NO01G03880.1, NO01G03880.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G03880.1
Unique NameNO01G03880.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2040
Alignment locationchr1:1036669..1038893 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1036669..1038893 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO01G03880.1 vs.
Match: EWM29319.1 (hypothetical protein Naga_100136g11 [Nannochloropsis gaditana])

HSP 1 Score: 69.3 bits (168), Expect = 2.100e-8
Identity = 82/201 (40.80%), Postives = 113/201 (56.22%), Query Frame = 0 
Query:    1 MSSTFRTNRRLVFLFGLLILLVCFVSMGAGKVANAKGKALV-----------------------------------EENEEDEYDEEREMMEEFDEDE-----EDEDEDID----EWDEE-DMDEEGEDRKLTIDDLDGMIDKEDLMRQLDAMGLTLDDVEISFDEEEEGMDRDLEDEDELDEEDEEEFDEEEFDEEDEED 157
            M+    TNRRLVF+FG+L+ L+CFV+ G G+ A +  K                                      E+ EEDE+++E +  EE DE E      +E++DID    EWDE  D  E+G+   L + DL+G+IDKEDLMR+L+ MGL LDDV IS D  E+ M+ D  +E+EL+EEDE+E DEE  DEE+ E+
Sbjct:   56 MARILSTNRRLVFVFGVLVFLMCFVASGMGESARSARKVAAASEFDEEETEALKDWEEDGEWDEEEDEDQDLEDGFEDEEEDEFEDEEDGFEEEDEREMTDYEAEEEDDIDDEGPEWDEALDQIEDGDGPSLDLGDLEGLIDKEDLMRKLEEMGLDLDDVHISVDMGEDAMEED--EEEELEEEDEDEEDEE--DEEEYEN 252
The following BLAST results are available for this feature:
BLAST of NO01G03880.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29319.12.100e-840.80hypothetical protein Naga_100136g11 [Nannochlorops... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G03880NO01G03880Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G03880.1NO01G03880.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G03880.1.cds1NO01G03880.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03880.1.cds2NO01G03880.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G03880.1 ID=NO01G03880.1|Name=NO01G03880.1|organism=Nannochloropsis oceanica|type=mRNA|length=2040bp
TTTGAAACGGTCGTCGTGTGCCGCCGTGATTCGGTTTTGCCCCCTGCGCC
CATGCACGCTTCGTGCTTCGTCGTCGTCCGCGACTCTTCCCGGGAAACCA
GGCACAGCCTACCCACTCCCATGTACAAGAGAGACAAGCTTAACAGCCAG
CAGGACGGATTCGGTTGACTTTGTGGGTGCCAGACAGTGACTTTCACCTT
TATTCGGCCCTGGAGCCTGAGCCCATTTTTGCTTGGTCGTTCATTCCTTC
TGCTCCTGTAGCACTCGTATACCACTAGCACCATCGTTGGACCCACAGCA
CAGGTGCTGCCAGCCTTTAGAGTCCTTCTTCTGCCTTTTGCCTGGGTAGG
CGGGACGACTTCCAACCACCCGTCTTGCTCGTCCCCCCCGGTAGGCCCTT
TCTGCCGAGCACAAGACATTCATGAGCAACCTCTGAGTCTTCGTGAGTTG
ACGCTTCCGCCCACCACGACACAGTCAGGCACCACAACCCCACAGCACTC
ATACGATAGAGCCGGCATGCTGGAGACCTTCCCCTATTCACCATCATGCA
GGGCCCGGGCCCGGCGGACTGCGCCCATATATATCTTATAATAGCTCCCA
GCGAACCATATCCCTCCGGTACCACGCAAAGAGCACCTCACCACGGCGGC
TTCTCAACCGAAGAAGGTCCAATGACCAACTCGCGCAAATCACTGCCATT
GCCAGAGAATACGTTTCATCGCCTTTCACCAATCTTCGCTCACCGATACC
CATCACCTTCTCTACCCCCTAGACTCTACCATCTGATCCTAACAAATCCA
CAGAGACCACCACCATCCTGTCTCCTCAACCAAAAATGTCGTCCACTTTC
CGCACGAATCGTCGGCTGGTTTTCCTCTTCGGGCTGCTCATCCTCTTGGT
GTGCTTCGTGTCCATGGGGGCTGGCAAAGTGGCAAATGCTAAGGGCAAGG
CGCTTGTTGAAGAAAACGAGGAGGATGAGTACGACGAGGAAAGGGAGATG
ATGGAGGAATTCGACGAGGACGAGGAGGATGAAGACGAGGATATTGATGA
ATGGGATGAGGAGGATATGGATGAGGAAGGAGAGGACCGGAAATTGACGA
TTGACGATTTGGACGGCATGATCGACAAAGAGGATCTGATGCGCCAGCTC
GATGCGATGGGACTGACATTGGATGATGTGGAGATTTCGTTTGATGAAGA
GGAGGAGGGGATGGATCGCGACTTGGAGGACGAGGACGAGCTCGATGAGG
AGGATGAGGAGGAGTTCGATGAGGAGGAGTTCGATGAGGAGGATGAGGAG
GATCGCGACTTGGAGGAGGAGGATGAATTCGATGAGGAGGATGAACTCGA
TGAGGAGGAGGATGAGGAGGATCGCGACTTGGAGGAGGAGGATGAATTCG
ATGAGGAGGAGGAGGAGGATGAGTTCGATGAGGAGGATGAACTCGATGAG
GAGGAGGAGGAGGATCGCGACTTGGAGGAGGAGGATGAGTTCGATGAGGA
GGATGAACTCGATGAGGAGGAGGAGGAGGAGGATCGCGACTTGGAGGAGG
AGGATGAGTTTGATGATGAGGATGAATTCGATGAGGAGGAGGATGAGGAG
GAGGATCGCGACTTGGAGGACGAGGAAGACTTCGATGAGGAGTTCGATGA
GGACTTTGATGAGGATGAAGAGTTTTAAATATTTTTCAATTGGGACGGGT
ATCGTGCAATTAATTTACAAGGAAAAAAGAGGGAGACAGGCTCGTGGCAA
ATGGAAGCATAGCAAACCAGGAAGAACGATCGTCATTTTCGTGGACCCCA
GCGACACGCAAAAGAAAAGAAAGACAAAAAATATATGGAATCTAACATAA
GGAGATAAGGCGAGGGGAAGGTGTAGAACGCAACAGAGTGGAAAGTACAC
GAATAGAGGAAAGACAGACCGTGTGACACGCCTTGGGGACGGGACGCAAC
CACGGAATTATTCAAGCGAAGGAAGGCAAAGCGAAAGGCGTAATCAGCTC
CAAAAAGAATAAACAGAGTCGAGGAGCAATTGTGATATGC
back to top

