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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:950880..953670 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G03590.1 vs.
Match: EWM29276.1 (gc-rich sequence dna-binding factor 1 [Nannochloropsis gaditana]) HSP 1 Score: 498.0 bits (1281), Expect = 4.900e-137 Identity = 348/707 (49.22%), Postives = 447/707 (63.22%), Query Frame = 0
Query: 54 SSKKPAAALLSFDDDDDEMEDG--GILQALKSKKKKNKALSSSKKSLRKALEQHLDERAAEAGIGAG--VGGGSGEGGGGEYSKEKLAELKKGQLFQVSTKAARETERSTRVTFELPEGVVEEGEEQEDETEVEQGGVLDKAEIDRLKKEKLKKQALRARHVPGEEEEEEEGFIPLDGSRRSVPMEGKNNEEEKGAAALAAVAGPVDPAIDDDWESEMIRRGARNSKGGGGGGGGGGGGGGGGGGGGGGGGGGGGEGNGGYLSSSLSRLALPSSFFPGSSPRFKTVAAVLTDLKSTKVRVEDAHSRNERFCEQSRNELQGINEGLGKMQAEFEETARRFQYFQDVREYLSSLCGCLREKKGMIEELEEAMAQVRKGGRDRRIAVRVEDQEDALEEVLE---KEREGGRKGQMLLSLQGYMPTVV------------------------------KTTRRRKHRRKRQELALRKLIGNSSSSNTGDTTEAEATLSGAEEDEREVELSHSRQAKLLEAAAIIFEDTADEFRSLDPVATRFEEWKKKYPKDYATAYVPVALSQVFEPYVRMEMVRWNPL-------EGGRDGGGEQGGEALEGFAWFERLFAYGQGEGEGGSEGEGEREDADERLVPVMVEKVVVGKLQQILEDCYDPVSGKETQRAVAAVQGLLIYEPGKHALEMLLRAPLTRIEEAITQVCLPLLKME 717
+++ A+A LSF DD ++ EDG G L+ LKSKKK KA +S KKSL++ALE+HLDE+AA GI + GG S GGGGEYSKEKLAELKK Q FQVS KA+R TE RV FE+PE +GE+++ E + + A++++LKK K ++ L + + G EE + FI L+ S M KGAA DP ID DWESE+IRRG R +G G G G L++SLS +ALPS S FK+V VL D++S + R+E++H RN R E++R+E+ + +GL KMQ EF TA RF+YFQDVR +LSSLCGCLREK+ M+ ELE AMAQ+ + G +RR++ RV+DQEDALEE LE KE++ + G MLLSLQGY P VV K ++ R+ R +R LA ++ + GD EAEAT SGAEE + EVE +RQAKLLEAA +IFED ADEF++LD V RFE+WK+K+PKDY TAYVP+AL QV EPYVR+EMV WNPL +G GG + GG A+E F WFERLF YGQ + E GS + E ED D+RLVP +VEKV V +L+ +L +CYDP S +ETQRA++A+QGLLIYEPGKHALE LLRAP +R+E+AIT++CLPLL E
