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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:1016903..1019085 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G03780.2 vs.
Match: EWM29299.1 (proteasome subunit [Nannochloropsis gaditana]) HSP 1 Score: 365.9 bits (938), Expect = 9.900e-98 Identity = 185/238 (77.73%), Postives = 206/238 (86.55%), Query Frame = 0
Query: 4 QKTVSSHVYTTSLLLLLLIVSVQSE--TTNMFGVTVKNNGLTGTAAAGTATVAGAGPSKRTHSPMVTGTSVLGVKYNGGVMLAADTLASYGSLARFKDVTRLNTVGEHTILGAGGEFSDFQAIGEMLEKLHQDDLNANDGFAHSPAELFHYLRAIFYSKRNKFNPLWNEVLVGGYKDGKPFLGHLDMIGTAFSDDVMATGFGSYLALPIMRKRWHENMTEGEARALLEDCMRVLFYRF 240
+K ++ +TSL + L + T+NMFGVTVKN+G+TGT AGP+KRTHSPMVTGTSVLGVKYNGGVMLAADTLASYGSLARFKDVTRLN VG++TILGAGGEFSDFQAI E+LEK+ Q+D NA+DGF+HSPAELF+YLRAIFYSKRNKFNPLWNEVLVGG+KDGK FLGHLDMIGTAFSD+VMATGFGSYLALPIMRKRWH NMTEGEARALLEDCMRVLFYR+
Sbjct: 3 RKWTGLNLASTSLFFVTLSACLLQVVFTSNMFGVTVKNSGMTGTGTT-------AGPTKRTHSPMVTGTSVLGVKYNGGVMLAADTLASYGSLARFKDVTRLNAVGDYTILGAGGEFSDFQAIQEILEKMDQEDKNADDGFSHSPAELFNYLRAIFYSKRNKFNPLWNEVLVGGFKDGKAFLGHLDMIGTAFSDEVMATGFGSYLALPIMRKRWHANMTEGEARALLEDCMRVLFYRW 233
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G03780.2 ID=NO01G03780.2|Name=NO01G03780.2|organism=Nannochloropsis oceanica|type=mRNA|length=1457bp AACAATAGGAAAAGAAGAGAGAGTCTCGACTTCGTCGTCGACCCTTTTTC CTCCGTGCTGCACGCTCCCGAATTCGAAGCGCCAGTGCATGCGAATCCAG AAGACGGTTTCTAGTCACGTGTACACTACTAGCCTCTTACTACTCCTTCT CATCGTCAGCGTTCAATCCGAAACGACCAACATGTTCGGCGTGACGGTGA AGAACAATGGTCTTACCGGCACAGCTGCTGCTGGCACTGCCACTGTGGCC GGGGCTGGCCCGAGCAAACGCACGCACTCCCCTATGGTGACAGGTACGTC GGTACTGGGCGTTAAGTACAACGGTGGTGTGATGCTTGCCGCGGATACGT TGGCCTCGTACGGTTCCTTGGCGCGATTCAAGGACGTGACGCGGTTGAAC ACGGTGGGGGAGCATACCATTTTGGGGGCTGGAGGAGAATTTTCTGATTT CCAGGCGATCGGGGAGATGCTCGAGAAGCTACACCAGGATGACTTGAATG CCAATGATGGCTTCGCCCACTCCCCCGCCGAGCTATTTCATTACTTGAGG GCAATTTTTTACAGCAAGCGAAACAAGTTCAATCCGTTGTGGAATGAGGT GCTGGTGGGTGGGTACAAGGACGGCAAGCCTTTCCTCGGCCACCTGGACA TGATCGGCACGGCATTCTCCGACGATGTGATGGCCACGGGCTTCGGGTCT TACCTGGCGTTGCCCATTATGCGCAAACGATGGCACGAAAACATGACGGA GGGGGAGGCCCGGGCGTTGTTGGAGGACTGCATGCGTGTGCTGTTCTACA GGTTCGTCGCCTTTTTGCACGTCCGTGGGCGTAGTGAAGGCTAATAATCA TCTTGGATGTACCCGGCCCCTTCCTTTTTCATGTGTCGATGGGTCATTCG TTTAATCCATGCCTCCTCAAATCCACGCACTTCCCCCCCCCCCCCCCGGG CCTCTGCCTCCCTCCTTCCCTTTCTTCCTTCTTTTTTGTTTTTCGACAGG