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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:1044425..1047516 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G03910.1 vs.
Match: EWM29331.1 (Winged helix-turn-helix transcription repressor [Nannochloropsis gaditana]) HSP 1 Score: 332.4 bits (851), Expect = 3.600e-87 Identity = 224/394 (56.85%), Postives = 254/394 (64.47%), Query Frame = 0
Query: 1 MRSLRGSAVAAVKQREQQQQQQQQQPSPPPPAPASSADEGAYYDDDDGTSSVGGGSISMVTSGGSSSSVGGSGGAGGREQPLFLRKTYQMLESCPKAIAAWSVKGDSFLIKDPDRFAQTVIPQYFSHSNFSSFVRQLNFYGFRKVKQDVRVLQNGSIALSSSTGANSSATTITTTTSSSITTSNKNNNNNNNNNNNNNNNNNNNKWWEFRHDKFIRGRPQLLSQIRRATHGASNEQEVSHLKSEVGQLKGKIQEMCSDIDRLTSLVNGLMLEKMEQDGMDPKKRKVSVDRAAASAARVMAALEGPLTSSKRGSAGSRGRGRRLSGARSLPRERRRCYRDEEDDDDSDEREDERDSAEEEEDGAEEQSQGAEGEG-SLEGVRALMKPEFGCADRG 394
MRSLRGS A KQ+ P P P P+SSADEGA YDDDDGTSS+GGGS+ SG + ++ + G GGR+QPLFLRKTYQMLESC +IAAWS KGDSFLIKDPD FAQTVIPQYFSH+NFSSFVRQLNFYGFRKVKQDVRVLQ GS A +SS AN+ + KWWEFRHDKFIRG+PQLL+QIRRATHGASNEQEVSHLK+EVGQLK +IQEM SDIDRLTSLV GLM+ KM +G DPKKRKVS DRAAA+A VM ALEG + RGR+ SG ++ R EE+DDD +E E+E E E +G G G G S+E R K F RG
Sbjct: 14 MRSLRGSGAAIAKQK----------PPVPVPVPSSSADEGADYDDDDGTSSLGGGSVVAANSGSTGAT---NNGIGGRDQPLFLRKTYQMLESCSPSIAAWSGKGDSFLIKDPDSFAQTVIPQYFSHNNFSSFVRQLNFYGFRKVKQDVRVLQGGSNAAASSNPANAGG-----------------------------GGGASAKWWEFRHDKFIRGKPQLLAQIRRATHGASNEQEVSHLKTEVGQLKDRIQEMSSDIDRLTSLVQGLMVAKMGSEGADPKKRKVSADRAAAAA--VMVALEG------------QRRGRKASGRQTGGRR-----EGEEEDDDEEEEEEE----ESEGEGGRRGPGGCRGPGRSME--REASKRVFSRVRRG 340
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G03910.1 ID=NO01G03910.1|Name=NO01G03910.1|organism=Nannochloropsis oceanica|type=mRNA|length=2815bp AAGAGGAGAAAATGGGCACTCAGCAACACACACACACACACAACAATAAC ACAATAATCTGAGCAGCGAGAAACAATCGCTGAAAAAGAGGGCTCTGTAT AAACAGAGGCACCCACCCCACCACGTCCTCATTTTATTACCACAAGGTGA GCGACCGTCGAGTAAATGGCTTTGGAGTGGCGGAGAGGTCACCAAGCATG ATCGCGTTTGACACTGTGCTATGTTGCAGGTGCAAGCCCCAACACAAAAA