NO01G03980.1, NO01G03980.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G03980.1
Unique NameNO01G03980.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2247
Alignment locationchr1:1061780..1064129 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1061780..1064129 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO01G03980.1 vs.
Match: EWM29314.1 (u3 small nucleolar ribonucleoprotein mpp10, partial [Nannochloropsis gaditana])

HSP 1 Score: 429.5 bits (1103), Expect = 2.100e-116
Identity = 286/460 (62.17%), Postives = 341/460 (74.13%), Query Frame = 0
Query:  279 FNDDEEDESDDDDEEEEEEEDGKEIRYQDFWGNEEEDEEEPKGEEKGGDSKSGAFVTSSKEGKRKLSNRSRQAHDEAEDGDEEEEEEEEEEEEEEEEEEEEEEEKEDEDPKTLTSFQRQQRTKRKEIAELEHELLSERPWELRGEVKAGDRPENSLLEAVVDVELARRPEVLMTVEKGQSIEQMIKQRVMEERWDDVVPKTLGEEVMMNGRRRGREGEEELPEVSQEKSTEGLGAIYEKEYMRLAMGQGGGEGGEKETKETREKIEMAALFRLVCGKLDALSNFNFVPKAAQVEMTVQANVPAIAMEEVLPLAVGHADTQAPEEVHGKKRGREGVLREAAELDQADRNRIRRDKKAARRKARKQAATEEKLVNRINPGLGNKYAKEKMRSEIKASGKVVQGTLEAASQQGAYSTSGKFFAGLQEEVSAHGGAYAKRKVTEKGQETAKELARTAGGNRLKL 739
            F D +E E +  +EEE+EEE+ +E         EEE+EE  + EE+G D +             +L    R+   E E GD        +E EEE  +E             LTSFQ++QR +RKEIAELE ELLSERPWELRGEVKA +RPENSLLEAVVDVELARRPEVLMTVE+ QS+E+MIK RV E RWDDVVP+ LGEEVMMN  RRG +  EELPEVSQEK+ EGLG +YEKEY+RLAMGQ G      ETKE++EK E+AALFR +  KLDALSNFNF PKAA VE++VQ+NVPAIAMEEVLP+AVG   T APEEVHGKKRGREGV+RE+AE+DQ DR R+RR KKAARRKAR+Q   E++LV+R+NPGLGNKYAKEK++SEI++SGKVV GT ++ SQ+GAYSTSGKFFAGLQEEVS HGGAYAK++ T  G E+ K+  +  GGN LKL
Sbjct:    2 FGDRDEAEGEKGEEEEDEEEEEEE--------EEEEEEEGVEEEEEGNDLE-------------RLDGMGREKGKEREGGDSRSGARRRQEGEEEVAQEG-----------LLTSFQKEQRARRKEIAELERELLSERPWELRGEVKATERPENSLLEAVVDVELARRPEVLMTVERSQSLEEMIKARVAEGRWDDVVPQALGEEVMMN--RRGHK--EELPEVSQEKAGEGLGEVYEKEYLRLAMGQEG------ETKESKEKAELAALFRKLSAKLDALSNFNFTPKAAHVEVSVQSNVPAIAMEEVLPMAVGQGSTLAPEEVHGKKRGREGVVRESAEMDQGDRRRLRRGKKAARRKARRQKTAEDRLVHRLNPGLGNKYAKEKLQSEIRSSGKVVLGTKDSGSQKGAYSTSGKFFAGLQEEVSKHGGAYAKQRST--GLESEKK--KFKGGNALKL 415          
The following BLAST results are available for this feature:
