAAGGCTCATGGAGAAAGAGAAGGAGG AGGGAGGGGCAACAATGATGTTTGAAAAGGAGGAAGAGGATATAGAGGAG AGGAAAGAGAACAAGAGTGAGGGTGAGGAAGAGGAGAGCGATGTGGACGA GGAGGAAGAGGATGCGCGGATGGAGCGGTTGGTGGAAGAGAGTGGGGAGG AAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG GAGGAGGAGGAGGATGATAAGGACGATGACGAGGAGGAAAAAGAGGACGC GGAGGGGTCCGCAGACGAATCTGACAACGTGAAAGACAATGACAAGGACG AAGAGGAGGGTGTTGCCAAGGCGAGGAGGAAGAAGGGCAAAAAGGGCGCA CCCTTGGATAAGGAAGCGTTGAATGACGGGTTCTTCGATTGGGAGGAGAT GGAGAAGTTTGCGGATGAAATGGACGAAGAGGAGTTCAATGACGACGAGG AAGATGAAAGTGATGATGATGATGAGGAGGAGGAGGAGGAGGAGGATGGA AAGGAGATTCGTTATCAGGACTTCTGGGGGAATGAGGAGGAGGACGAGGA AGAGCCGAAAGGGGAGGAGAAGGGGGGAGATAGTAAATCGGGTGCCTTTG TGACGAGCAGCAAGGAGGGGAAACGGAAATTGAGTAACCGGAGCCGGCAG GCGCATGATGAGGCGGAAGATGGAGACGAGGAGGAGGAGGAGGAGGAGGA GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAAG AGGATGAGGACCCTAAAACCCTTACAAGCTTCCAGCGACAGCAGCGAACA AAACGCAAGGAGATTGCCGAGTTGGAGCATGAGTTGTTGTCGGAACGCCC GTGGGAATTGCGGGGAGAGGTCAAGGCGGGAGATAGGCCGGAGAACTCGC TCTTGGAAGCAGTGGTGGACGTGGAGCTGGCACGACGACCCGAGGTGTTA ATGACGGTTGAAAAGGGCCAGTCCATTGAACAGATGATCAAGCAGAGGGT GATGGAAGAGAGGTGGGATGACGTCGTCCCCAAGACATTAGGGGAGGAGG TGATGATGAACGGGAGGAGGAGGGGGAGGGAGGGAGAGGAGGAGCTGCCG GAGGTGTCTCAGGAGAAGTCGACGGAGGGCCTTGGAGCGATTTATGAGAA GGAGTACATGCGGTTAGCCATGGGCCAGGGGGGGGGGGAAGGAGGGGAGA AAGAGACGAAGGAAACTCGGGAAAAGATAGAGATGGCGGCATTGTTTCGA TTGGTGTGTGGGAAATTGGACGCGCTGTCTAACTTCAATTTCGTCCCGAA GGCCGCACAGGTTGAGATGACGGTGCAGGCGAACGTGCCTGCTATCGCGA TGGAAGAGGTGTTGCCTTTGGCGGTCGGACACGCCGACACCCAGGCACCG GAGGAGGTGCATGGGAAGAAGCGTGGAAGGGAGGGGGTGTTGAGAGAAGC GGCGGAATTGGACCAAGCGGATCGGAACAGGATTAGGAGGGATAAGAAGG CAGCACGGCGCAAGGCCAGAAAGCAGGCAGCAACGGAGGAGAAACTGGTG AATCGCATCAACCCCGGTCTGGGGAACAAATACGCGAAAGAGAAAATGCG GTCAGAGATCAAGGCGAGTGGGAAGGTGGTGCAAGGCACGTTGGAAGCAG CGAGTCAACAAGGCGCATACAGTACTTCCGGGAAGTTCTTTGCGGGCCTT CAGGAGGAGGTGTCGGCGCATGGAGGGGCGTATGCGAAGAGGAAGGTGAC GGAGAAGGGGCAAGAGACGGCGAAGGAGCTGGCGCGGACGGCGGGGGGGA ACAGATTGAAGCTTTAG back to top
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