GACTGCCGTGCATTGAACAGGATACAGATCGCCAAGGCGGATGCGAGTGG CGTGCTGGTCTCGCCGGCGTTTAAATTGGAGACAGTCTGGGACCTCGCGT CGTTTTCGGCGCCCAAGGCAGGCATGGACTCGGACGGGTCCTGGTAGAGG GAGGGAGAGAGGGAGGGAGGGAGGGAAGGGAGGGGAGAGGAGGCAAGGAG AGAGAGAGAGTTGCTTACTTGGAATAGAGGCGGAATGGGGGGGGCAGGGA GAGAGGGCGGGACGGAGAGGGCGGAAGGTAGAATGGAGGAAAAAGATTTC ACAAAAGAACAAGAAATCAAAAGAAGAAAGAATAAAAAAGAAAAAGAGAA TGAGGAAAAGGAAGAGTTCGAATCACCACACACTGGAAGAAGCACATGTG CGCAGGGGCACACAAGAGAACGGCAACCAAAGCACTCAACACTTGAATCC ATCGAAC back to topprotein sequence of NO01G03780.2 >NO01G03780.2-protein ID=NO01G03780.2-protein|Name=NO01G03780.2|organism=Nannochloropsis oceanica|type=polypeptide|length=252bp MRIQKTVSSHVYTTSLLLLLLIVSVQSETTNMFGVTVKNNGLTGTAAAGT ATVAGAGPSKRTHSPMVTGTSVLGVKYNGGVMLAADTLASYGSLARFKDV TRLNTVGEHTILGAGGEFSDFQAIGEMLEKLHQDDLNANDGFAHSPAELF HYLRAIFYSKRNKFNPLWNEVLVGGYKDGKPFLGHLDMIGTAFSDDVMAT GFGSYLALPIMRKRWHENMTEGEARALLEDCMRVLFYRFVAFLHVRGRSE G* back to topmRNA from alignment at chr1:1016903..1019085+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G03780.2 ID=NO01G03780.2|Name=NO01G03780.2|organism=Nannochloropsis oceanica|type=mRNA|length=2183bp|location=Sequence derived from alignment at chr1:1016903..1019085+ (Nannochloropsis oceanica) AACAATAGGAAAAGAAGAGAGAGTCTCGACTTCGTCGTCGACCCTTTTTC
CTCCGTGCTGCACGCTCCCGAATTCGAAGCGCCAGTGCATGCGAATCCAG
AAGACGGTTTCTAGTCACGTGGTACGTCATTGTGTGGTGGCTTGTGGGTT
GATAAGGTGGTAATGGTAGTCGTGGTCGTGAGGTTGCTCTGGGGAAGAGG
GGCTGGAATTCGCTGCCACTGCCCGCATGTGATGATGTTGCCTGCCCGGG
GGAGAGACAAAGAGGATGGACCTGTGAAAATTCGTCGTCCTTTGAGGCTT
TGCTATGTTATCGTTCAGCGGCCTGTTGCCAGGAGCTGGCATGGTTGTGG
GGCGTCTGTTTTTTCATTGGCGGTCAGGTCTTACCTGCGCGTTGATGTGA
TGATGCCGCGGCGGGGACATGGCGGCAGCAGCTGCAACACTGCAAGAGTA
GCAGTGCATGTTCGTAATCCGTACCACATCATCGACGCACTGTTACGCAG
TGTCTTGTTGCCGAGTCTTGCACTTACGTCTGCTGCGCGCAAATATGCTG
TCTCACTCTCTCTTCTCCCTCTTCCCCCTCCTTTCTTCCTCCTTCCTTTC
CTTCTCTATTCCCAAAACAGTACACTACTAGCCTCTTACTACTCCTTCTC
ATCGTCAGCGTTCAATCCGAAACGACCAACATGTTCGGCGTGACGGTGAA
GAACAATGGTCTTACCGGCACAGCTGCTGCTGGCACTGCCACTGTGGCCG
GGGCTGGCCCGAGCAAACGCACGCACTCCCCTATGGTGACAGGTACGTCG
GTACTGGGCGTTAAGTACAACGGTGGTGTGATGCTTGCCGCGGATACGTT
GGCCTCGTACGGTTCCTTGGCGCGATTCAAGGACGTGACGCGGTTGAACA
CGGTGGGGGAGCATACCATTTTGGGGGCTGGAGGAGAATTTTCTGATTTC
CAGGCGATCGGGGAGATGCTCGAGAAGCTACACCAGGATGACTTGAATGC
CAATGATGGCTTCGCCCACTCCCCCGCCGAGCTATTTCATTACTTGAGGG
