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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr1 | genome | chr1:988259..991133 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G03690.1 vs.
Match: EWM29310.1 (hypothetical protein Naga_100152g11 [Nannochloropsis gaditana]) HSP 1 Score: 434.5 bits (1116), Expect = 6.600e-118 Identity = 260/568 (45.77%), Postives = 344/568 (60.56%), Query Frame = 0
Query: 177 DDDDGLPRGFVAGTIITHPPPSCASSKCNSSRNHPPPLFQSSS----VCNNSLSIPHTPSEGISTNTPKHISPAP------------SPSSHCPASSVPPSPHAAIASSEFQQSISSLTGHVRETSFSKMPPLHRFLTRGISNIKEHVSHLLGGEPLLVAVRRYIRLHKQLLGEYPLGMPPRPKNEYLAALDQKFAELLEHHDLLILIPVFVLCPVVFSQHFLLEIPALYGLWWYHPERVTALVDIRKGTLMPPRYTVLKCGWQALWARMVEIEGLDVHLNAKVKSIRRPCMSMKGKLVVEKKGGGRGGEGGGGKGGEAGGEGGERGQAGR-NAVETYEFDFIVLAGSMKSIFPLLLDATNEEQELAEAATEFSLCSTIFEAEAVTGEQPVKLYPLSKGCAATGQVFAQINPRLFVHSSTAVAAASPRDEQQQEWDGDYDDKDVHGQSGSRSNSSSSSNCVASLPAAKEPRIVYQFLHRAPNPADFAVLTRRLKMHCDDQSFRELVMLKQCLWRFFPHFPNEDLLKKGWLWRLQEMQGQQGTLYLGASVCMDALNEVLLYNEVVLERI 728
D D+G P G I+ A C+ +H +SSS V +N + P S ++ P +P +PS SS S AS+EF++SIS++ +R+TS S+M P+ R +RGISNIK+ V LLG EP++ AVRRY R HKQ+LGEYPLGMPPRPK E L+ LD+ F + L+ HDLL L+ VFVL P++ S L+E+PA YGLW YHP+RV LVD R+GTL PRYTVLKCGWQ LW + IEGL VHLN+ +KSIRRP M KG LVVE + G ++ +G+ + +EFD IV+A S+K+ PL +DA++EE++LA + E++LCST+FE++ + GE+P++L+P K A+GQVFAQ N RL V AA Q EW + + C + P AK+PRIV+QFLHRAP+ AD +L RRL+M DDQSF E +LKQCLW+FFPHFP + LL+ GW WRLQ++QG TLYLGAS CMDAL EVLLYN+ V++R+
Sbjct: 27 DRDEGSP---CYGHQISTSSDKTAQVACDLPNSHREKDMKSSSRILSVRDNVPNPPANNSPPLTFEAPSKAEQSPVFSKVKTTEGRSAPSIVPSLSSFSRSASNVAASTEFKRSISNMGDKIRDTSTSEMTPMRRLFSRGISNIKDQVGSLLGEEPIVGAVRRYTRAHKQILGEYPLGMPPRPKPEDLSELDKTFGDWLKEHDLLDLVAVFVLFPLMLSYQCLMEMPAFYGLWCYHPQRVMGLVDSRRGTLKLPRYTVLKCGWQTLWTHIAVIEGLHVHLNSTIKSIRRPWMGKKGLLVVESRESSCA----------TGAVTPDKICSGKVPGPKMHEFDLIVIACSLKTAVPLFVDASHEERQLASSLEEYALCSTMFESDIIPGERPIELFPFPKRGGASGQVFAQFNSRLLVRKLPDEAA------PQVEW----------------GCVEAPTACKGASP-AKDPRIVFQFLHRAPSAADVKMLRRRLEMFFDDQSFNEPTILKQCLWKFFPHFPTKALLESGWPWRLQKLQGHNSTLYLGASACMDALEEVLLYNDAVVQRL 558