AAAATCCTGTCCACGGGTGAATTCAAATTTCTCTGCCCTGTCTTCGTCTT GTCTTTTTTTTGCATTCTTGTTCCCCACAGACCACAGATGACTGTCAGGC CTCTTTGTGGCGCTTCCACGCCTCTCCATGCTGTCAAAGGAGTGTCGGGA TGGGCATACCCCACGTCTAGGGATGGCGCATGAGCCTTGGCTTGACGCCG CCAGGCTCCGTCATCACTGTGGTCTTATGAGTTGGCTTGTTCTTTCAGTA CCACGCGCTCATCATCCGCCCCGCACTACATTTCATGCACACCCACAGGA ACCACGACGGTACACAATAACTCAAGGATGAGGAGCCTTCGAGGCTCGGC AGTAGCCGCTGTCAAGCAACGAGAACAACAACAACAACAACAACAGCAGC AGCCCTCCCCGCCTCCGCCGGCACCTGCGTCCTCTGCGGATGAAGGGGCG TATTACGATGATGATGACGGAACCAGCAGCGTTGGTGGGGGGAGCATCAG CATGGTGACCAGTGGCGGCAGTTCTAGTAGCGTAGGGGGCAGCGGGGGTG CCGGCGGGCGGGAGCAACCCTTGTTCTTGCGCAAGACGTATCAGATGCTC GAGTCGTGCCCCAAGGCCATTGCTGCCTGGTCGGTCAAGGGCGACTCCTT CTTGATCAAGGACCCGGATCGCTTTGCCCAGACAGTGATCCCCCAATACT TTAGTCACAGTAACTTTTCGTCCTTTGTCCGGCAGTTAAACTTTTACGGA TTCCGGAAGGTCAAGCAGGACGTGCGGGTGTTGCAGAACGGAAGCATCGC CCTTTCCAGTAGCACTGGCGCCAACTCTAGCGCCACCACCATCACCACCA CAACCAGCAGCAGCATCACCACCAGCAACAAGAACAACAACAACAACAAC AACAACAACAACAACAACAACAACAACAACAACAACAATAAATGGTGGGA ATTTCGTCACGATAAATTTATTCGCGGGAGGCCTCAACTCCTCTCGCAGA TCCGCCGAGCTACTCATGGGGCAAGCAACGAGCAAGAGGTCTCACATCTT AAGTCGGAAGTAGGGCAGCTCAAAGGTAAGATCCAGGAAATGTGTTCGGA CATAGATCGTCTCACCTCGTTGGTCAATGGGCTTATGCTCGAAAAAATGG AACAAGATGGGATGGATCCCAAGAAGAGGAAAGTCTCTGTCGATCGGGCG GCGGCATCGGCGGCGAGGGTGATGGCGGCGCTGGAAGGGCCCTTGACATC GTCGAAGCGTGGTAGTGCGGGGTCGCGGGGGCGGGGGAGGCGACTTTCAG GGGCGAGGTCGCTGCCGAGGGAGCGAAGGCGATGCTACCGGGATGAGGAG GATGACGACGACAGCGATGAAAGGGAAGATGAGAGAGATAGTGCAGAAGA AGAGGAGGATGGGGCCGAAGAGCAGAGCCAAGGTGCGGAGGGAGAGGGGA GTCTGGAGGGGGTGCGTGCCTTGATGAAGCCTGAGTTTGGTTGTGCGGAC CGAGGGGTGGGGCTGGAGGAGTTGGACGCGAGCAGCTGCACCACTGACCC TGTTTTGGCTTTTCATGAACACGGTCACCTCTTTTTGACGGGCCCGGGGG GGCGGGACGATGATGGGAAGATGATCCCGGCGTTTGATCCTTTTTTGGGC GGCGAGGAGGATCAGGAACAGGAACAGGAGCAGGGAGGGGTGACTGGCGT AGCGCCAGTCGTGGGGACGGAGGTGGGTGGTGGAGGGAAGGACATATGCC CCGAGGAAGACTTTGCGCTGAGCATCCTTGAACTGGGAGCGGAAGAGCAG CAGCAGTTGCGCCGACGACAGAAGTCACAGGGGCTGCCGGGCTCCGCGGT GTTGGTCGGGCAGAGCAGAGGCAGTGGGAGCAGCAGCAAGGAAGCGAATA