NO01G03730.1, NO01G03730.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G03730.1
Unique NameNO01G03730.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2176
Alignment locationchr1:998435..1000863 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:998435..1000863 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G03730.1 vs.
Match: XP_005854789.1 (putative membrane protein [Nannochloropsis gaditana CCMP526]; EKU21578.1 putative membrane protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 412.9 bits (1060), Expect = 1.200e-111
Identity = 227/330 (68.79%), Postives = 260/330 (78.79%), Query Frame = 0 
Query:   88 RTCGAITCGLTVLRDRTLRRLLPSQFTGDQWKYYWGITESDKFGKIYEAASSTFFGLWISWFLTFLIGLPAATILGTVFLFYWILAPGLAAYRRNLSFRGGYFARHPRDEGVFGALFSGKVVRVGRITQAEEYNRPEAMVMCVEDEEGRKLRVYAPVLPSYKRVRPGMRCEGLVLSETPEFEELLGVSDLFVPAAGAWVGEYPYIDKVPFKAFLGNKLKKEEENRKRRRKEGLGLKLGMGEEGEEEEE----EEAMSMDF-LEEEDELEGLDKIFE--GGSDGYSRGDEDMFASIWEGSMKRGGRVRRGWEEEEEEEGLLRVKEDEDEER 411
            R+ G  +C LTVLRDRTLRRLLPSQFTGDQWKYYWGITESDKFGKIYEAAS+TFFGLW SWFLTFLIGLPAAT+LGTVFLFYWILAPGLAAYRRN+SFRG YFAR PRD+GVFGALFSG+VVRVGRI QA EYNRPEA+VM +EDE GRKLRVYAP+LPSYK+VRPGMRCEGLVLSE+P+F+EL+GVSD+FVP  GAWVGEYPYIDKVPFKAFL ++          RR+ G+G ++  G EG  EEE    EE +  D    E +E EG  +IF+  GG +G   GD D+FA +WE +M+ G    R  + EEEEE LL    +ED  R
Sbjct:   20 RSRGLASCSLTVLRDRTLRRLLPSQFTGDQWKYYWGITESDKFGKIYEAASATFFGLWTSWFLTFLIGLPAATVLGTVFLFYWILAPGLAAYRRNVSFRGTYFARTPRDDGVFGALFSGRVVRVGRIRQAREYNRPEALVMSMEDESGRKLRVYAPILPSYKKVRPGMRCEGLVLSESPDFDELMGVSDVFVPDCGAWVGEYPYIDKVPFKAFLASRA---------RRRGGMGEEME-GNEGFWEEEGVGGEEYVRPDMGFREGEEEEGDSQIFDSDGGGEG---GDGDVFARVWEEAMRNG----RRRQTEEEEEALL---SEEDRAR 329
The following BLAST results are available for this feature:
BLAST of NO01G03730.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854789.11.200e-11168.79putative membrane protein [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G03730NO01G03730Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G03730.1NO01G03730.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G03730.1.cds1NO01G03730.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03730.1.cds2NO01G03730.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G03730.1 ID=NO01G03730.1|Name=NO01G03730.1|organism=Nannochloropsis oceanica|type=mRNA|length=2176bp
CTTGGTGTTAATACCATGGCCTGTCGGGGTGGAGGAGTGTGTGGGAGTGG
GTGTCTGTGGTGGGATGAGGGTTGAAAGTAGGCGGCTCGAATGGGGTACG