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G03690.1 ID=NO01G03690.1|Name=NO01G03690.1|organism=Nannochloropsis oceanica|type=mRNA|length=2763bp
CAGGTGCCGACTTATTTTCGAGATGTTTCCTTTTTTTTCTATATTAGCCT
TAAGTCTCCATCTTTTTTGGTTTCCATCCTATTCCCTCGCACCCTTGCTG
TCACCTCTACCATGTACATGGCTAACGGATGGGAGCATACAGATGCTAAA
TACGCGCCTTCGTCGTATTGCAGATCCCATCACACTCAAGCAAAAGAAAG
CTATGGTCACATACATGCAAGCACAGACGCACAGGTGCAAGTCAAGACAC
AAATCATGCACAAAGCTCAGGCCATGGCATTCAAAGAGCAATCAAACCAG
TGTAATCTTCCCTACCCCCCTCCAACACTTAAATTTTGAATTTTCGAGGT
TCCGACTCCAAGTATCCTATTCTATATGACCCATAATCCCAAGTGCACAG
TTTCAAATAATTACAGGGAGGCGCACGCCCCAATGTCACTTATGTCGTCG
TCGCCCGCGTCCCCAGTCGTAAAAGCCGTCCACAGCCATGCCAACACCAG
TTGGCAAGACAAGAGTACGAGGCATGCCAAGAAAATCGTTGTTATTGGCG
CGGGTGCAGCCGGCTTGCATGCAGCGGCCCGTCTGCGGGCTCGAGGCTTC
ACGGACATATCCATCTTCGAGGCGGGTTGTGCGGTGGGGGGGCGGTGCGT
TTCACGGGTTATGTACGACGGAAGTGTCCCTGTGGAAGCGGGCTTTCTAG
CCAACATCGTGAGCGAGGCGAGAAACCCTTTGGCTGAGCTGGTGCGCGAG
TACGGCCTCGCCGACCAAGAATTGGAGGTTGGGACAAAGTCCCCAGCCAT
TTCGCGGGAAGAAAAGCATGGAGAAAGCCACGAAGGTGCCAAGGATTGTA
AAACTCAGCTCGACATAGAGGTCACACGTTTCTCTAATCTGGCCGATGAC
ATGGATGATGACGATGGTCTTCCCCGCGGCTTCGTCGCAGGCACAATCAT
CACTCATCCACCTCCATCCTGCGCTAGCAGCAAATGCAACAGCTCCAGAA
ATCACCCGCCACCACTTTTTCAATCTTCTTCGGTCTGTAATAATTCTCTC
TCCATACCGCACACGCCCTCCGAAGGCATCTCCACCAACACGCCCAAGCA
TATAAGCCCCGCTCCGTCTCCTTCCTCCCACTGCCCAGCCTCCTCTGTCC
CCCCTTCGCCGCACGCCGCAATAGCCAGCTCCGAATTCCAACAAAGCATA
AGCAGCCTTACTGGACATGTCCGTGAGACTAGCTTTTCCAAAATGCCCCC
CCTGCACCGTTTTCTAACCCGGGGTATCTCCAACATAAAAGAACACGTCA
GCCATCTCCTCGGTGGAGAGCCCTTGCTGGTTGCTGTCCGTCGATACATC
CGCTTACACAAACAGTTGCTGGGTGAGTACCCACTTGGTATGCCTCCCCG
TCCGAAGAATGAGTATCTCGCGGCGCTGGACCAAAAATTTGCGGAATTGC
TGGAGCATCACGATCTCTTAATTCTAATTCCTGTCTTTGTGTTGTGCCCT
GTGGTGTTCAGTCAACATTTCTTGCTGGAGATCCCGGCGTTGTATGGGCT
ATGGTGGTATCACCCGGAGAGAGTGACGGCCTTGGTTGACATTCGGAAAG
GGACGTTGATGCCGCCCCGCTATACGGTGCTGAAGTGTGGTTGGCAAGCG
CTGTGGGCTCGCATGGTGGAGATTGAAGGGTTGGACGTACATTTAAATGC