ATTTGTTGGGTGTTGCATTCCCGATGGAAACCTCCCCCCCCGGCTCCCCG CGCTCGATAGCCACCAGCAGGAGCAACAGCAGTCTAAGCAGCCTAGACGC CGTGTCGCAATCAGTCATTCCACGGCCACCGCAGCTGCAGCACCTGCAGC AACAGCAGCAGCAACAACAACAACAACAACAACCACCACCACCACGGCAA CAACAACAGCACCCACGTGGGCAAGACCTGGGAGCGCTACAGCAATGCCT GACAGGGCTCTCGCCCGAGCACAAGCAACGGTTGGTCGAAACGCTGGTTA TGGCCCTGGGCACCAACAACCCACCTTCCATCACTCAGACCGCCACCGGC ACGTCTTCCCCCGTTACCTCCTCTTCCTCCTCCTCTTCTTCTGCTTCTTC TTCTTCTCCAACATCTTCTTCCTCATCTTCTGCCTCTTCTAGTGCTTCTT CCTATTCTTCTTCTGTGGCCATGTCGGCGGCCGCCTCCTCGGGCACGGTG GCAGCGACGGCGACGGGAGTCCCTCCGATGGCGAGTGCTGCGTTTGGAGC GTTTTTGACTCAGTATGCAAAGGAGTTAGTGGAGAAGGAGAAGCCACCCC AGTCTTCTCTAGTGGGGCATCATCACCACCATCATACGCGCAAGGCGATT CGATCGCAGGGATAG back to topprotein sequence of NO01G03910.1 >NO01G03910.1-protein ID=NO01G03910.1-protein|Name=NO01G03910.1|organism=Nannochloropsis oceanica|type=polypeptide|length=746bp MRSLRGSAVAAVKQREQQQQQQQQQPSPPPPAPASSADEGAYYDDDDGTS SVGGGSISMVTSGGSSSSVGGSGGAGGREQPLFLRKTYQMLESCPKAIAA WSVKGDSFLIKDPDRFAQTVIPQYFSHSNFSSFVRQLNFYGFRKVKQDVR VLQNGSIALSSSTGANSSATTITTTTSSSITTSNKNNNNNNNNNNNNNNN NNNNKWWEFRHDKFIRGRPQLLSQIRRATHGASNEQEVSHLKSEVGQLKG KIQEMCSDIDRLTSLVNGLMLEKMEQDGMDPKKRKVSVDRAAASAARVMA ALEGPLTSSKRGSAGSRGRGRRLSGARSLPRERRRCYRDEEDDDDSDERE DERDSAEEEEDGAEEQSQGAEGEGSLEGVRALMKPEFGCADRGVGLEELD ASSCTTDPVLAFHEHGHLFLTGPGGRDDDGKMIPAFDPFLGGEEDQEQEQ EQGGVTGVAPVVGTEVGGGGKDICPEEDFALSILELGAEEQQQLRRRQKS QGLPGSAVLVGQSRGSGSSSKEANNLLGVAFPMETSPPGSPRSIATSRSN SSLSSLDAVSQSVIPRPPQLQHLQQQQQQQQQQQQPPPPRQQQQHPRGQD LGALQQCLTGLSPEHKQRLVETLVMALGTNNPPSITQTATGTSSPVTSSS SSSSSASSSSPTSSSSSSASSSASSYSSSVAMSAAASSGTVAATATGVPP MASAAFGAFLTQYAKELVEKEKPPQSSLVGHHHHHHTRKAIRSQG* back to topmRNA from alignment at chr1:1044425..1047516- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G03910.1 ID=NO01G03910.1|Name=NO01G03910.1|organism=Nannochloropsis oceanica|type=mRNA|length=3092bp|location=Sequence derived from alignment at chr1:1044425..1047516- (Nannochloropsis oceanica) AAGAGGAGAAAATGGGCACTCAGCAACACACACACACACACAACAATAAC