TGACCGGGCATCAGATGAAAGCCACAAGGTCATCGCCCCGCGCCACACTG
ACCGCCAAGATGATAGGCCGCTATGCGCACAGCGGTATGGCACGCAAAAT
CCATTCGAAGAGCGCGCATGTGCGGTGTAATCAAGGCGAGCACATGCACG
GAAATTGACCTCCTCACAAGTTATCTGCGCATGCTCTTTGCCTTCGTGCA
ACAATCGAGAATGCAGACAGCCTTTGCGGCACTGTTTTACAGGAACACGC
GACAATAATGATGAGGTGGTCATGCATTGATGAGGTGTTGGCATGTGTAC
ATTATCAGTTCTATTTTTCAGGCTCCAGTTGTTCTGTTAGGGAGCAGCCG
CGGTGGCTGGATGGGAGGCACAGGCCTAAGAGGGTCTCAACAAAAGCACA
CAGCAAACAGGTTCAATCTAGTGTCCCTTATGCCTTGGCCTGCAGGATTT
GTAGGATATGTTATCTTGAGGGTAAAAGTAGAAGATGGGCGAGTGCTTTG
TACGTCATCTTGACCCCGATGAGCTTGAGCTTTCTTGAACTTTAAAAAAA
CAAGTAGAGCAATACTTTTGACCCCTAACCTACGCATAAATCTACACTTA
CGCCAACTAAGACAATTAAAAGAGAACACGGACAACCGTCGCAGGGCACA
AGTGGTAGTCATCTCCGGCGGGGTCTACAAGGCCTGTTCTAGTCAAAGTA
ATGATGCCGCCCTCAGCATTATCATCATCCATTATGCCGCTTGCGACTCC
TTGCTGCAGCAGTAGCCTCATGCCCCTCCCGCAGCAACAACTCCCGTTTC
ACAACCCGCCATCTCCATACTCTTCCTCTTCTCCCGCTCACTTTTTCTCT
CCCCGTCATCGCCGAGCCACCAGCTCTCCTCTCGCCTTTGGACTTGCCCC
CTCCCTCCCGTGCAACGGGCACAGCGCCACCCTCCACCTGCGCAATCGCC
ATTTCCACGGTCGTACATGTGGCGCCATCACTTGCGGGTTGACCGTCCTC
CGGGACCGCACCCTCCGTCGTCTCCTCCCCTCACAATTCACGGGCGACCA
ATGGAAGTACTACTGGGGTATCACGGAAAGCGATAAATTCGGAAAGATTT
ATGAAGCGGCCTCGTCCACCTTCTTCGGGTTGTGGATCAGCTGGTTCTTG
ACCTTCCTGATAGGGCTACCAGCAGCCACGATTTTGGGAACGGTATTTTT
GTTTTATTGGATCCTGGCGCCGGGCCTGGCAGCATATCGCCGGAATCTAA
GTTTTAGGGGGGGTTATTTTGCACGGCATCCGCGGGATGAGGGAGTGTTC
GGGGCGCTGTTTAGTGGGAAGGTGGTGAGGGTAGGCAGGATAACCCAGGC
AGAGGAATATAATAGACCGGAGGCAATGGTCATGTGTGTGGAGGACGAAG
AAGGGCGTAAATTGAGGGTGTATGCTCCTGTGTTGCCTAGTTATAAGAGG
GTGAGGCCGGGGATGCGATGCGAGGGTTTGGTGTTGAGTGAGACGCCGGA
GTTTGAGGAATTGCTGGGGGTGTCGGATTTGTTTGTGCCGGCCGCGGGGG
CGTGGGTGGGAGAGTATCCCTACATAGATAAGGTTCCCTTTAAGGCTTTT
TTGGGAAACAAGCTGAAAAAGGAGGAGGAGAATAGGAAGAGGCGGCGGAA
GGAGGGTTTGGGGTTGAAGTTGGGCATGGGGGAGGAGGGGGAGGAGGAAG
AGGAGGAGGAGGCGATGTCGATGGACTTTTTGGAAGAGGAAGACGAGCTA
GAGGGATTGGATAAAATTTTCGAAGGCGGGAGTGATGGGTACAGTCGTGG
AGACGAGGACATGTTTGCGAGTATTTGGGAGGGGAGTATGAAGAGGGGAG
GGAGGGTGAGAAGGGGGTGGGAAGAGGAGGAGGAAGAGGAGGGGTTGTTG
CGAGTGAAGGAGGACGAAGACGAAGAGCGACGACGGCGGGGAAGAAGACG
GCGGTTGATAAATTAAAAGAGGAGGGAGGAGTGGGGGGGGGATTCAAAAA
AAGACTCCGATTTGTTCGCAACGCGTTGTTCGAAGCGTGAAATAATGAAG
TAACAATAGACACAGAGCAGGGGGAA
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protein sequence of NO01G03730.1

>NO01G03730.1-protein ID=NO01G03730.1-protein|Name=NO01G03730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=422bp
MMPPSALSSSIMPLATPCCSSSLMPLPQQQLPFHNPPSPYSSSSPAHFFS
PRHRRATSSPLAFGLAPSLPCNGHSATLHLRNRHFHGRTCGAITCGLTVL