TAAAGTCAAATCTATTCGTCGGCCATGCATGAGTATGAAAGGGAAGCTTG
TAGTAGAAAAAAAGGGAGGGGGAAGGGGAGGAGAAGGAGGAGGGGGGAAA
GGAGGAGAAGCAGGAGGAGAAGGAGGAGAAAGAGGGCAGGCAGGTAGAAA
CGCGGTGGAAACGTACGAGTTTGACTTTATCGTCTTGGCGGGCAGTATGA
AATCTATTTTTCCCCTCCTTCTCGATGCCACGAATGAGGAACAAGAGCTT
GCAGAGGCCGCGACTGAATTCAGTCTGTGCAGCACTATTTTTGAAGCGGA
GGCCGTGACAGGTGAGCAGCCTGTCAAGCTCTATCCCTTATCCAAGGGAT
GCGCTGCCACGGGCCAGGTCTTCGCTCAGATCAATCCCCGGCTATTTGTA
CACAGTTCCACGGCAGTAGCTGCAGCGAGCCCTCGAGACGAGCAGCAGCA
AGAGTGGGACGGCGACTACGACGATAAAGACGTCCACGGCCAGAGTGGTA
GCCGCAGTAACAGCAGCAGTAGCAGCAACTGCGTTGCCTCTCTGCCTGCG
GCCAAAGAACCTCGCATAGTCTATCAGTTCCTTCATCGGGCCCCAAATCC
AGCTGACTTCGCCGTGCTCACACGGCGACTCAAAATGCATTGCGACGATC
AGTCATTCCGTGAACTGGTGATGCTCAAGCAGTGTCTGTGGCGGTTCTTC
CCACACTTTCCAAACGAGGATTTGCTCAAAAAAGGGTGGCTCTGGCGGCT
GCAAGAGATGCAAGGGCAGCAAGGCACATTATACTTGGGAGCGAGTGTGT
GTATGGATGCTTTGAATGAGGTTTTGCTTTATAACGAAGTGGTGCTGGAG
CGGATTTTGGGAGATTGAGTTTATCAGGAAGAATGGAGAGAAGGGTGTAG
CTGTGAAGGAAGGCAGGTCTAGTTTGGAAAAAAGTATGGGCTCAAATGAA
GGAAGTGTACGTGTGCACGCAAGCATATAGGATTACGCTGTACTGAACAC
ATTTTGAAGTTGTTGCTATGTTGTGTGAATGTAGAAGGCAGAAAATTAAA
TGTAAACCAGCGT back to topprotein sequence of NO01G03690.1 >NO01G03690.1-protein ID=NO01G03690.1-protein|Name=NO01G03690.1|organism=Nannochloropsis oceanica|type=polypeptide|length=731bp
MTHNPKCTVSNNYREAHAPMSLMSSSPASPVVKAVHSHANTSWQDKSTRH
AKKIVVIGAGAAGLHAAARLRARGFTDISIFEAGCAVGGRCVSRVMYDGS
VPVEAGFLANIVSEARNPLAELVREYGLADQELEVGTKSPAISREEKHGE
SHEGAKDCKTQLDIEVTRFSNLADDMDDDDGLPRGFVAGTIITHPPPSCA
SSKCNSSRNHPPPLFQSSSVCNNSLSIPHTPSEGISTNTPKHISPAPSPS
SHCPASSVPPSPHAAIASSEFQQSISSLTGHVRETSFSKMPPLHRFLTRG
ISNIKEHVSHLLGGEPLLVAVRRYIRLHKQLLGEYPLGMPPRPKNEYLAA
LDQKFAELLEHHDLLILIPVFVLCPVVFSQHFLLEIPALYGLWWYHPERV
TALVDIRKGTLMPPRYTVLKCGWQALWARMVEIEGLDVHLNAKVKSIRRP
CMSMKGKLVVEKKGGGRGGEGGGGKGGEAGGEGGERGQAGRNAVETYEFD
FIVLAGSMKSIFPLLLDATNEEQELAEAATEFSLCSTIFEAEAVTGEQPV
KLYPLSKGCAATGQVFAQINPRLFVHSSTAVAAASPRDEQQQEWDGDYDD
KDVHGQSGSRSNSSSSSNCVASLPAAKEPRIVYQFLHRAPNPADFAVLTR
RLKMHCDDQSFRELVMLKQCLWRFFPHFPNEDLLKKGWLWRLQEMQGQQG