ACAATAATCTGAGCAGCGAGAAACAATCGCTGAAAAAGAGGGCTCTGTAT
AAACAGAGGCACCCACCCCACCACGTCCTCATTTTATTACCACAAGGTGA
GCGACCGTCGAGTAAATGGCTTTGGAGTGGCGGAGAGGTCACCAAGCATG
ATCGCGTTTGACACTGTGCTATGTTGCAGGTGCAAGCCCCAACACAAAAA
AAAATCCTGTCCACGGGTGAATTCAAATTTCTCTGCCCTGTCTTCGTCTT
GTCTTTTTTTTGCATTCTTGTTCCCCACAGACCACAGATGACTGTCAGGC
CTCTTTGTGGCGCTTCCACGCCTCTCCATGCTGTCAAAGGAGTGTCGGGA
TGGGCATACCCCACGTCTAGGGATGGCGCATGAGCCTTGGCTTGACGCCG
CCAGGCTCCGTCATCACTGTGGTCTTATGAGTTGGCTTGTTCTTTCAGTA
CCACGCGCTCATCATCCGCCCCGCACTACATTTCATGCACACCCACAGGA
ACCACGACGGTACACAATAACTCAAGGATGAGGAGCCTTCGAGGCTCGGC
AGTAGCCGCTGTCAAGCAACGAGAACAACAACAACAACAACAACAGCAGC
AGCCCTCCCCGCCTCCGCCGGCACCTGCGTCCTCTGCGGATGAAGGGGCG
TATTACGATGATGATGACGGAACCAGCAGCGTTGGTGGGGGGAGCATCAG
CATGGTGACCAGTGGCGGCAGTTCTAGTAGCGTAGGGGGCAGCGGGGGTG
CCGGCGGGCGGGAGCAACCCTTGTTCTTGCGCAAGACGTATCAGATGCTC
GAGTCGTGCCCCAAGGCCATTGCTGCCTGGTCGGTCAAGGGCGACTCCTT
CTTGATCAAGGACCCGGATCGCTTTGCCCAGACAGTGATCCCCCAATACT
TTAGTCACAGTAACTTTTCGTCCTTTGTCCGGCAGTTAAACTTTTACGGA
TTCCGGAAGGTCAAGCAGGACGTGCGGGTGTTGCAGGTATGTTTTTTTCA
GAAGGCAGGGAAAGACGGGGGGGTGATATGAAGCATAAGACGCTTCGAAA
GCATGTACATAGATCTTATAGCATATCGAGATAGTCAGACACCCTGGGGC
ATACACACCTGACATCTCCAATAACCCTCTGTATACGTGTGGTGTGTATT
TGTGTCGGTCGTTATGGTTGGGGGCAAGATAGGAAGAAAATTGGCGCCAA
ACTCTCTTTTCATGCTCACCGATGTCCGTCCTATTCCGTTTCCACACTAA
CTTCCATGCACAGAACGGAAGCATCGCCCTTTCCAGTAGCACTGGCGCCA
ACTCTAGCGCCACCACCATCACCACCACAACCAGCAGCAGCATCACCACC
AGCAACAAGAACAACAACAACAACAACAACAACAACAACAACAACAACAA
CAACAACAACAACAATAAATGGTGGGAATTTCGTCACGATAAATTTATTC
GCGGGAGGCCTCAACTCCTCTCGCAGATCCGCCGAGCTACTCATGGGGCA
AGCAACGAGCAAGAGGTCTCACATCTTAAGTCGGAAGTAGGGCAGCTCAA
AGGTAAGATCCAGGAAATGTGTTCGGACATAGATCGTCTCACCTCGTTGG
TCAATGGGCTTATGCTCGAAAAAATGGAACAAGATGGGATGGATCCCAAG
AAGAGGAAAGTCTCTGTCGATCGGGCGGCGGCATCGGCGGCGAGGGTGAT
GGCGGCGCTGGAAGGGCCCTTGACATCGTCGAAGCGTGGTAGTGCGGGGT
CGCGGGGGCGGGGGAGGCGACTTTCAGGGGCGAGGTCGCTGCCGAGGGAG
CGAAGGCGATGCTACCGGGATGAGGAGGATGACGACGACAGCGATGAAAG