Sbjct: 26 TAQMKASAFLSFADDVEDDEDGNSGGLKTLKSKKKNKKAFAS-KKSLQRALEEHLDEKAAVDGIASANQAGGVSYSGGGGEYSKEKLAELKKVQNFQVSIKASRTTEAKARVAFEVPEDT--DGEKEDAEGVDTEDYDVHSAQLEQLKKGKRRRGMLGSGNGLGAEEGMD--FISLEASGEGGTMSWSG----KGAARRLDAISEADPRIDKDWESEVIRRGVRTGRGETSDGRSMALEGRGARDLS--------------LTASLSSMALPSKGLKDSE--FKSVETVLADMRSVQSRLEESHDRNSRTAEKTRSEVASVKDGLEKMQKEFGGTAARFEYFQDVRIFLSSLCGCLREKEAMVRELEAAMAQLWREGYERRMSRRVQDQEDALEEALETDGKEQQSSQAG-MLLSLQGYAPEVVIALKESLSKGAGVPGPAHHDLDEFGRDASGKMSKDRRRRERRGRLA--SVLERINDGTGGDKAEAEATFSGAEESDSEVETLRTRQAKLLEAAGVIFEDVADEFKALDAVVQRFEDWKRKFPKDYHTAYVPIALPQVLEPYVRVEMVTWNPLGPVRSMEDGDGAGGKDVGGAAIEAFPWFERLFEYGQFQ-EEGSAPKQEGEDPDDRLVPQLVEKVAVSRLEGLLNECYDPFSERETQRAISAIQGLLIYEPGKHALESLLRAPFSRLEKAITKLCLPLLGPE 703
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G03590.1 ID=NO01G03590.1|Name=NO01G03590.1|organism=Nannochloropsis oceanica|type=mRNA|length=2214bp ATGAGCTTTAAGACCAAAAAGTTCCGGAGCCGCACAACCGCAGTGTCGTC TTCAGAAGAAGATGAAGATGCAGAGGCACGACGGACGGCCGCAGCAGTGC CTAAAAGCAAGCCAAAGAAGAAGGAAGAAGCTGCGGCAGCTTCCTCTGCC CCTGTCCCCTCCTCCAAAAAGCCAGCCGCAGCCCTCCTTAGTTTTGACGA CGACGACGACGAGATGGAGGATGGCGGAATATTACAGGCTTTGAAAAGCA AAAAGAAGAAGAATAAGGCGCTGTCGTCTAGCAAGAAGTCCTTGCGGAAA GCGCTGGAGCAGCACTTAGATGAACGTGCAGCCGAGGCCGGTATTGGCGC TGGTGTTGGTGGTGGTAGTGGAGAAGGAGGAGGGGGCGAATACAGCAAAG AGAAGCTTGCGGAATTGAAGAAGGGACAGCTTTTCCAAGTGAGCACTAAA GCGGCAAGAGAGACGGAGAGGAGCACACGGGTGACGTTTGAGCTGCCAGA AGGAGTAGTGGAGGAGGGGGAGGAACAAGAGGACGAAACCGAAGTAGAGC AAGGAGGGGTACTGGACAAAGCGGAGATTGACCGGTTAAAGAAAGAGAAA TTGAAAAAGCAGGCATTGAGGGCGAGGCACGTGCCGGGCGAGGAGGAGGA GGAGGAGGAGGGCTTCATACCATTGGATGGGAGTCGGAGATCAGTGCCGA TGGAGGGGAAGAATAATGAGGAAGAGAAAGGAGCAGCAGCCTTAGCAGCA GTCGCTGGGCCCGTGGACCCAGCTATTGACGATGACTGGGAGAGCGAGAT GATCCGCCGGGGGGCGCGCAACAGCAAAGGAGGAGGAGGAGGAGGAGGAG GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA GGAGGAGGAGGAGAGGGGAATGGCGGGTACTTGTCGTCGTCGTTGAGCCG CTTAGCCCTGCCCTCCTCTTTTTTCCCCGGCAGCTCCCCTCGGTTCAAAA CTGTAGCCGCTGTGCTCACCGATCTGAAATCAACCAAAGTTCGAGTCGAA GACGCCCACAGCCGAAACGAGCGTTTCTGCGAACAATCCCGAAACGAGCT GCAGGGTATCAATGAGGGCCTTGGGAAGATGCAAGCAGAATTTGAGGAGA CAGCCAGGAGGTTTCAATATTTCCAGGACGTACGGGAGTACTTATCAAGT