TLYLGASVCMDALNEVLLYNEVVLERILGD* back to topmRNA from alignment at chr1:988259..991133- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G03690.1 ID=NO01G03690.1|Name=NO01G03690.1|organism=Nannochloropsis oceanica|type=mRNA|length=2875bp|location=Sequence derived from alignment at chr1:988259..991133- (Nannochloropsis oceanica)
CAGGTGCCGACTTATTTTCGAGATGTTTCCTTTTTTTTCTATATTAGCCT
TAAGTCTCCATCTTTTTTGGTTTCCATCCTATTCCCTCGCACCCTTGCTG
TCACCTCTACCATGTACATGGCTAACGGATGGGAGCATACAGATGCTAAA
TACGCGCCTTCGTCGTATTGCAGATCCCATCACACTCAAGCAAAAGAAAG
CTATGGTCACATACATGCAAGCACAGACGCACAGGTGCAAGTCAAGACAC
AAATCATGCACAAAGCTCAGGCCATGGCATTCAAAGAGCAATCAAACCAG
TGTAATCTTCCCTACCCCCCTCCAACACTTAAATTTTGAATTTTCGAGGT
TCCGACTCCAAGTATCCTATTCTATATGACCCATAATCCCAAGTGCACAG
TTTCAAATAATTACAGGGAGGCGCACGCCCCAATGTCACTTATGTCGTCG
TCGCCCGCGTCCCCAGTCGTAAAAGCCGTCCACAGCCATGCCAACACCAG
TTGGCAAGACAAGAGTACGAGGCATGCCAAGAAAATCGTTGTTATTGGCG
CGGGTGCAGCCGGCTTGCATGCAGCGGCCCGTCTGCGGGCTCGAGGCTTC
ACGGACATATCCATCTTCGAGGCGGGTTGTGCGGTGGGGGGGCGGTGCGT
TTCACGGGTTATGTACGACGGAAGTGTCCCTGTGGAAGCGGGCTTTCTAG
CCAACATCGTGAGCGAGGCGAGAAACCCTTTGGCTGAGCTGGTGGTAAGA
AGAGAGGATGTCCTAGGGACAAAAGAAACATGAGATGGTAAGCAGACGGA
TGGGGATGTCTCCATGTCCTCTGATTTCCTCTTTCTGCCTTCCCTCCATC
CATTAGCGCGAGTACGGCCTCGCCGACCAAGAATTGGAGGTTGGGACAAA
GTCCCCAGCCATTTCGCGGGAAGAAAAGCATGGAGAAAGCCACGAAGGTG
CCAAGGATTGTAAAACTCAGCTCGACATAGAGGTCACACGTTTCTCTAAT
CTGGCCGATGACATGGATGATGACGATGGTCTTCCCCGCGGCTTCGTCGC
AGGCACAATCATCACTCATCCACCTCCATCCTGCGCTAGCAGCAAATGCA
ACAGCTCCAGAAATCACCCGCCACCACTTTTTCAATCTTCTTCGGTCTGT
AATAATTCTCTCTCCATACCGCACACGCCCTCCGAAGGCATCTCCACCAA
CACGCCCAAGCATATAAGCCCCGCTCCGTCTCCTTCCTCCCACTGCCCAG
CCTCCTCTGTCCCCCCTTCGCCGCACGCCGCAATAGCCAGCTCCGAATTC
CAACAAAGCATAAGCAGCCTTACTGGACATGTCCGTGAGACTAGCTTTTC
CAAAATGCCCCCCCTGCACCGTTTTCTAACCCGGGGTATCTCCAACATAA
AAGAACACGTCAGCCATCTCCTCGGTGGAGAGCCCTTGCTGGTTGCTGTC
CGTCGATACATCCGCTTACACAAACAGTTGCTGGGTGAGTACCCACTTGG
TATGCCTCCCCGTCCGAAGAATGAGTATCTCGCGGCGCTGGACCAAAAAT