GGAAGATGAGAGAGATAGTGCAGAAGAAGAGGAGGATGGGGCCGAAGAGC
AGAGCCAAGGTGCGGAGGGAGAGGGGAGTCTGGAGGGGGTGCGTGCCTTG
ATGAAGCCTGAGTTTGGTTGTGCGGACCGAGGGGTGGGGCTGGAGGAGTT
GGACGCGAGCAGCTGCACCACTGACCCTGTTTTGGCTTTTCATGAACACG
GTCACCTCTTTTTGACGGGCCCGGGGGGGCGGGACGATGATGGGAAGATG
ATCCCGGCGTTTGATCCTTTTTTGGGCGGCGAGGAGGATCAGGAACAGGA
ACAGGAGCAGGGAGGGGTGACTGGCGTAGCGCCAGTCGTGGGGACGGAGG
TGGGTGGTGGAGGGAAGGACATATGCCCCGAGGAAGACTTTGCGCTGAGC
ATCCTTGAACTGGGAGCGGAAGAGCAGCAGCAGTTGCGCCGACGACAGAA
GTCACAGGGGCTGCCGGGCTCCGCGGTGTTGGTCGGGCAGAGCAGAGGCA
GTGGGAGCAGCAGCAAGGAAGCGAATAATTTGTTGGGTGTTGCATTCCCG
ATGGAAACCTCCCCCCCCGGCTCCCCGCGCTCGATAGCCACCAGCAGGAG
CAACAGCAGTCTAAGCAGCCTAGACGCCGTGTCGCAATCAGTCATTCCAC
GGCCACCGCAGCTGCAGCACCTGCAGCAACAGCAGCAGCAACAACAACAA
CAACAACAACCACCACCACCACGGCAACAACAACAGCACCCACGTGGGCA
AGACCTGGGAGCGCTACAGCAATGCCTGACAGGGCTCTCGCCCGAGCACA
AGCAACGGTTGGTCGAAACGCTGGTTATGGCCCTGGGCACCAACAACCCA
CCTTCCATCACTCAGACCGCCACCGGCACGTCTTCCCCCGTTACCTCCTC
TTCCTCCTCCTCTTCTTCTGCTTCTTCTTCTTCTCCAACATCTTCTTCCT
CATCTTCTGCCTCTTCTAGTGCTTCTTCCTATTCTTCTTCTGTGGCCATG
TCGGCGGCCGCCTCCTCGGGCACGGTGGCAGCGACGGCGACGGGAGTCCC
TCCGATGGCGAGTGCTGCGTTTGGAGCGTTTTTGACTCAGTATGCAAAGG
AGTTAGTGGAGAAGGAGAAGCCACCCCAGTCTTCTCTAGTGGGGCATCAT
CACCACCATCATACGCGCAAGGCGATTCGATCGCAGGGATAG back to topCoding sequence (CDS) from alignment at chr1:1044425..1047516- >NO01G03910.1 ID=NO01G03910.1|Name=NO01G03910.1|organism=Nannochloropsis oceanica|type=CDS|length=2238bp|location=Sequence derived from alignment at chr1:1044425..1047516- (Nannochloropsis oceanica) ATGAGGAGCCTTCGAGGCTCGGCAGTAGCCGCTGTCAAGCAACGAGAACA ACAACAACAACAACAACAGCAGCAGCCCTCCCCGCCTCCGCCGGCACCTG CGTCCTCTGCGGATGAAGGGGCGTATTACGATGATGATGACGGAACCAGC AGCGTTGGTGGGGGGAGCATCAGCATGGTGACCAGTGGCGGCAGTTCTAG TAGCGTAGGGGGCAGCGGGGGTGCCGGCGGGCGGGAGCAACCCTTGTTCT TGCGCAAGACGTATCAGATGCTCGAGTCGTGCCCCAAGGCCATTGCTGCC TGGTCGGTCAAGGGCGACTCCTTCTTGATCAAGGACCCGGATCGCTTTGC CCAGACAGTGATCCCCCAATACTTTAGTCACAGTAACTTTTCGTCCTTTG