protein sequence of NO01G03880.1

>NO01G03880.1-protein ID=NO01G03880.1-protein|Name=NO01G03880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=281bp
MSSTFRTNRRLVFLFGLLILLVCFVSMGAGKVANAKGKALVEENEEDEYD
EEREMMEEFDEDEEDEDEDIDEWDEEDMDEEGEDRKLTIDDLDGMIDKED
LMRQLDAMGLTLDDVEISFDEEEEGMDRDLEDEDELDEEDEEEFDEEEFD
EEDEEDRDLEEEDEFDEEDELDEEEDEEDRDLEEEDEFDEEEEEDEFDEE
DELDEEEEEDRDLEEEDEFDEEDELDEEEEEEDRDLEEEDEFDDEDEFDE
EEDEEEDRDLEDEEDFDEEFDEDFDEDEEF*
back to top

mRNA from alignment at chr1:1036669..1038893+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G03880.1 ID=NO01G03880.1|Name=NO01G03880.1|organism=Nannochloropsis oceanica|type=mRNA|length=2225bp|location=Sequence derived from alignment at chr1:1036669..1038893+ (Nannochloropsis oceanica)
TTTGAAACGGTCGTCGTGTGCCGCCGTGATTCGGTTTTGCCCCCTGCGCC
CATGCACGCTTCGTGCTTCGTCGTCGTCCGCGACTCTTCCCGGGAAACCA
GGCACAGCCTACCCACTCCCATGTACAAGAGAGACAAGCTTAACAGCCAG
CAGGACGGATTCGGTTGACTTTGTGGGTGCCAGACAGTGACTTTCACCTT
TATTCGGCCCTGGAGCCTGAGCCCATTTTTGCTTGGTCGTTCATTCCTTC
TGCTCCTGTAGCACTCGTATACCACTAGCACCATCGTTGGACCCACAGCA
CAGGTGCTGCCAGCCTTTAGAGTCCTTCTTCTGCCTTTTGCCTGGGTAGG
CGGGACGACTTCCAACCACCCGTCTTGCTCGTCCCCCCCGGTAGGCCCTT
TCTGCCGAGCACAAGACATTCATGAGCAACCTCTGAGTCTTCGTGAGTTG
ACGCTTCCGCCCACCACGACACAGTCAGGCACCACAACCCCACAGCACTC
ATACGATAGAGCCGGCATGCTGGAGACCTTCCCCTATTCACCATCATGCA
GGGCCCGGGCCCGGCGGACTGCGCCCATATATATCTTATAATAGCTCCCA
GCGAACCATATCCCTCCGGTACCACGCAAAGAGCACCTCACCACGGCGGC
TTCTCAACCGAAGAAGGTCCAATGACCAACTCGCGCAAATCACTGCCATT
GCCAGAGAATACGTTTCATCGCCTTTCACCAATCTTCGCTCACCGATACC
CATCACCTTCTCTACCCCCTAGACTCTACCATCTGATCCTAACAAATCCA
CAGAGACCACCACCATCCTGTCTCCTCAACCAAAAATGTCGTCCACTTTC
CGCACGAATCGTCGGCTGGTTTTCCTCTTCGGGCTGCTCATCCTCTTGGT
GTGCTTCGTGTCCATGGGGGCTGGCAAAGTGGCAAATGCTAAGGGCAAGG
CGCTTGTTGAAGAAAACGAGGAGGATGAGTACGACGAGGAAAGGGAGATG
ATGGAGGAATTCGACGAGGACGAGGAGGATGAAGACGAGGATATTGATGA
ATGGGATGAGGAGGATATGGATGAGGAAGGAGAGGACCGGAAATTGACGA
TTGACGATTTGGACGGCATGATCGACAAAGAGGATCTGATGCGCCAGCTC
GATGCGATGGGACTGACATTGGATGTACGTATGCTTGGGAAGAGGGAGGA
AAGTGGGCTGGGTGGTTGGGGAGGGGTGCGGGATGAGAGCATTAAGTGTG
CTCCTACCAGTATGCTATTGTTTTCGATGTGAGGGTAGCATCACGTCACA