TTGCGGAATTGCTGGAGCATCACGATCTCTTAATTCTAATTCCTGTCTTT
GTGTTGTGCCCTGTGGTGTTCAGTCAACATTTCTTGCTGGAGATCCCGGC
GTTGTATGGGCTATGGTGGTATCACCCGGAGAGAGTGACGGCCTTGGTTG
ACATTCGGAAAGGGACGTTGATGCCGCCCCGCTATACGGTGCTGAAGTGT
GGTTGGCAAGCGCTGTGGGCTCGCATGGTGGAGATTGAAGGGTTGGACGT
ACATTTAAATGCTAAAGTCAAATCTATTCGTCGGCCATGCATGAGTATGA
AAGGGAAGCTTGTAGTAGAAAAAAAGGGAGGGGGAAGGGGAGGAGAAGGA
GGAGGGGGGAAAGGAGGAGAAGCAGGAGGAGAAGGAGGAGAAAGAGGGCA
GGCAGGTAGAAACGCGGTGGAAACGTACGAGTTTGACTTTATCGTCTTGG
CGGGCAGTATGAAATCTATTTTTCCCCTCCTTCTCGATGCCACGAATGAG
GAACAAGAGCTTGCAGAGGCCGCGACTGAATTCAGTCTGTGCAGCACTAT
TTTTGAAGCGGAGGCCGTGACAGGTGAGCAGCCTGTCAAGCTCTATCCCT
TATCCAAGGGATGCGCTGCCACGGGCCAGGTCTTCGCTCAGATCAATCCC
CGGCTATTTGTACACAGTTCCACGGCAGTAGCTGCAGCGAGCCCTCGAGA
CGAGCAGCAGCAAGAGTGGGACGGCGACTACGACGATAAAGACGTCCACG
GCCAGAGTGGTAGCCGCAGTAACAGCAGCAGTAGCAGCAACTGCGTTGCC
TCTCTGCCTGCGGCCAAAGAACCTCGCATAGTCTATCAGTTCCTTCATCG
GGCCCCAAATCCAGCTGACTTCGCCGTGCTCACACGGCGACTCAAAATGC
ATTGCGACGATCAGTCATTCCGTGAACTGGTGATGCTCAAGCAGTGTCTG
TGGCGGTTCTTCCCACACTTTCCAAACGAGGATTTGCTCAAAAAAGGGTG
GCTCTGGCGGCTGCAAGAGATGCAAGGGCAGCAAGGCACATTATACTTGG
GAGCGAGTGTGTGTATGGATGCTTTGAATGAGGTTTTGCTTTATAACGAA
GTGGTGCTGGAGCGGATTTTGGGAGATTGAGTTTATCAGGAAGAATGGAG
AGAAGGGTGTAGCTGTGAAGGAAGGCAGGTCTAGTTTGGAAAAAAGTATG
GGCTCAAATGAAGGAAGTGTACGTGTGCACGCAAGCATATAGGATTACGC
TGTACTGAACACATTTTGAAGTTGTTGCTATGTTGTGTGAATGTAGAAGG
CAGAAAATTAAATGTAAACCAGCGT back to topCoding sequence (CDS) from alignment at chr1:988259..991133- >NO01G03690.1 ID=NO01G03690.1|Name=NO01G03690.1|organism=Nannochloropsis oceanica|type=CDS|length=2193bp|location=Sequence derived from alignment at chr1:988259..991133- (Nannochloropsis oceanica)
ATGACCCATAATCCCAAGTGCACAGTTTCAAATAATTACAGGGAGGCGCA
CGCCCCAATGTCACTTATGTCGTCGTCGCCCGCGTCCCCAGTCGTAAAAG
CCGTCCACAGCCATGCCAACACCAGTTGGCAAGACAAGAGTACGAGGCAT
GCCAAGAAAATCGTTGTTATTGGCGCGGGTGCAGCCGGCTTGCATGCAGC
GGCCCGTCTGCGGGCTCGAGGCTTCACGGACATATCCATCTTCGAGGCGG
GTTGTGCGGTGGGGGGGCGGTGCGTTTCACGGGTTATGTACGACGGAAGT
GTCCCTGTGGAAGCGGGCTTTCTAGCCAACATCGTGAGCGAGGCGAGAAA