TCCGGCAGTTAAACTTTTACGGATTCCGGAAGGTCAAGCAGGACGTGCGG GTGTTGCAGAACGGAAGCATCGCCCTTTCCAGTAGCACTGGCGCCAACTC TAGCGCCACCACCATCACCACCACAACCAGCAGCAGCATCACCACCAGCA ACAAGAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAC AACAACAACAATAAATGGTGGGAATTTCGTCACGATAAATTTATTCGCGG GAGGCCTCAACTCCTCTCGCAGATCCGCCGAGCTACTCATGGGGCAAGCA ACGAGCAAGAGGTCTCACATCTTAAGTCGGAAGTAGGGCAGCTCAAAGGT AAGATCCAGGAAATGTGTTCGGACATAGATCGTCTCACCTCGTTGGTCAA TGGGCTTATGCTCGAAAAAATGGAACAAGATGGGATGGATCCCAAGAAGA GGAAAGTCTCTGTCGATCGGGCGGCGGCATCGGCGGCGAGGGTGATGGCG GCGCTGGAAGGGCCCTTGACATCGTCGAAGCGTGGTAGTGCGGGGTCGCG GGGGCGGGGGAGGCGACTTTCAGGGGCGAGGTCGCTGCCGAGGGAGCGAA GGCGATGCTACCGGGATGAGGAGGATGACGACGACAGCGATGAAAGGGAA GATGAGAGAGATAGTGCAGAAGAAGAGGAGGATGGGGCCGAAGAGCAGAG CCAAGGTGCGGAGGGAGAGGGGAGTCTGGAGGGGGTGCGTGCCTTGATGA AGCCTGAGTTTGGTTGTGCGGACCGAGGGGTGGGGCTGGAGGAGTTGGAC GCGAGCAGCTGCACCACTGACCCTGTTTTGGCTTTTCATGAACACGGTCA CCTCTTTTTGACGGGCCCGGGGGGGCGGGACGATGATGGGAAGATGATCC CGGCGTTTGATCCTTTTTTGGGCGGCGAGGAGGATCAGGAACAGGAACAG GAGCAGGGAGGGGTGACTGGCGTAGCGCCAGTCGTGGGGACGGAGGTGGG TGGTGGAGGGAAGGACATATGCCCCGAGGAAGACTTTGCGCTGAGCATCC TTGAACTGGGAGCGGAAGAGCAGCAGCAGTTGCGCCGACGACAGAAGTCA CAGGGGCTGCCGGGCTCCGCGGTGTTGGTCGGGCAGAGCAGAGGCAGTGG GAGCAGCAGCAAGGAAGCGAATAATTTGTTGGGTGTTGCATTCCCGATGG AAACCTCCCCCCCCGGCTCCCCGCGCTCGATAGCCACCAGCAGGAGCAAC AGCAGTCTAAGCAGCCTAGACGCCGTGTCGCAATCAGTCATTCCACGGCC ACCGCAGCTGCAGCACCTGCAGCAACAGCAGCAGCAACAACAACAACAAC AACAACCACCACCACCACGGCAACAACAACAGCACCCACGTGGGCAAGAC CTGGGAGCGCTACAGCAATGCCTGACAGGGCTCTCGCCCGAGCACAAGCA ACGGTTGGTCGAAACGCTGGTTATGGCCCTGGGCACCAACAACCCACCTT CCATCACTCAGACCGCCACCGGCACGTCTTCCCCCGTTACCTCCTCTTCC TCCTCCTCTTCTTCTGCTTCTTCTTCTTCTCCAACATCTTCTTCCTCATC TTCTGCCTCTTCTAGTGCTTCTTCCTATTCTTCTTCTGTGGCCATGTCGG CGGCCGCCTCCTCGGGCACGGTGGCAGCGACGGCGACGGGAGTCCCTCCG ATGGCGAGTGCTGCGTTTGGAGCGTTTTTGACTCAGTATGCAAAGGAGTT AGTGGAGAAGGAGAAGCCACCCCAGTCTTCTCTAGTGGGGCATCATCACC ACCATCATACGCGCAAGGCGATTCGATCGCAGGGATAG back to top
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