TTGTGTGGGTGCCTTAGGGAGAAAAAAGGAATGATCGAGGAGCTGGAGGA GGCCATGGCGCAGGTGAGGAAGGGGGGAAGGGATCGAAGGATAGCGGTGA GGGTGGAGGATCAAGAGGATGCCCTGGAGGAAGTTTTGGAGAAGGAGAGG GAGGGAGGGAGGAAGGGGCAGATGTTGCTGTCGTTGCAGGGATATATGCC GACGGTTGTGAAAACAACGAGACGGAGGAAGCATCGGAGGAAACGACAAG AGCTGGCCTTGCGGAAGCTCATCGGCAACAGCAGCAGCAGCAATACTGGT GATACAACGGAAGCAGAAGCGACTTTGAGTGGAGCTGAGGAGGATGAAAG AGAAGTCGAGCTCTCTCATTCACGGCAAGCAAAGCTTTTGGAGGCTGCTG CTATAATCTTTGAGGATACCGCGGACGAATTTCGGTCGTTGGATCCCGTG GCTACTCGATTTGAAGAATGGAAGAAGAAGTATCCGAAGGATTATGCGAC CGCATACGTGCCGGTTGCCTTGTCTCAAGTGTTCGAACCCTATGTAAGAA TGGAGATGGTCAGGTGGAATCCCTTAGAGGGAGGGAGGGACGGAGGGGGG GAGCAAGGGGGGGAGGCTTTGGAGGGGTTTGCGTGGTTTGAACGGTTGTT TGCGTATGGGCAGGGAGAGGGCGAGGGAGGTAGCGAAGGAGAGGGCGAGA GAGAAGATGCGGATGAGCGGTTAGTGCCTGTAATGGTGGAGAAGGTGGTG GTGGGTAAGTTGCAGCAAATATTGGAAGATTGTTATGATCCTGTGTCGGG GAAGGAGACGCAGAGAGCAGTGGCTGCGGTGCAGGGGTTGTTGATATATG AGCCGGGAAAACATGCGTTGGAAATGTTGCTGCGAGCGCCGTTGACAAGG ATTGAGGAAGCGATCACTCAGGTGTGTTTGCCGCTGTTGAAGATGGAGGG GGTTGTGGAGGAAAATGAGGAAAGGGGGGAGGGATGGATTACCAGCGACG ACAGTTGTTTGTAG back to topprotein sequence of NO01G03590.1 >NO01G03590.1-protein ID=NO01G03590.1-protein|Name=NO01G03590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=738bp MSFKTKKFRSRTTAVSSSEEDEDAEARRTAAAVPKSKPKKKEEAAAASSA PVPSSKKPAAALLSFDDDDDEMEDGGILQALKSKKKKNKALSSSKKSLRK ALEQHLDERAAEAGIGAGVGGGSGEGGGGEYSKEKLAELKKGQLFQVSTK AARETERSTRVTFELPEGVVEEGEEQEDETEVEQGGVLDKAEIDRLKKEK LKKQALRARHVPGEEEEEEEGFIPLDGSRRSVPMEGKNNEEEKGAAALAA VAGPVDPAIDDDWESEMIRRGARNSKGGGGGGGGGGGGGGGGGGGGGGGG GGGGEGNGGYLSSSLSRLALPSSFFPGSSPRFKTVAAVLTDLKSTKVRVE DAHSRNERFCEQSRNELQGINEGLGKMQAEFEETARRFQYFQDVREYLSS LCGCLREKKGMIEELEEAMAQVRKGGRDRRIAVRVEDQEDALEEVLEKER EGGRKGQMLLSLQGYMPTVVKTTRRRKHRRKRQELALRKLIGNSSSSNTG DTTEAEATLSGAEEDEREVELSHSRQAKLLEAAAIIFEDTADEFRSLDPV ATRFEEWKKKYPKDYATAYVPVALSQVFEPYVRMEMVRWNPLEGGRDGGG EQGGEALEGFAWFERLFAYGQGEGEGGSEGEGEREDADERLVPVMVEKVV VGKLQQILEDCYDPVSGKETQRAVAAVQGLLIYEPGKHALEMLLRAPLTR