CAATTTTTTACAGCAAGCGAAACAAGTTCAATCCGTTGTGGAATGAGGTA
GGGAAGGAGGGAGGGAGGGAGGGACGGATGGAGGGAGGGAAGGGTGCATA
CAAGCCCTGTTTTTATTTCCTGAATTCAGGTCTTGCCTGATAGATACAAG
GAGGCCATGCCTTTGCTTTGTCACCTGGAGAGGATAGAGATGGAATTTGA
GAGGGTGTGCAGGCGATTGACGCTTCCTTCCTTCCCTCCCTCCCTCCCTC
CGTTGTTCCCTCACACGACCCCAGGTGCTGGTGGGTGGGTACAAGGACGG
CAAGCCTTTCCTCGGCCACCTGGACATGATCGGCACGGCATTCTCCGACG
ATGTGATGGCCACGGGCTTCGGGTCTTACCTGGCGTTGCCCATTATGCGC
AAACGATGGCACGAAAACATGACGGAGGGGGAGGCCCGGGCGTTGTTGGA
GGACTGCATGCGTGTGCTGTTCTACAGGTTCGTCGCCTTTTTGCACGTCC
GTGGGCGTAGTGAAGGCTAATAATCATCTTGGATGTACCCGGCCCCTTCC
TTTTTCATGTGTCGATGGGTCATTCGTTTAATCCATGCCTCCTCAAATCC
ACGCACTTCCCCCCCCCCCCCCCGGGCCTCTGCCTCCCTCCTTCCCTTTC
TTCCTTCTTTTTTGTTTTTCGACAGGGACTGCCGTGCATTGAACAGGATA
CAGATCGCCAAGGCGGATGCGAGTGGCGTGCTGGTCTCGCCGGCGTTTAA
ATTGGAGACAGTCTGGGACCTCGCGTCGTTTTCGGCGCCCAAGGCAGGCA
TGGACTCGGACGGGTCCTGGTAGAGGGAGGGAGAGAGGGAGGGAGGGAGG
GAAGGGAGGGGAGAGGAGGCAAGGAGAGAGAGAGAGTTGCTTACTTGGAA
TAGAGGCGGAATGGGGGGGGCAGGGAGAGAGGGCGGGACGGAGAGGGCGG
AAGGTAGAATGGAGGAAAAAGATTTCACAAAAGAACAAGAAATCAAAAGA
AGAAAGAATAAAAAAGAAAAAGAGAATGAGGAAAAGGAAGAGTTCGAATC
ACCACACACTGGAAGAAGCACATGTGCGCAGGGGCACACAAGAGAACGGC
AACCAAAGCACTCAACACTTGAATCCATCGAAC back to topCoding sequence (CDS) from alignment at chr1:1016903..1019085+ >NO01G03780.2 ID=NO01G03780.2|Name=NO01G03780.2|organism=Nannochloropsis oceanica|type=CDS|length=756bp|location=Sequence derived from alignment at chr1:1016903..1019085+ (Nannochloropsis oceanica) ATGCGAATCCAGAAGACGGTTTCTAGTCACGTGTACACTACTAGCCTCTT ACTACTCCTTCTCATCGTCAGCGTTCAATCCGAAACGACCAACATGTTCG GCGTGACGGTGAAGAACAATGGTCTTACCGGCACAGCTGCTGCTGGCACT GCCACTGTGGCCGGGGCTGGCCCGAGCAAACGCACGCACTCCCCTATGGT GACAGGTACGTCGGTACTGGGCGTTAAGTACAACGGTGGTGTGATGCTTG CCGCGGATACGTTGGCCTCGTACGGTTCCTTGGCGCGATTCAAGGACGTG ACGCGGTTGAACACGGTGGGGGAGCATACCATTTTGGGGGCTGGAGGAGA ATTTTCTGATTTCCAGGCGATCGGGGAGATGCTCGAGAAGCTACACCAGG ATGACTTGAATGCCAATGATGGCTTCGCCCACTCCCCCGCCGAGCTATTT CATTACTTGAGGGCAATTTTTTACAGCAAGCGAAACAAGTTCAATCCGTT GTGGAATGAGGTGCTGGTGGGTGGGTACAAGGACGGCAAGCCTTTCCTCG GCCACCTGGACATGATCGGCACGGCATTCTCCGACGATGTGATGGCCACG GGCTTCGGGTCTTACCTGGCGTTGCCCATTATGCGCAAACGATGGCACGA AAACATGACGGAGGGGGAGGCCCGGGCGTTGTTGGAGGACTGCATGCGTG TGCTGTTCTACAGGTTCGTCGCCTTTTTGCACGTCCGTGGGCGTAGTGAA GGCTAA back to top
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