CCTTATGAATCAAGCCAACCACTCATTCTTTATTCATTGCAATAAAAACT
TTTATACAGGATGTGGAGATTTCGTTTGATGAAGAGGAGGAGGGGATGGA
TCGCGACTTGGAGGACGAGGACGAGCTCGATGAGGAGGATGAGGAGGAGT
TCGATGAGGAGGAGTTCGATGAGGAGGATGAGGAGGATCGCGACTTGGAG
GAGGAGGATGAATTCGATGAGGAGGATGAACTCGATGAGGAGGAGGATGA
GGAGGATCGCGACTTGGAGGAGGAGGATGAATTCGATGAGGAGGAGGAGG
AGGATGAGTTCGATGAGGAGGATGAACTCGATGAGGAGGAGGAGGAGGAT
CGCGACTTGGAGGAGGAGGATGAGTTCGATGAGGAGGATGAACTCGATGA
GGAGGAGGAGGAGGAGGATCGCGACTTGGAGGAGGAGGATGAGTTTGATG
ATGAGGATGAATTCGATGAGGAGGAGGATGAGGAGGAGGATCGCGACTTG
GAGGACGAGGAAGACTTCGATGAGGAGTTCGATGAGGACTTTGATGAGGA
TGAAGAGTTTTAAATATTTTTCAATTGGGACGGGTATCGTGCAATTAATT
TACAAGGAAAAAAGAGGGAGACAGGCTCGTGGCAAATGGAAGCATAGCAA
ACCAGGAAGAACGATCGTCATTTTCGTGGACCCCAGCGACACGCAAAAGA
AAAGAAAGACAAAAAATATATGGAATCTAACATAAGGAGATAAGGCGAGG
GGAAGGTGTAGAACGCAACAGAGTGGAAAGTACACGAATAGAGGAAAGAC
AGACCGTGTGACACGCCTTGGGGACGGGACGCAACCACGGAATTATTCAA
GCGAAGGAAGGCAAAGCGAAAGGCGTAATCAGCTCCAAAAAGAATAAACA
GAGTCGAGGAGCAATTGTGATATGC
back to top

Coding sequence (CDS) from alignment at chr1:1036669..1038893+

>NO01G03880.1 ID=NO01G03880.1|Name=NO01G03880.1|organism=Nannochloropsis oceanica|type=CDS|length=843bp|location=Sequence derived from alignment at chr1:1036669..1038893+ (Nannochloropsis oceanica)
ATGTCGTCCACTTTCCGCACGAATCGTCGGCTGGTTTTCCTCTTCGGGCT
GCTCATCCTCTTGGTGTGCTTCGTGTCCATGGGGGCTGGCAAAGTGGCAA
ATGCTAAGGGCAAGGCGCTTGTTGAAGAAAACGAGGAGGATGAGTACGAC
GAGGAAAGGGAGATGATGGAGGAATTCGACGAGGACGAGGAGGATGAAGA
CGAGGATATTGATGAATGGGATGAGGAGGATATGGATGAGGAAGGAGAGG
ACCGGAAATTGACGATTGACGATTTGGACGGCATGATCGACAAAGAGGAT
CTGATGCGCCAGCTCGATGCGATGGGACTGACATTGGATGATGTGGAGAT
TTCGTTTGATGAAGAGGAGGAGGGGATGGATCGCGACTTGGAGGACGAGG
ACGAGCTCGATGAGGAGGATGAGGAGGAGTTCGATGAGGAGGAGTTCGAT
GAGGAGGATGAGGAGGATCGCGACTTGGAGGAGGAGGATGAATTCGATGA
GGAGGATGAACTCGATGAGGAGGAGGATGAGGAGGATCGCGACTTGGAGG
AGGAGGATGAATTCGATGAGGAGGAGGAGGAGGATGAGTTCGATGAGGAG
GATGAACTCGATGAGGAGGAGGAGGAGGATCGCGACTTGGAGGAGGAGGA
TGAGTTCGATGAGGAGGATGAACTCGATGAGGAGGAGGAGGAGGAGGATC
GCGACTTGGAGGAGGAGGATGAGTTTGATGATGAGGATGAATTCGATGAG
GAGGAGGATGAGGAGGAGGATCGCGACTTGGAGGACGAGGAAGACTTCGA
TGAGGAGTTCGATGAGGACTTTGATGAGGATGAAGAGTTTTAA
back to top
Synonyms
Publications