RDRTLRRLLPSQFTGDQWKYYWGITESDKFGKIYEAASSTFFGLWISWFL
TFLIGLPAATILGTVFLFYWILAPGLAAYRRNLSFRGGYFARHPRDEGVF
GALFSGKVVRVGRITQAEEYNRPEAMVMCVEDEEGRKLRVYAPVLPSYKR
VRPGMRCEGLVLSETPEFEELLGVSDLFVPAAGAWVGEYPYIDKVPFKAF
LGNKLKKEEENRKRRRKEGLGLKLGMGEEGEEEEEEEAMSMDFLEEEDEL
EGLDKIFEGGSDGYSRGDEDMFASIWEGSMKRGGRVRRGWEEEEEEEGLL
RVKEDEDEERRRRGRRRRLIN*
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mRNA from alignment at chr1:998435..1000863-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G03730.1 ID=NO01G03730.1|Name=NO01G03730.1|organism=Nannochloropsis oceanica|type=mRNA|length=2429bp|location=Sequence derived from alignment at chr1:998435..1000863- (Nannochloropsis oceanica)
CTTGGTGTTAATACCATGGCCTGTCGGGGTGGAGGAGTGTGTGGGAGTGG
GTGTCTGTGGTGGGATGAGGGTTGAAAGTAGGCGGCTCGAATGGGGTACG
TGACCGGGCATCAGATGAAAGCCACAAGGTCATCGCCCCGCGCCACACTG
ACCGCCAAGATGATAGGCCGCTATGCGCACAGCGGTATGGCACGCAAAAT
CCATTCGAAGAGCGCGCATGTGCGGTGTAATCAAGGCGAGCACATGCACG
GAAATTGACCTCCTCACAAGTTATCTGCGCATGCTCTTTGCCTTCGTGCA
ACAATCGAGAATGCAGACAGCCTTTGCGGCACTGTTTTACAGGAACACGC
GACAATAATGATGAGGTGGTCATGCATTGATGAGGTGTTGGCATGTGTAC
ATTATCAGTTCTATTTTTCAGGCTCCAGTTGTTCTGTTAGGGAGCAGCCG
CGGTGGCTGGATGGGAGGCACAGGCCTAAGAGGGTCTCAACAAAAGCACA
CAGCAAACAGGTTCAATCTAGTGTCCCTTATGCCTTGGCCTGCAGGATTT
GTAGGATATGTTATCTTGAGGGTAAAAGTAGAAGATGGGCGAGTGCTTTG
TACGTCATCTTGACCCCGATGAGCTTGAGCTTTCTTGAACTTTAAAAAAA
CAAGTAGAGCAATACTTTTGACCCCTAACCTACGCATAAATCTACACTTA
CGCCAACTAAGACAATTAAAAGAGAACACGGACAACCGTCGCAGGGCACA
AGTGGTAGTCATCTCCGGCGGGGTCTACAAGGCCTGTTCTAGTCAAAGTA
ATGATGCCGCCCTCAGCATTATCATCATCCATTATGCCGCTTGCGACTCC
TTGCTGCAGCAGTAGCCTCATGGTAAGTCCAAATTAGCCTCACTTTGATG
CAGCAACCCTTTGCAGGTTTCCTGTTTGCTGTGGTCGCTTGTGGCTGTGA
TCTTGCCTGTCCTCCCGCCTCACTCCATCATGCCCTGGTCGTCCTGAGGA
ATCAGTTCGGCAGACCCCATCTTGATGAATCTGGTATCTCATTCTTATGT
CCACCCCTTTCCTTTTTAGCCCACAGCTCACACTCACCATCTCTTTCCCT
TTCCCTATCCTTTTTCACCCCCCAGCCCCTCCCGCAGCAACAACTCCCGT
TTCACAACCCGCCATCTCCATACTCTTCCTCTTCTCCCGCTCACTTTTTC
TCTCCCCGTCATCGCCGAGCCACCAGCTCTCCTCTCGCCTTTGGACTTGC
CCCCTCCCTCCCGTGCAACGGGCACAGCGCCACCCTCCACCTGCGCAATC
GCCATTTCCACGGTCGTACATGTGGCGCCATCACTTGCGGGTTGACCGTC
CTCCGGGACCGCACCCTCCGTCGTCTCCTCCCCTCACAATTCACGGGCGA
CCAATGGAAGTACTACTGGGGTATCACGGAAAGCGATAAATTCGGAAAGA
TTTATGAAGCGGCCTCGTCCACCTTCTTCGGGTTGTGGATCAGCTGGTTC
TTGACCTTCCTGATAGGGCTACCAGCAGCCACGATTTTGGGAACGGTATT
TTTGTTTTATTGGATCCTGGCGCCGGGCCTGGCAGCATATCGCCGGAATC
TAAGTTTTAGGGGGGGTTATTTTGCACGGCATCCGCGGGATGAGGGAGTG
TTCGGGGCGCTGTTTAGTGGGAAGGTGGTGAGGGTAGGCAGGATAACCCA