IEEAITQVCLPLLKMEGVVEENEERGEGWITSDDSCL* back to topmRNA from alignment at chr1:950880..953670- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G03590.1 ID=NO01G03590.1|Name=NO01G03590.1|organism=Nannochloropsis oceanica|type=mRNA|length=2791bp|location=Sequence derived from alignment at chr1:950880..953670- (Nannochloropsis oceanica) ATGAGCTTTAAGACCAAAAAGTTCCGGAGCCGCACAACCGCAGTGTCGTC
TTCAGAAGAAGATGAAGATGCAGAGGCACGACGGACGGCCGCAGCAGTGC
CTAAAAGCAAGCCAAAGAAGAAGGAAGAAGCTGCGGCAGCTTCCTCTGCC
CCTGTCCCCTCCTCCAAAAAGCCAGCCGCAGCCCTCCTTAGTTTTGACGA
CGACGACGACGAGATGGAGGATGGCGGAATATTACAGGCTTTGAAAAGCA
AAAAGAAGAAGAATAAGGCGCTGTCGTCTAGCAAGAAGTCCTTGCGGAAA
GCGCTGGAGCAGCACTTAGATGAACGTGCAGCCGAGGCCGGTATTGGCGC
TGGTGTTGGTGGTGGTAGTGGAGAAGGAGGAGGGGGCGAATACAGCAAAG
AGAAGCTTGCGGAATTGAAGAAGGGACAGCTTTTCCAAGTGAGCACTAAA
GCGGCAAGAGAGACGGAGAGGAGCACACGGGTGACGTTTGAGCTGCCAGA
AGGAGTAGTGGAGGAGGGGGAGGAACAAGAGGACGAAACCGAAGTAGAGC
AAGGAGGGGTACTGGACAAAGCGGAGATTGACCGGTTAAAGAAAGAGAAA
TTGAAAAAGCAGGCATTGAGGGCGAGGCACGTGCCGGGCGAGGAGGAGGA
GGAGGAGGAGGGCTTCATACCATTGGATGGGAGTCGGAGATCAGTGCCGA
TGGAGGGGAAGAATAATGAGGTAAGAAAGAGAAATGGTGAGAGCAATAAG
GGAGAAATAGAGAACATGTGATGATTGATTACACAAGGAAAGTTGTGTTG
CATAGATAAGTGCACTGCGGGAAGAGGAGGAGGAGGATGAAGAAGGGTGT
CATTGGTATTGCTGCATGATTACAACATTTCATGAGATAGCGGACGAGTG
CGCATCACAATTGTTCAAATCGGCGTGCTTCGCATGGCGTCTAGAGATTT
CTGCCTGACAGCAAAAATGCAATGACACCCTTTCCAACTCGGTACTTCCT
CCCATCGTTTCCCATTTTCCCTTTCTTCTTATCCACACTCAACTTATCTA
TATGTACACATACGTTTACATACAAACAGGAAGAGAAAGGAGCAGCAGCC
TTAGCAGCAGTCGCTGGGCCCGTGGACCCAGCTATTGACGATGACTGGGA
GAGCGAGATGATCCGCCGGGGGGCGCGCAACAGCAAAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGAGGGGAATGGCGGGTACTTGTCGTCGTC
GTTGAGGTAGGCTAGCAGGAGGGTTGAAGGAGATAAGACAAGAGGAGGGG
AGGGAGATAGGCGATGAGGCTCATGTTTTTTTATTCAATCGTTGACACGA
CCATACGCCTCCTCCTTCCTCCCTTACCACGCACCCTCCAGCCGCTTAGC
CCTGCCCTCCTCTTTTTTCCCCGGCAGCTCCCCTCGGTTCAAAACTGTAG
CCGCTGTGCTCACCGATCTGAAATCAACCAAAGTTCGAGTCGAAGACGCC
CACAGCCGAAACGAGCGTTTCTGCGAACAATCCCGAAACGAGCTGCAGGG
