NO01G03800.2, NO01G03800.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G03800.2
Unique NameNO01G03800.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1102
Alignment locationchr1:1021237..1022588 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1021237..1022588 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO01G03800.2 vs.
Match: EWM29315.1 (ubiquitin family protein [Nannochloropsis gaditana])

HSP 1 Score: 105.5 bits (262), Expect = 8.000e-20
Identity = 52/83 (62.65%), Postives = 64/83 (77.11%), Query Frame = 0
Query:    1 MSMYVRIKRKQQTIFLRAEQRETVQDIKTQIGEIVGQNPADIRLYGPDKTRDMSDSASLGQ-QDIKSDSILYMVFRNPGKQRG 83
            MSMYVR+KR  QTIFL  E  ETVQ +K Q+GEI+GQ+  +IRLYG D+TRDM D +SL + QDIK+DSI+Y VFRN G + G
Sbjct:   38 MSMYVRVKRNHQTIFLHVEPNETVQSVKAQVGEILGQSVENIRLYGSDRTRDMPDGSSLAEFQDIKNDSIIYAVFRNEGTKEG 120          
The following BLAST results are available for this feature:
BLAST of NO01G03800.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29315.18.000e-2062.65ubiquitin family protein [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G03800NO01G03800Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G03800.2NO01G03800.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G03800.2.cds1NO01G03800.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03800.2.cds2NO01G03800.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03800.2.cds3NO01G03800.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G03800.2 ID=NO01G03800.2|Name=NO01G03800.2|organism=Nannochloropsis oceanica|type=mRNA|length=1102bp
CAGACAGGCAAGCCTCCCCCTAAGCCTCTCCATCATCTTTCTTTACGTCC
TGCCGTCGCACCATTAGCTATCCTAAAGTCCTGAGCTATCCCTTGTTGAA
AATAAGAAGCCATGTCCATGTACGTTAGGATCAAGCGAAAGCAACAAACC
ATCTTCCTGCGCGCGGAACAGAGAGAGACCGTGCAAGATATCAAGACACA
GATCGGCGAAATTGTGGGGCAAAACCCGGCGGACATCCGCTTGTATGGAC
CAGACAAGACAAGGGATATGTCAGACTCGGCCTCCTTAGGGCAGCAGGAC
ATCAAGTCAGATTCCATCTTGTACATGGTCTTCAGGAATCCAGGTAAGCA
ACGTGGAGGTTGAGAAGGCTCGGGCAGATAGTGGGGGGGAGGCTTTAAGG
ATGGAACATATCATAGATAGTGTCGGAGAAGCGTATGGCAATGAAGAGGG
CACGGGTGTCGTACGTGTCCCCGTGCGGCAGTGTACCCCAATGGCATGAA
AGGTGCATACAGACACTCTGAATGTTTTCGTCTAAATCACTTCTACAATC
CAAACCCATTTAAAACCAAACCATAGAGGGGGGCGGTTGGGAGGAAGTGG
ATACGATTACACCAGTGACAGGCGGGGAGATGAAGGACTGAGTGATGGTG
CGAGGTAGCATGTAAAAATAGTGACGAATTTCCACCTCTCGCGGAATACA
AACACGTATATAAATGTGCAAGGTGTTTACTCCATCTAGCGAGGTGACAA
AGCATAGTCGAATTAAAAAAGGCTAGGGGGGGAAAATGGCGTGAGTGGGA
CGGGGTATTGGAAGGTTGAAACTGTCATAAGCAGACGAAAATTCTCGTGG
CACTAAGTGACAAGCTGAGGGCTGGGGCGCATTTAAGTCTTCCAAGCAAA
GTTGCCCAGATGAGGAAGGGCTCTGTAGCTTGCCTTCAGATAAAAAAGGG
GGGCGAAGGGTAAGAAGCGACTCTACGACTGCGACTCTACGACAGGGAGG
TTATTATATATATCTTTCAATTTCAATGCCACCACCACCACGCACAAGCA
TGAAAATATACAATACAGAAATGAATGAGAATAACCATCCGGACCCAAAT
GT
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protein sequence of NO01G03800.2

