NO01G03860.1, NO01G03860.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G03860.1
Unique NameNO01G03860.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length366
Alignment locationchr1:1032397..1033567 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1032397..1033567 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO01G03860.1 vs.
Match: EWM29317.1 (ribosomal protein l29 [Nannochloropsis gaditana])

HSP 1 Score: 114.0 bits (284), Expect = 3.300e-22
Identity = 56/65 (86.15%), Postives = 60/65 (92.31%), Query Frame = 0
Query:   57 PLLTTAAMAKSKNHTNRNQSFKAHRNGIKKPKNYVSKSLKGMDPKYLRNQRFAKKHNKVVKVVKA 122
            P++ ++ MAKSKNHTNRNQSFKAHRNGIKKPKNYVSKSLKGMDPKYLRNQRFAKKHNKVVK   A
Sbjct:   14 PVVKSSVMAKSKNHTNRNQSFKAHRNGIKKPKNYVSKSLKGMDPKYLRNQRFAKKHNKVVKTAGA 78          
The following BLAST results are available for this feature:
BLAST of NO01G03860.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29317.13.300e-2286.15ribosomal protein l29 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G03860NO01G03860Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G03860.1NO01G03860.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G03860.1.cds1NO01G03860.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03860.1.cds2NO01G03860.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03860.1.cds3NO01G03860.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03860.1.cds4NO01G03860.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G03860.1 ID=NO01G03860.1|Name=NO01G03860.1|organism=Nannochloropsis oceanica|type=mRNA|length=366bp
ATGGGAGGACACATGGGATGTGCCATTCTGATGACGGTCCCGCGAGCACC
CTCTGTGTTTTCGGGCGCCATTACAGCCCTGCGGCCGTACCGCTCGCCGC
CTCCACACAGCCTCACTCACATGCCGTCTTCATGCCCATGCGCTCTCCAC
TTGGAAAGAAGAGAGCCTCCTCTCCTTACAACAGCAGCCATGGCCAAGTC
CAAGAACCACACGAACCGAAACCAGTCTTTTAAGGCGCACCGAAACGGCA
TCAAGAAGCCCAAGAACTACGTCTCCAAGTCCCTCAAGGGGATGGACCCC
AAGTACTTGCGCAACCAGCGTTTCGCGAAGAAACACAACAAGGTCGTCAA
GGTAGTGAAGGCATAA
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protein sequence of NO01G03860.1

>NO01G03860.1-protein ID=NO01G03860.1-protein|Name=NO01G03860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=122bp
MGGHMGCAILMTVPRAPSVFSGAITALRPYRSPPPHSLTHMPSSCPCALH
LERREPPLLTTAAMAKSKNHTNRNQSFKAHRNGIKKPKNYVSKSLKGMDP
KYLRNQRFAKKHNKVVKVVKA*
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mRNA from alignment at chr1:1032397..1033567+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G03860.1 ID=NO01G03860.1|Name=NO01G03860.1|organism=Nannochloropsis oceanica|type=mRNA|length=1171bp|location=Sequence derived from alignment at chr1:1032397..1033567+ (Nannochloropsis oceanica)
ATGGGAGGACACATGGGATGTGCCATTCTGATGACGGTCCCGCGAGCACC CTCTGTGTTTTCGGGCGCCATTACAGCCCTGCGGCCGTACCGCTCGCCGC CTCCACACAGCCTCACTCACATGCCGTCTTCATGCCCATGCGCTCTCCAC TTGGTATGCTTGCTTTAGAGGATTATTGGGCAAGAATGAGTGACGTTGTT GGGTGGCCAGCAAACGCTTCCGCAACGCGCTTACGATTGGTGGTGGTGGG CTTGCCTCCCTCCTGTCTGCTTTCTTTGCTTCCTTATGCGTGCAGTCATT ATCTCACCCCTATTTTCTCATGACCATCACAGGAAAGAAGAGAGCCTCCT CTCCTTACAACAGCAGCCATGGCCAAGGTACGTTTCGTGGAGGACGCGGA GGAGTAAAGGTTTCGAAAGGGGATGGAGGGAGGGAGAGATGGCATCGAGG AGGGGGACGATGAGCAGATAAAGCGAATTGGAGCATGCTTACGGGATGTA GTGGATGCCGGAGGCAGAGGAAGAGTGTTAGGCCATGCTATGGGTTTGCG GAAATGTGCCCGACAACCGTGGGCGGGAGCTGGAGGCCGAGGTTCCTCTC GCGTGATGCTTGCATCGATCGAGCGGCCCCCTCTAACCCTTAATTTGCCT TTTCCTCTCCGTCCCCCCTTCCTAATCCCATCGCAGTCCAAGAACCACAC GAACCGAAACCAGTCTTTTAAGGCGCACCGAAACGGCATCAAGAAGCCCA AGAACTACGTCTCCAAGTCCCTCAAGGGGGTAAGTGTCGTCGGAATGATT TCTATTTTATTATTATTTTTATTTTCCATACATACTAGTGCGTGGATTGT GGTGCAAATTTGCTTGGATTGAGAGTCATAGCATACTTCTGTCTTTATTT TATCCGGTGGCTTTGGCAAGCTATGTTAATTAATTCACTTTTGACTGATC ACTTCATGTGCTGTTTTTCGTAATCGTGTATGCTGTAATGCTTCTACTCT TCTCTTCTCCTGCCTCTCCCCCTAAACTCTCCCTCCCTCCCTCCTTCCTT CCCTCCCTCCCTCCCTCCTTCCCTCCCCTCACCTTCACATTTCCAGATGG ACCCCAAGTACTTGCGCAACCAGCGTTTCGCGAAGAAACACAACAAGGTC GTCAAGGTAGTGAAGGCATAA
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Coding sequence (CDS) from alignment at chr1:1032397..1033567+

>NO01G03860.1 ID=NO01G03860.1|Name=NO01G03860.1|organism=Nannochloropsis oceanica|type=CDS|length=366bp|location=Sequence derived from alignment at chr1:1032397..1033567+ (Nannochloropsis oceanica)
ATGGGAGGACACATGGGATGTGCCATTCTGATGACGGTCCCGCGAGCACC
CTCTGTGTTTTCGGGCGCCATTACAGCCCTGCGGCCGTACCGCTCGCCGC
CTCCACACAGCCTCACTCACATGCCGTCTTCATGCCCATGCGCTCTCCAC
TTGGAAAGAAGAGAGCCTCCTCTCCTTACAACAGCAGCCATGGCCAAGTC
CAAGAACCACACGAACCGAAACCAGTCTTTTAAGGCGCACCGAAACGGCA
TCAAGAAGCCCAAGAACTACGTCTCCAAGTCCCTCAAGGGGATGGACCCC
AAGTACTTGCGCAACCAGCGTTTCGCGAAGAAACACAACAAGGTCGTCAA
GGTAGTGAAGGCATAA
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Synonyms
Publications