TATCAATGAGGGCCTTGGGAAGATGCAAGCAGAATTTGAGGAGACAGCCA
GGAGGTTTCAATATTTCCAGGACGTACGGGAGTACTTATCAAGTTTGTGT
GGGTGCCTTAGGGAGAAAAAAGGAATGATCGAGGAGCTGGAGGAGGCCAT
GGCGCAGGTGAGGAAGGGGGGAAGGGATCGAAGGATAGCGGTGAGGGTGG
AGGATCAAGAGGATGCCCTGGAGGAAGTTTTGGAGAAGGAGAGGGAGGGA
GGGAGGAAGGGGCAGATGTTGCTGTCGTTGCAGGGATATATGCCGACGGT
TGTGAAAACGTTGGCGGGAGGAGGAGATGGGGGGGGGAGAAGGGAGGACC
GCTGGACGATATTGGGAGGGACGTGAGCGGGGATTTGGACAGAACGAGAC
GGAGGAAGCATCGGAGGAAACGACAAGAGCTGGCCTTGCGGAAGCTCATC
GGCAACAGCAGCAGCAGCAATACTGGTGATACAACGGAAGCAGAAGCGAC
TTTGAGTGGAGCTGAGGAGGATGAAAGAGAAGTCGAGCTCTCTCATTCAC
GGCAAGCAAAGCTTTTGGAGGCTGCTGCTATAATCTTTGAGGATACCGCG
GACGAATTTCGGTCGTTGGATCCCGTGGCTACTCGATTTGAAGAATGGAA
GAAGAAGTATCCGAAGGATTATGCGACCGCATACGTGCCGGTTGCCTTGT
CTCAAGTGTTCGAACCCTATGTAAGAATGGAGATGGTCAGGTGGAATCCC
TTAGAGGGAGGGAGGGACGGAGGGGGGGAGCAAGGGGGGGAGGCTTTGGA
GGGGTTTGCGTGGTTTGAACGGTTGTTTGCGTATGGGCAGGGAGAGGGCG
AGGGAGGTAGCGAAGGAGAGGGCGAGAGAGAAGATGCGGATGAGCGGTTA
GTGCCTGTAATGGTGGAGAAGGTGGTGGTGGGTAAGTTGCAGCAAATATT
GGAAGATTGTTATGATCCTGTGTCGGGGAAGGAGACGCAGAGAGCAGTGG
CTGCGGTGCAGGGGTTGTTGATATATGAGCCGGGAAAACATGCGTTGGAA
ATGTTGCTGCGAGCGCCGTTGACAAGGATTGAGGAAGCGATCACTCAGGT
GTGTTTGCCGCTGTTGAAGATGGAGGGGGTTGTGGAGGAAAATGAGGAAA
GGGGGGAGGGATGGATTACCAGCGACGACAGTTGTTTGTAG back to topCoding sequence (CDS) from alignment at chr1:950880..953670- >NO01G03590.1 ID=NO01G03590.1|Name=NO01G03590.1|organism=Nannochloropsis oceanica|type=CDS|length=2214bp|location=Sequence derived from alignment at chr1:950880..953670- (Nannochloropsis oceanica) ATGAGCTTTAAGACCAAAAAGTTCCGGAGCCGCACAACCGCAGTGTCGTC TTCAGAAGAAGATGAAGATGCAGAGGCACGACGGACGGCCGCAGCAGTGC CTAAAAGCAAGCCAAAGAAGAAGGAAGAAGCTGCGGCAGCTTCCTCTGCC CCTGTCCCCTCCTCCAAAAAGCCAGCCGCAGCCCTCCTTAGTTTTGACGA CGACGACGACGAGATGGAGGATGGCGGAATATTACAGGCTTTGAAAAGCA AAAAGAAGAAGAATAAGGCGCTGTCGTCTAGCAAGAAGTCCTTGCGGAAA GCGCTGGAGCAGCACTTAGATGAACGTGCAGCCGAGGCCGGTATTGGCGC TGGTGTTGGTGGTGGTAGTGGAGAAGGAGGAGGGGGCGAATACAGCAAAG