>NO01G03800.2-protein ID=NO01G03800.2-protein|Name=NO01G03800.2|organism=Nannochloropsis oceanica|type=polypeptide|length=84bp
MSMYVRIKRKQQTIFLRAEQRETVQDIKTQIGEIVGQNPADIRLYGPDKT
RDMSDSASLGQQDIKSDSILYMVFRNPGKQRGG*
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mRNA from alignment at chr1:1021237..1022588+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G03800.2 ID=NO01G03800.2|Name=NO01G03800.2|organism=Nannochloropsis oceanica|type=mRNA|length=1352bp|location=Sequence derived from alignment at chr1:1021237..1022588+ (Nannochloropsis oceanica)
CAGACAGGCAAGCCTCCCCCTAAGCCTCTCCATCATCTTTCTTTACGTCC TGCCGTCGCACCATTAGCTATCCTAAAGTCCTGAGCTATCCCTTGTTGAA AATAAGAAGCCATGTCCATGTACGTACCAGGTGTACCCCCCATTGCAATA TCTCCTTGTCTCATTGCCTCGATCCCTTGCCTACTTCTCCCCCCCATTCC CCCACCCCGCTAGGTACGTTAGGATCAAGCGAAAGCAACAAACCATCTTC CTGCGCGCGGAACAGAGAGAGACCGTGCAAGATATCAAGACACAGATCGG CGAAATTGTGGGGCAAAACCCGGCGGACATCCGCTTGTATGGACCAGACA AGGTGCGTCGCGTGTTGCTTGACGACGAAAGGGAAGGGAAGTCAAGGGAC TGCTGATAGAGTGATGCTTGATAGAGTGATGTGATGCTTGTGCACGCCCG GATCTGAAAGAAATTGAAATCATGACTCATATTTTTGCGTACATCCTTTG AATAGCAGACAAGGGATATGTCAGACTCGGCCTCCTTAGGGCAGCAGGAC ATCAAGTCAGATTCCATCTTGTACATGGTCTTCAGGAATCCAGGTAAGCA ACGTGGAGGTTGAGAAGGCTCGGGCAGATAGTGGGGGGGAGGCTTTAAGG ATGGAACATATCATAGATAGTGTCGGAGAAGCGTATGGCAATGAAGAGGG CACGGGTGTCGTACGTGTCCCCGTGCGGCAGTGTACCCCAATGGCATGAA AGGTGCATACAGACACTCTGAATGTTTTCGTCTAAATCACTTCTACAATC CAAACCCATTTAAAACCAAACCATAGAGGGGGGCGGTTGGGAGGAAGTGG ATACGATTACACCAGTGACAGGCGGGGAGATGAAGGACTGAGTGATGGTG CGAGGTAGCATGTAAAAATAGTGACGAATTTCCACCTCTCGCGGAATACA AACACGTATATAAATGTGCAAGGTGTTTACTCCATCTAGCGAGGTGACAA AGCATAGTCGAATTAAAAAAGGCTAGGGGGGGAAAATGGCGTGAGTGGGA CGGGGTATTGGAAGGTTGAAACTGTCATAAGCAGACGAAAATTCTCGTGG CACTAAGTGACAAGCTGAGGGCTGGGGCGCATTTAAGTCTTCCAAGCAAA GTTGCCCAGATGAGGAAGGGCTCTGTAGCTTGCCTTCAGATAAAAAAGGG GGGCGAAGGGTAAGAAGCGACTCTACGACTGCGACTCTACGACAGGGAGG TTATTATATATATCTTTCAATTTCAATGCCACCACCACCACGCACAAGCA TGAAAATATACAATACAGAAATGAATGAGAATAACCATCCGGACCCAAAT GT
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Coding sequence (CDS) from alignment at chr1:1021237..1022588+

>NO01G03800.2 ID=NO01G03800.2|Name=NO01G03800.2|organism=Nannochloropsis oceanica|type=CDS|length=252bp|location=Sequence derived from alignment at chr1:1021237..1022588+ (Nannochloropsis oceanica)
ATGTCCATGTACGTTAGGATCAAGCGAAAGCAACAAACCATCTTCCTGCG
CGCGGAACAGAGAGAGACCGTGCAAGATATCAAGACACAGATCGGCGAAA
TTGTGGGGCAAAACCCGGCGGACATCCGCTTGTATGGACCAGACAAGACA
AGGGATATGTCAGACTCGGCCTCCTTAGGGCAGCAGGACATCAAGTCAGA
TTCCATCTTGTACATGGTCTTCAGGAATCCAGGTAAGCAACGTGGAGGTT
GA
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Synonyms
Publications