GGCAGAGGAATATAATAGACCGGAGGCAATGGTCATGTGTGTGGAGGACG
AAGAAGGGCGTAAATTGAGGGTGTATGCTCCTGTGTTGCCTAGTTATAAG
AGGGTGAGGCCGGGGATGCGATGCGAGGGTTTGGTGTTGAGTGAGACGCC
GGAGTTTGAGGAATTGCTGGGGGTGTCGGATTTGTTTGTGCCGGCCGCGG
GGGCGTGGGTGGGAGAGTATCCCTACATAGATAAGGTTCCCTTTAAGGCT
TTTTTGGGAAACAAGCTGAAAAAGGAGGAGGAGAATAGGAAGAGGCGGCG
GAAGGAGGGTTTGGGGTTGAAGTTGGGCATGGGGGAGGAGGGGGAGGAGG
AAGAGGAGGAGGAGGCGATGTCGATGGACTTTTTGGAAGAGGAAGACGAG
CTAGAGGGATTGGATAAAATTTTCGAAGGCGGGAGTGATGGGTACAGTCG
TGGAGACGAGGACATGTTTGCGAGTATTTGGGAGGGGAGTATGAAGAGGG
GAGGGAGGGTGAGAAGGGGGTGGGAAGAGGAGGAGGAAGAGGAGGGGTTG
TTGCGAGTGAAGGAGGACGAAGACGAAGAGCGACGACGGCGGGGAAGAAG
ACGGCGGTTGATAAATTAAAAGAGGAGGGAGGAGTGGGGGGGGGATTCAA
AAAAAGACTCCGATTTGTTCGCAACGCGTTGTTCGAAGCGTGAAATAATG
AAGTAACAATAGACACAGAGCAGGGGGAA
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Coding sequence (CDS) from alignment at chr1:998435..1000863-

>NO01G03730.1 ID=NO01G03730.1|Name=NO01G03730.1|organism=Nannochloropsis oceanica|type=CDS|length=1266bp|location=Sequence derived from alignment at chr1:998435..1000863- (Nannochloropsis oceanica)
ATGATGCCGCCCTCAGCATTATCATCATCCATTATGCCGCTTGCGACTCC
TTGCTGCAGCAGTAGCCTCATGCCCCTCCCGCAGCAACAACTCCCGTTTC
ACAACCCGCCATCTCCATACTCTTCCTCTTCTCCCGCTCACTTTTTCTCT
CCCCGTCATCGCCGAGCCACCAGCTCTCCTCTCGCCTTTGGACTTGCCCC
CTCCCTCCCGTGCAACGGGCACAGCGCCACCCTCCACCTGCGCAATCGCC
ATTTCCACGGTCGTACATGTGGCGCCATCACTTGCGGGTTGACCGTCCTC
CGGGACCGCACCCTCCGTCGTCTCCTCCCCTCACAATTCACGGGCGACCA
ATGGAAGTACTACTGGGGTATCACGGAAAGCGATAAATTCGGAAAGATTT
ATGAAGCGGCCTCGTCCACCTTCTTCGGGTTGTGGATCAGCTGGTTCTTG
ACCTTCCTGATAGGGCTACCAGCAGCCACGATTTTGGGAACGGTATTTTT
GTTTTATTGGATCCTGGCGCCGGGCCTGGCAGCATATCGCCGGAATCTAA
GTTTTAGGGGGGGTTATTTTGCACGGCATCCGCGGGATGAGGGAGTGTTC
GGGGCGCTGTTTAGTGGGAAGGTGGTGAGGGTAGGCAGGATAACCCAGGC
AGAGGAATATAATAGACCGGAGGCAATGGTCATGTGTGTGGAGGACGAAG
AAGGGCGTAAATTGAGGGTGTATGCTCCTGTGTTGCCTAGTTATAAGAGG
GTGAGGCCGGGGATGCGATGCGAGGGTTTGGTGTTGAGTGAGACGCCGGA
GTTTGAGGAATTGCTGGGGGTGTCGGATTTGTTTGTGCCGGCCGCGGGGG
CGTGGGTGGGAGAGTATCCCTACATAGATAAGGTTCCCTTTAAGGCTTTT
TTGGGAAACAAGCTGAAAAAGGAGGAGGAGAATAGGAAGAGGCGGCGGAA
GGAGGGTTTGGGGTTGAAGTTGGGCATGGGGGAGGAGGGGGAGGAGGAAG
AGGAGGAGGAGGCGATGTCGATGGACTTTTTGGAAGAGGAAGACGAGCTA
GAGGGATTGGATAAAATTTTCGAAGGCGGGAGTGATGGGTACAGTCGTGG
AGACGAGGACATGTTTGCGAGTATTTGGGAGGGGAGTATGAAGAGGGGAG
GGAGGGTGAGAAGGGGGTGGGAAGAGGAGGAGGAAGAGGAGGGGTTGTTG
CGAGTGAAGGAGGACGAAGACGAAGAGCGACGACGGCGGGGAAGAAGACG
GCGGTTGATAAATTAA
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Synonyms
Publications