BLAST of NO01G03980.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29314.12.100e-11662.17u3 small nucleolar ribonucleoprotein mpp10, partia... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G03980NO01G03980Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G03980.1NO01G03980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G03980.1.cds1NO01G03980.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03980.1.cds2NO01G03980.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G03980.1 ID=NO01G03980.1|Name=NO01G03980.1|organism=Nannochloropsis oceanica|type=mRNA|length=2247bp
ACAGACCTTACAAACACACGTCAAAGCACCATGACAAGAAAGAATAAAAT
ACAAGCAGTAAATAGAGATGACAGCGGCGACAACACAGGCGAGGCAGTGC
GTATGGTCAACTCCAGCTCTAGTACTGGGCCCGTTGACCTCCCCCTCAGC
ACCATCGAAGGAGCCTTGGCGCGGCTCGAGTACCTGGCAGACGCCCCCGA
AAGCTTTTGTGCACCGCCATCAGATATAGCAGAGAGCCTCACTCAAGTGC
TTAAGACCGTCTTCGACCATGCCCGGAAGACTCAGCCCATCAAACTCGGG
CCTCTACAAGAGTTGTTTGTAGAGGGGTTTGATACCGAGACGCTATGGGA
GCAGCTGCAGTTGCGGAACCCGGCCGTACGGAAGTTGGTGGTGAAAGTGA
CGAGAAGGCTCATGGAGAAAGAGAAGGAGGAGGGAGGGGCAACAATGATG
TTTGAAAAGGAGGAAGAGGATATAGAGGAGAGGAAAGAGAACAAGAGTGA
GGGTGAGGAAGAGGAGAGCGATGTGGACGAGGAGGAAGAGGATGCGCGGA
TGGAGCGGTTGGTGGAAGAGAGTGGGGAGGAAGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGATGATAA
GGACGATGACGAGGAGGAAAAAGAGGACGCGGAGGGGTCCGCAGACGAAT
CTGACAACGTGAAAGACAATGACAAGGACGAAGAGGAGGGTGTTGCCAAG
GCGAGGAGGAAGAAGGGCAAAAAGGGCGCACCCTTGGATAAGGAAGCGTT
GAATGACGGGTTCTTCGATTGGGAGGAGATGGAGAAGTTTGCGGATGAAA
TGGACGAAGAGGAGTTCAATGACGACGAGGAAGATGAAAGTGATGATGAT
GATGAGGAGGAGGAGGAGGAGGAGGATGGAAAGGAGATTCGTTATCAGGA
CTTCTGGGGGAATGAGGAGGAGGACGAGGAAGAGCCGAAAGGGGAGGAGA
AGGGGGGAGATAGTAAATCGGGTGCCTTTGTGACGAGCAGCAAGGAGGGG
AAACGGAAATTGAGTAACCGGAGCCGGCAGGCGCATGATGAGGCGGAAGA
TGGAGACGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGAAAGAGGATGAGGACCCTAAAACC
CTTACAAGCTTCCAGCGACAGCAGCGAACAAAACGCAAGGAGATTGCCGA
GTTGGAGCATGAGTTGTTGTCGGAACGCCCGTGGGAATTGCGGGGAGAGG
TCAAGGCGGGAGATAGGCCGGAGAACTCGCTCTTGGAAGCAGTGGTGGAC
GTGGAGCTGGCACGACGACCCGAGGTGTTAATGACGGTTGAAAAGGGCCA
GTCCATTGAACAGATGATCAAGCAGAGGGTGATGGAAGAGAGGTGGGATG
ACGTCGTCCCCAAGACATTAGGGGAGGAGGTGATGATGAACGGGAGGAGG
AGGGGGAGGGAGGGAGAGGAGGAGCTGCCGGAGGTGTCTCAGGAGAAGTC
GACGGAGGGCCTTGGAGCGATTTATGAGAAGGAGTACATGCGGTTAGCCA
TGGGCCAGGGGGGGGGGGAAGGAGGGGAGAAAGAGACGAAGGAAACTCGG
GAAAAGATAGAGATGGCGGCATTGTTTCGATTGGTGTGTGGGAAATTGGA
CGCGCTGTCTAACTTCAATTTCGTCCCGAAGGCCGCACAGGTTGAGATGA
CGGTGCAGGCGAACGTGCCTGCTATCGCGATGGAAGAGGTGTTGCCTTTG
GCGGTCGGACACGCCGACACCCAGGCACCGGAGGAGGTGCATGGGAAGAA
