NO01G03610.1, NO01G03610.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G03610.1
Unique NameNO01G03610.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length867
Alignment locationchr1:956304..957170 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:956304..957170 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO01G03610.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G03610NO01G03610Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G03610.1NO01G03610.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G03610.1.cds1NO01G03610.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G03610.1 ID=NO01G03610.1|Name=NO01G03610.1|organism=Nannochloropsis oceanica|type=mRNA|length=867bp
CCCTCCCGTGCTTTCACGCATTTGCGCTCCAAATTAAATAGACACCAAAT
TACACCCTTAATGGGCACATACAACAGAGAACCAATCATGGGTACCCAAA
AAAGAAGGAGTGGGGAGTGGGGAGCACGTTAGACTTCCCACATTTCTTCT
TCCCTCCCTCCCTTTGCCCCCTCTTTGCCATAACCCCCGATGTAAGCCCT
CATTTCTCCGTCATACCCCTCTCTTCCTCATACTCACACCCTAACCATTT
TCTCGCGGTCGTTTTCTCCCCTCGTCGCCCTAAATTTCTATGCTTTCTTA
TTATCTTACAATGCCTCTCGGCTTGTGCTCGTGCTTCGGAAATATGGCGC
AGAGCCATCTGCCATTCTTATGTCCCTCTCTTCACGTGATTACTTTTGTG
TATCTTTTTCTGTCGTCTTCTCTTCTGCTGGAAATGCCCTACTCACCCTG
GACCATCTGATCCACCCCCCCAAAAAAATCTTGTGTGCCTTAAGTTTGGC
GCACGTATGTATAGAAATCTCTAATCGCTCGGCCACCGGAGACCAGAATC
TAAATGGAGCCGTCCCTCTTTTTCCTACCTTTCTTCACTTTTTTGTCTTC
AGTATGTTATTCTTACTACCTAAGGAGAAGGAGGAGGAGGAAGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGG
AGGAAGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGGGCAGGAAAAG
GAGGAGGAGGAGGAGGAGGAAGAGGAGGAAGAGGAGGAAGAGGAGGAAGA
GGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGGCCTTC
CAGTTTGCATTCTCTGA
back to top

protein sequence of NO01G03610.1

>NO01G03610.1-protein ID=NO01G03610.1-protein|Name=NO01G03610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=166bp
MSLSSRDYFCVSFSVVFSSAGNALLTLDHLIHPPKKILCALSLAHVCIEI
SNRSATGDQNLNGAVPLFPTFLHFFVFSMLFLLPKEKEEEEEEEEEEEEE
EEEEEEEEEEEEEEEEEEEEEEEGQEKEEEEEEEEEEEEEEEEEEEEEEE
EEEEEEEEGLPVCIL*
back to top

mRNA from alignment at chr1:956304..957170+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G03610.1 ID=NO01G03610.1|Name=NO01G03610.1|organism=Nannochloropsis oceanica|type=mRNA|length=867bp|location=Sequence derived from alignment at chr1:956304..957170+ (Nannochloropsis oceanica)
CCCTCCCGTGCTTTCACGCATTTGCGCTCCAAATTAAATAGACACCAAAT TACACCCTTAATGGGCACATACAACAGAGAACCAATCATGGGTACCCAAA AAAGAAGGAGTGGGGAGTGGGGAGCACGTTAGACTTCCCACATTTCTTCT TCCCTCCCTCCCTTTGCCCCCTCTTTGCCATAACCCCCGATGTAAGCCCT CATTTCTCCGTCATACCCCTCTCTTCCTCATACTCACACCCTAACCATTT TCTCGCGGTCGTTTTCTCCCCTCGTCGCCCTAAATTTCTATGCTTTCTTA TTATCTTACAATGCCTCTCGGCTTGTGCTCGTGCTTCGGAAATATGGCGC AGAGCCATCTGCCATTCTTATGTCCCTCTCTTCACGTGATTACTTTTGTG TATCTTTTTCTGTCGTCTTCTCTTCTGCTGGAAATGCCCTACTCACCCTG GACCATCTGATCCACCCCCCCAAAAAAATCTTGTGTGCCTTAAGTTTGGC GCACGTATGTATAGAAATCTCTAATCGCTCGGCCACCGGAGACCAGAATC TAAATGGAGCCGTCCCTCTTTTTCCTACCTTTCTTCACTTTTTTGTCTTC AGTATGTTATTCTTACTACCTAAGGAGAAGGAGGAGGAGGAAGAGGAGGA GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGG AGGAAGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGGGCAGGAAAAG GAGGAGGAGGAGGAGGAGGAAGAGGAGGAAGAGGAGGAAGAGGAGGAAGA GGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGGCCTTC CAGTTTGCATTCTCTGA
back to top

Coding sequence (CDS) from alignment at chr1:956304..957170+

>NO01G03610.1 ID=NO01G03610.1|Name=NO01G03610.1|organism=Nannochloropsis oceanica|type=CDS|length=498bp|location=Sequence derived from alignment at chr1:956304..957170+ (Nannochloropsis oceanica)
ATGTCCCTCTCTTCACGTGATTACTTTTGTGTATCTTTTTCTGTCGTCTT
CTCTTCTGCTGGAAATGCCCTACTCACCCTGGACCATCTGATCCACCCCC
CCAAAAAAATCTTGTGTGCCTTAAGTTTGGCGCACGTATGTATAGAAATC
TCTAATCGCTCGGCCACCGGAGACCAGAATCTAAATGGAGCCGTCCCTCT
TTTTCCTACCTTTCTTCACTTTTTTGTCTTCAGTATGTTATTCTTACTAC
CTAAGGAGAAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAAGAGGAGGAGGAGGA
GGAAGAGGAGGAGGAGGAGGGGCAGGAAAAGGAGGAGGAGGAGGAGGAGG
AAGAGGAGGAAGAGGAGGAAGAGGAGGAAGAGGAGGAAGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAAGGCCTTCCAGTTTGCATTCTCTGA
back to top
Synonyms
Publications