AGAAGCTTGCGGAATTGAAGAAGGGACAGCTTTTCCAAGTGAGCACTAAA GCGGCAAGAGAGACGGAGAGGAGCACACGGGTGACGTTTGAGCTGCCAGA AGGAGTAGTGGAGGAGGGGGAGGAACAAGAGGACGAAACCGAAGTAGAGC AAGGAGGGGTACTGGACAAAGCGGAGATTGACCGGTTAAAGAAAGAGAAA TTGAAAAAGCAGGCATTGAGGGCGAGGCACGTGCCGGGCGAGGAGGAGGA GGAGGAGGAGGGCTTCATACCATTGGATGGGAGTCGGAGATCAGTGCCGA TGGAGGGGAAGAATAATGAGGAAGAGAAAGGAGCAGCAGCCTTAGCAGCA GTCGCTGGGCCCGTGGACCCAGCTATTGACGATGACTGGGAGAGCGAGAT GATCCGCCGGGGGGCGCGCAACAGCAAAGGAGGAGGAGGAGGAGGAGGAG GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA GGAGGAGGAGGAGAGGGGAATGGCGGGTACTTGTCGTCGTCGTTGAGCCG CTTAGCCCTGCCCTCCTCTTTTTTCCCCGGCAGCTCCCCTCGGTTCAAAA CTGTAGCCGCTGTGCTCACCGATCTGAAATCAACCAAAGTTCGAGTCGAA GACGCCCACAGCCGAAACGAGCGTTTCTGCGAACAATCCCGAAACGAGCT GCAGGGTATCAATGAGGGCCTTGGGAAGATGCAAGCAGAATTTGAGGAGA CAGCCAGGAGGTTTCAATATTTCCAGGACGTACGGGAGTACTTATCAAGT TTGTGTGGGTGCCTTAGGGAGAAAAAAGGAATGATCGAGGAGCTGGAGGA GGCCATGGCGCAGGTGAGGAAGGGGGGAAGGGATCGAAGGATAGCGGTGA GGGTGGAGGATCAAGAGGATGCCCTGGAGGAAGTTTTGGAGAAGGAGAGG GAGGGAGGGAGGAAGGGGCAGATGTTGCTGTCGTTGCAGGGATATATGCC GACGGTTGTGAAAACAACGAGACGGAGGAAGCATCGGAGGAAACGACAAG AGCTGGCCTTGCGGAAGCTCATCGGCAACAGCAGCAGCAGCAATACTGGT GATACAACGGAAGCAGAAGCGACTTTGAGTGGAGCTGAGGAGGATGAAAG AGAAGTCGAGCTCTCTCATTCACGGCAAGCAAAGCTTTTGGAGGCTGCTG CTATAATCTTTGAGGATACCGCGGACGAATTTCGGTCGTTGGATCCCGTG GCTACTCGATTTGAAGAATGGAAGAAGAAGTATCCGAAGGATTATGCGAC CGCATACGTGCCGGTTGCCTTGTCTCAAGTGTTCGAACCCTATGTAAGAA TGGAGATGGTCAGGTGGAATCCCTTAGAGGGAGGGAGGGACGGAGGGGGG GAGCAAGGGGGGGAGGCTTTGGAGGGGTTTGCGTGGTTTGAACGGTTGTT TGCGTATGGGCAGGGAGAGGGCGAGGGAGGTAGCGAAGGAGAGGGCGAGA GAGAAGATGCGGATGAGCGGTTAGTGCCTGTAATGGTGGAGAAGGTGGTG GTGGGTAAGTTGCAGCAAATATTGGAAGATTGTTATGATCCTGTGTCGGG GAAGGAGACGCAGAGAGCAGTGGCTGCGGTGCAGGGGTTGTTGATATATG AGCCGGGAAAACATGCGTTGGAAATGTTGCTGCGAGCGCCGTTGACAAGG ATTGAGGAAGCGATCACTCAGGTGTGTTTGCCGCTGTTGAAGATGGAGGG GGTTGTGGAGGAAAATGAGGAAAGGGGGGAGGGATGGATTACCAGCGACG ACAGTTGTTTGTAG back to top
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