GCGTGGAAGGGAGGGGGTGTTGAGAGAAGCGGCGGAATTGGACCAAGCGG
ATCGGAACAGGATTAGGAGGGATAAGAAGGCAGCACGGCGCAAGGCCAGA
AAGCAGGCAGCAACGGAGGAGAAACTGGTGAATCGCATCAACCCCGGTCT
GGGGAACAAATACGCGAAAGAGAAAATGCGGTCAGAGATCAAGGCGAGTG
GGAAGGTGGTGCAAGGCACGTTGGAAGCAGCGAGTCAACAAGGCGCATAC
AGTACTTCCGGGAAGTTCTTTGCGGGCCTTCAGGAGGAGGTGTCGGCGCA
TGGAGGGGCGTATGCGAAGAGGAAGGTGACGGAGAAGGGGCAAGAGACGG
CGAAGGAGCTGGCGCGGACGGCGGGGGGGAACAGATTGAAGCTTTAG
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protein sequence of NO01G03980.1

>NO01G03980.1-protein ID=NO01G03980.1-protein|Name=NO01G03980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=739bp
MTRKNKIQAVNRDDSGDNTGEAVRMVNSSSSTGPVDLPLSTIEGALARLE
YLADAPESFCAPPSDIAESLTQVLKTVFDHARKTQPIKLGPLQELFVEGF
DTETLWEQLQLRNPAVRKLVVKVTRRLMEKEKEEGGATMMFEKEEEDIEE
RKENKSEGEEEESDVDEEEEDARMERLVEESGEEEEEEEEEEEEEEEEEE
EEEEDDKDDDEEEKEDAEGSADESDNVKDNDKDEEEGVAKARRKKGKKGA
PLDKEALNDGFFDWEEMEKFADEMDEEEFNDDEEDESDDDDEEEEEEEDG
KEIRYQDFWGNEEEDEEEPKGEEKGGDSKSGAFVTSSKEGKRKLSNRSRQ
AHDEAEDGDEEEEEEEEEEEEEEEEEEEEEEEKEDEDPKTLTSFQRQQRT
KRKEIAELEHELLSERPWELRGEVKAGDRPENSLLEAVVDVELARRPEVL
MTVEKGQSIEQMIKQRVMEERWDDVVPKTLGEEVMMNGRRRGREGEEELP
EVSQEKSTEGLGAIYEKEYMRLAMGQGGGEGGEKETKETREKIEMAALFR
LVCGKLDALSNFNFVPKAAQVEMTVQANVPAIAMEEVLPLAVGHADTQAP
EEVHGKKRGREGVLREAAELDQADRNRIRRDKKAARRKARKQAATEEKLV
NRINPGLGNKYAKEKMRSEIKASGKVVQGTLEAASQQGAYSTSGKFFAGL
QEEVSAHGGAYAKRKVTEKGQETAKELARTAGGNRLKL*
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mRNA from alignment at chr1:1061780..1064129-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G03980.1 ID=NO01G03980.1|Name=NO01G03980.1|organism=Nannochloropsis oceanica|type=mRNA|length=2350bp|location=Sequence derived from alignment at chr1:1061780..1064129- (Nannochloropsis oceanica)
ACAGACCTTACAAACACACGTCAAAGCACCATGACAAGAAAGAATAAAAT ACAAGCAGTAAATAGAGATGACAGCGGCGACAACACAGGCGAGGCAGTGC GTATGGTCAACTCCAGCTCTAGTACTGGGCCCGTTGACCTCCCCCTCAGC ACCATCGAAGGAGCCTTGGCGCGGCTCGAGTACCTGGCAGACGCCCCCGA AAGCTTTTGTGCACCGCCATCAGATATAGCAGAGGTGTGTATTTTGTAAG GATTCGGTAGCATACCCTTTTCCAAGTCTCAAAGTACCCATCTTCCCTCT CCCAATTTTCCCCCTTTCTTCCCCCCCCCCCACCCAGAGCCTCACTCAAG TGCTTAAGACCGTCTTCGACCATGCCCGGAAGACTCAGCCCATCAAACTC GGGCCTCTACAAGAGTTGTTTGTAGAGGGGTTTGATACCGAGACGCTATG GGAGCAGCTGCAGTTGCGGAACCCGGCCGTACGGAAGTTGGTGGTGAAAG TGACGAGAAGGCTCATGGAGAAAGAGAAGGAGGAGGGAGGGGCAACAATG