CCCTTTGGCTGAGCTGGTGCGCGAGTACGGCCTCGCCGACCAAGAATTGG
AGGTTGGGACAAAGTCCCCAGCCATTTCGCGGGAAGAAAAGCATGGAGAA
AGCCACGAAGGTGCCAAGGATTGTAAAACTCAGCTCGACATAGAGGTCAC
ACGTTTCTCTAATCTGGCCGATGACATGGATGATGACGATGGTCTTCCCC
GCGGCTTCGTCGCAGGCACAATCATCACTCATCCACCTCCATCCTGCGCT
AGCAGCAAATGCAACAGCTCCAGAAATCACCCGCCACCACTTTTTCAATC
TTCTTCGGTCTGTAATAATTCTCTCTCCATACCGCACACGCCCTCCGAAG
GCATCTCCACCAACACGCCCAAGCATATAAGCCCCGCTCCGTCTCCTTCC
TCCCACTGCCCAGCCTCCTCTGTCCCCCCTTCGCCGCACGCCGCAATAGC
CAGCTCCGAATTCCAACAAAGCATAAGCAGCCTTACTGGACATGTCCGTG
AGACTAGCTTTTCCAAAATGCCCCCCCTGCACCGTTTTCTAACCCGGGGT
ATCTCCAACATAAAAGAACACGTCAGCCATCTCCTCGGTGGAGAGCCCTT
GCTGGTTGCTGTCCGTCGATACATCCGCTTACACAAACAGTTGCTGGGTG
AGTACCCACTTGGTATGCCTCCCCGTCCGAAGAATGAGTATCTCGCGGCG
CTGGACCAAAAATTTGCGGAATTGCTGGAGCATCACGATCTCTTAATTCT
AATTCCTGTCTTTGTGTTGTGCCCTGTGGTGTTCAGTCAACATTTCTTGC
TGGAGATCCCGGCGTTGTATGGGCTATGGTGGTATCACCCGGAGAGAGTG
ACGGCCTTGGTTGACATTCGGAAAGGGACGTTGATGCCGCCCCGCTATAC
GGTGCTGAAGTGTGGTTGGCAAGCGCTGTGGGCTCGCATGGTGGAGATTG
AAGGGTTGGACGTACATTTAAATGCTAAAGTCAAATCTATTCGTCGGCCA
TGCATGAGTATGAAAGGGAAGCTTGTAGTAGAAAAAAAGGGAGGGGGAAG
GGGAGGAGAAGGAGGAGGGGGGAAAGGAGGAGAAGCAGGAGGAGAAGGAG
GAGAAAGAGGGCAGGCAGGTAGAAACGCGGTGGAAACGTACGAGTTTGAC
TTTATCGTCTTGGCGGGCAGTATGAAATCTATTTTTCCCCTCCTTCTCGA
TGCCACGAATGAGGAACAAGAGCTTGCAGAGGCCGCGACTGAATTCAGTC
TGTGCAGCACTATTTTTGAAGCGGAGGCCGTGACAGGTGAGCAGCCTGTC
AAGCTCTATCCCTTATCCAAGGGATGCGCTGCCACGGGCCAGGTCTTCGC
TCAGATCAATCCCCGGCTATTTGTACACAGTTCCACGGCAGTAGCTGCAG
CGAGCCCTCGAGACGAGCAGCAGCAAGAGTGGGACGGCGACTACGACGAT
AAAGACGTCCACGGCCAGAGTGGTAGCCGCAGTAACAGCAGCAGTAGCAG
CAACTGCGTTGCCTCTCTGCCTGCGGCCAAAGAACCTCGCATAGTCTATC
AGTTCCTTCATCGGGCCCCAAATCCAGCTGACTTCGCCGTGCTCACACGG
CGACTCAAAATGCATTGCGACGATCAGTCATTCCGTGAACTGGTGATGCT
CAAGCAGTGTCTGTGGCGGTTCTTCCCACACTTTCCAAACGAGGATTTGC
TCAAAAAAGGGTGGCTCTGGCGGCTGCAAGAGATGCAAGGGCAGCAAGGC
ACATTATACTTGGGAGCGAGTGTGTGTATGGATGCTTTGAATGAGGTTTT
GCTTTATAACGAAGTGGTGCTGGAGCGGATTTTGGGAGATTGA back to top
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