ATGTTTGAAAAGGAGGAAGAGGATATAGAGGAGAGGAAAGAGAACAAGAG TGAGGGTGAGGAAGAGGAGAGCGATGTGGACGAGGAGGAAGAGGATGCGC GGATGGAGCGGTTGGTGGAAGAGAGTGGGGAGGAAGAGGAGGAGGAGGAG GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGATGA TAAGGACGATGACGAGGAGGAAAAAGAGGACGCGGAGGGGTCCGCAGACG AATCTGACAACGTGAAAGACAATGACAAGGACGAAGAGGAGGGTGTTGCC AAGGCGAGGAGGAAGAAGGGCAAAAAGGGCGCACCCTTGGATAAGGAAGC GTTGAATGACGGGTTCTTCGATTGGGAGGAGATGGAGAAGTTTGCGGATG AAATGGACGAAGAGGAGTTCAATGACGACGAGGAAGATGAAAGTGATGAT GATGATGAGGAGGAGGAGGAGGAGGAGGATGGAAAGGAGATTCGTTATCA GGACTTCTGGGGGAATGAGGAGGAGGACGAGGAAGAGCCGAAAGGGGAGG AGAAGGGGGGAGATAGTAAATCGGGTGCCTTTGTGACGAGCAGCAAGGAG GGGAAACGGAAATTGAGTAACCGGAGCCGGCAGGCGCATGATGAGGCGGA AGATGGAGACGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG AGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAAGAGGATGAGGACCCTAAA ACCCTTACAAGCTTCCAGCGACAGCAGCGAACAAAACGCAAGGAGATTGC CGAGTTGGAGCATGAGTTGTTGTCGGAACGCCCGTGGGAATTGCGGGGAG AGGTCAAGGCGGGAGATAGGCCGGAGAACTCGCTCTTGGAAGCAGTGGTG GACGTGGAGCTGGCACGACGACCCGAGGTGTTAATGACGGTTGAAAAGGG CCAGTCCATTGAACAGATGATCAAGCAGAGGGTGATGGAAGAGAGGTGGG ATGACGTCGTCCCCAAGACATTAGGGGAGGAGGTGATGATGAACGGGAGG AGGAGGGGGAGGGAGGGAGAGGAGGAGCTGCCGGAGGTGTCTCAGGAGAA GTCGACGGAGGGCCTTGGAGCGATTTATGAGAAGGAGTACATGCGGTTAG CCATGGGCCAGGGGGGGGGGGAAGGAGGGGAGAAAGAGACGAAGGAAACT CGGGAAAAGATAGAGATGGCGGCATTGTTTCGATTGGTGTGTGGGAAATT GGACGCGCTGTCTAACTTCAATTTCGTCCCGAAGGCCGCACAGGTTGAGA TGACGGTGCAGGCGAACGTGCCTGCTATCGCGATGGAAGAGGTGTTGCCT TTGGCGGTCGGACACGCCGACACCCAGGCACCGGAGGAGGTGCATGGGAA GAAGCGTGGAAGGGAGGGGGTGTTGAGAGAAGCGGCGGAATTGGACCAAG CGGATCGGAACAGGATTAGGAGGGATAAGAAGGCAGCACGGCGCAAGGCC AGAAAGCAGGCAGCAACGGAGGAGAAACTGGTGAATCGCATCAACCCCGG TCTGGGGAACAAATACGCGAAAGAGAAAATGCGGTCAGAGATCAAGGCGA GTGGGAAGGTGGTGCAAGGCACGTTGGAAGCAGCGAGTCAACAAGGCGCA TACAGTACTTCCGGGAAGTTCTTTGCGGGCCTTCAGGAGGAGGTGTCGGC GCATGGAGGGGCGTATGCGAAGAGGAAGGTGACGGAGAAGGGGCAAGAGA CGGCGAAGGAGCTGGCGCGGACGGCGGGGGGGAACAGATTGAAGCTTTAG
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Coding sequence (CDS) from alignment at chr1:1061780..1064129-

>NO01G03980.1 ID=NO01G03980.1|Name=NO01G03980.1|organism=Nannochloropsis oceanica|type=CDS|length=2217bp|location=Sequence derived from alignment at chr1:1061780..1064129- (Nannochloropsis oceanica)
ATGACAAGAAAGAATAAAATACAAGCAGTAAATAGAGATGACAGCGGCGA
CAACACAGGCGAGGCAGTGCGTATGGTCAACTCCAGCTCTAGTACTGGGC
CCGTTGACCTCCCCCTCAGCACCATCGAAGGAGCCTTGGCGCGGCTCGAG
TACCTGGCAGACGCCCCCGAAAGCTTTTGTGCACCGCCATCAGATATAGC
AGAGAGCCTCACTCAAGTGCTTAAGACCGTCTTCGACCATGCCCGGAAGA
CTCAGCCCATCAAACTCGGGCCTCTACAAGAGTTGTTTGTAGAGGGGTTT
GATACCGAGACGCTATGGGAGCAGCTGCAGTTGCGGAACCCGGCCGTACG
GAAGTTGGTGGTGAAAGTGACGAGAAGGCTCATGGAGAAAGAGAAGGAGG
AGGGAGGGGCAACAATGATGTTTGAAAAGGAGGAAGAGGATATAGAGGAG
AGGAAAGAGAACAAGAGTGAGGGTGAGGAAGAGGAGAGCGATGTGGACGA
GGAGGAAGAGGATGCGCGGATGGAGCGGTTGGTGGAAGAGAGTGGGGAGG
AAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGATGATAAGGACGATGACGAGGAGGAAAAAGAGGACGC
GGAGGGGTCCGCAGACGAATCTGACAACGTGAAAGACAATGACAAGGACG
AAGAGGAGGGTGTTGCCAAGGCGAGGAGGAAGAAGGGCAAAAAGGGCGCA
CCCTTGGATAAGGAAGCGTTGAATGACGGGTTCTTCGATTGGGAGGAGAT
GGAGAAGTTTGCGGATGAAATGGACGAAGAGGAGTTCAATGACGACGAGG
AAGATGAAAGTGATGATGATGATGAGGAGGAGGAGGAGGAGGAGGATGGA
AAGGAGATTCGTTATCAGGACTTCTGGGGGAATGAGGAGGAGGACGAGGA
AGAGCCGAAAGGGGAGGAGAAGGGGGGAGATAGTAAATCGGGTGCCTTTG
TGACGAGCAGCAAGGAGGGGAAACGGAAATTGAGTAACCGGAGCCGGCAG
GCGCATGATGAGGCGGAAGATGGAGACGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAAG
AGGATGAGGACCCTAAAACCCTTACAAGCTTCCAGCGACAGCAGCGAACA
AAACGCAAGGAGATTGCCGAGTTGGAGCATGAGTTGTTGTCGGAACGCCC
GTGGGAATTGCGGGGAGAGGTCAAGGCGGGAGATAGGCCGGAGAACTCGC
TCTTGGAAGCAGTGGTGGACGTGGAGCTGGCACGACGACCCGAGGTGTTA
ATGACGGTTGAAAAGGGCCAGTCCATTGAACAGATGATCAAGCAGAGGGT
GATGGAAGAGAGGTGGGATGACGTCGTCCCCAAGACATTAGGGGAGGAGG
TGATGATGAACGGGAGGAGGAGGGGGAGGGAGGGAGAGGAGGAGCTGCCG
GAGGTGTCTCAGGAGAAGTCGACGGAGGGCCTTGGAGCGATTTATGAGAA
GGAGTACATGCGGTTAGCCATGGGCCAGGGGGGGGGGGAAGGAGGGGAGA
AAGAGACGAAGGAAACTCGGGAAAAGATAGAGATGGCGGCATTGTTTCGA
TTGGTGTGTGGGAAATTGGACGCGCTGTCTAACTTCAATTTCGTCCCGAA
GGCCGCACAGGTTGAGATGACGGTGCAGGCGAACGTGCCTGCTATCGCGA
TGGAAGAGGTGTTGCCTTTGGCGGTCGGACACGCCGACACCCAGGCACCG
GAGGAGGTGCATGGGAAGAAGCGTGGAAGGGAGGGGGTGTTGAGAGAAGC
GGCGGAATTGGACCAAGCGGATCGGAACAGGATTAGGAGGGATAAGAAGG
CAGCACGGCGCAAGGCCAGAAAGCAGGCAGCAACGGAGGAGAAACTGGTG
AATCGCATCAACCCCGGTCTGGGGAACAAATACGCGAAAGAGAAAATGCG
GTCAGAGATCAAGGCGAGTGGGAAGGTGGTGCAAGGCACGTTGGAAGCAG
CGAGTCAACAAGGCGCATACAGTACTTCCGGGAAGTTCTTTGCGGGCCTT
CAGGAGGAGGTGTCGGCGCATGGAGGGGCGTATGCGAAGAGGAAGGTGAC
GGAGAAGGGGCAAGAGACGGCGAAGGAGCTGGCGCGGACGGCGGGGGGGA
ACAGATTGAAGCTTTAG
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Synonyms
Publications