NO01G03520.1, NO01G03520.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO01G03520.1
Unique Name	NO01G03520.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1764
Alignment location	chr1:918280..920430 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr1	genome	chr1:918280..920430 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO01G03520.1 vs.
Match: EWM29278.1 (aspartyl glutamyl-trna amidotransferase subunit b [Nannochloropsis gaditana])

HSP 1 Score: 696.4 bits (1796), Expect = 7.400e-197
Identity = 352/431 (81.67%), Postives = 384/431 (89.10%), Query Frame = 0

Query:  153 LALQCEIAAEVRYDRKNYFYPDTPKNYQITQYTHPLGGKGLLELPSGKMVAITRLHIEEDSAKMVHQGSDSLAGSTHSLVDFNRAGIPLAEIVSEPDMRSGAEAAEYGRELQKVLRYVGVSDGNMAEGSMRLDVNVSIRPKGEKALRAKVEVKNVNSFKSVQQAVDFEVLRQAKAYDAAEPVRQETRMWDEKELSTKLMRVKEGESDYRYFPEPDVPPLTLPPALVAAWKSELQELPAKKRARYQDSAGFGLDAETTKALTEDLNVAQFYEKAVEVHKADAKEAAKWLIGDIFGHLNGNKGKVKDFGKIKLTPAGLAELVGLIAEGKITGKIAKELLPELLDEWVGEEGKEGEGEAGAVLALVKERGMEAITDPAAIALLVEKVMQANPGKVADYRAGKTKMLGFFVGMVLKESGSRADPEVAQRLTEAAL 584
            +ALQCEIA EVRYDRKNYFYPDTPKNYQITQYTHPLG  G LELPSG+ V+ITRLH+EEDSAKMVHQGSDSLAGSTHSLVDFNRAGIPLAEIVSEPDMRSGAEAAEYGRELQK+LRYVG SDGNMAEGSMRLD+NVSIRP+GE+ LR KVEVKNVNSFKSVQQAVDFEV+RQA+AYDA E VRQETRMWDEKEL++KLMRVKEGESDYRYFPEPDVPPL L  ++V AW++ LQELPA KRARYQD AG  LDAETTK LT+DL VA+F+E AVE H A+ KEAAKWL+GDI GHLNGNKG+VK+FGKIKLTPAGLAELVGLI +GKITGKIAKELLPELLDEW G       GE GAVL LV+ RG+EAITDPA IA LV+KV++ANP KV D+R GKTK+LGFFVGMVLKESGSRA+PEV Q LT  AL
Sbjct:    1 MALQCEIAHEVRYDRKNYFYPDTPKNYQITQYTHPLGAGGCLELPSGRRVSITRLHVEEDSAKMVHQGSDSLAGSTHSLVDFNRAGIPLAEIVSEPDMRSGAEAAEYGRELQKILRYVGASDGNMAEGSMRLDINVSIRPRGEEGLRPKVEVKNVNSFKSVQQAVDFEVVRQARAYDAGEAVRQETRMWDEKELASKLMRVKEGESDYRYFPEPDVPPLALASSVVQAWRATLQELPAAKRARYQDPAGLNLDAETTKFLTDDLAVARFFEAAVEQHGAEPKEAAKWLVGDIAGHLNGNKGRVKEFGKIKLTPAGLAELVGLIGQGKITGKIAKELLPELLDEWEG-------GEEGAVLDLVQARGLEAITDPAVIAALVQKVLEANPEKVEDFRGGKTKLLGFFVGMVLKESGSRANPEVVQSLTVEAL 424

The following BLAST results are available for this feature:

BLAST of NO01G03520.1 vs.

BLAST of NO01G03520.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM29278.1	7.400e-197	81.67	aspartyl glutamyl-trna amidotransferase subunit b ...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO01G03520	NO01G03520	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO01G03520.1	NO01G03520.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO01G03520.1.cds1	NO01G03520.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G03520.1.cds2	NO01G03520.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G03520.1.cds3	NO01G03520.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr1:918280..920430-
coding sequence from alignment at chr1:918280..920430-

mRNA sequence

>NO01G03520.1 ID=NO01G03520.1|Name=NO01G03520.1|organism=Nannochloropsis oceanica|type=mRNA|length=1764bp
ATGGACACGAGCTGCCCCCCTCAAAGAAAAAGGCCTCGGCCGGCGCAGCC
TCTCCTCTGCACTTCACTCCGGCGCCTCGTGTTTGTTGCTGCCGCGGCTG
TGGCCGCCACTGCGGCCACGACAGCACACGCTTTCGTCGTGCCAAGCAGC
AGAGGCATTAATGGTGCCGCCATTTGGCGTGGGCGCACGGTGTACATGGG
CAAGGGCAGTGGTGGGGGCGGAGGAAGCAAGAAAAAGGGGTCCGCGCTGC
TGCAAGAGGTCCTCGAACGCTACGAAGCTGTCGTCGGCATCGAAGTTCAT
GCGCAGCTCCTCTCGGACACCAAAGCCTACTGCAGTTGCTCCACTCATTA
CAATCCCAACGTGCCCAACGCCAACATCTGCCCAGTCTGCACGGGCGAGC
CCGGCACGTTGCCGGTGCCCAACGCCCGTGTAGTCGAATTAGCCAGCAAG
GCCGCTCTGGCCCTTCAATGCGAAATAGCTGCAGAAGTCCGTTATGACCG
CAAAAATTATTTCTACCCCGATACGCCCAAAAACTACCAAATCACACAAT
ACACTCACCCACTGGGTGGGAAAGGTTTGCTGGAGCTCCCAAGTGGGAAA
ATGGTGGCCATCACCCGTTTACACATTGAAGAAGACTCGGCAAAGATGGT
CCATCAAGGGTCGGACTCCTTGGCGGGCTCGACACATTCCCTTGTCGATT
TTAATAGGGCCGGGATTCCTCTAGCGGAGATCGTGTCTGAGCCAGACATG
CGTTCAGGGGCGGAAGCAGCCGAGTATGGGAGGGAGTTGCAGAAGGTCCT
GCGATACGTAGGAGTAAGTGATGGGAACATGGCTGAGGGCTCGATGCGCC
TTGACGTGAATGTGTCGATTCGACCCAAGGGGGAAAAGGCCCTGAGGGCT
AAGGTGGAGGTGAAGAATGTGAACTCGTTCAAGTCCGTGCAGCAAGCGGT
GGACTTCGAAGTGTTGCGGCAGGCCAAAGCCTACGATGCTGCAGAGCCCG
TGAGGCAGGAAACGCGCATGTGGGACGAGAAAGAGCTATCGACCAAGCTC
ATGCGAGTTAAAGAAGGCGAATCCGACTATCGCTACTTTCCCGAACCGGA
CGTCCCCCCTCTCACCCTCCCCCCCGCCCTCGTCGCGGCCTGGAAGAGCG
AATTGCAGGAGCTGCCGGCGAAGAAGCGTGCGCGGTACCAGGATTCAGCG
GGTTTTGGGTTGGATGCAGAAACGACCAAGGCGTTAACGGAAGATTTGAA
CGTGGCGCAATTTTACGAAAAAGCCGTTGAGGTCCACAAGGCAGACGCCA
AGGAAGCAGCCAAATGGTTGATAGGTGATATTTTCGGGCACTTGAATGGA
AATAAAGGGAAGGTTAAGGACTTTGGCAAGATTAAGTTGACCCCTGCGGG
CCTGGCAGAGCTGGTCGGGCTGATCGCTGAAGGGAAGATTACCGGGAAGA
TAGCTAAGGAGCTCCTGCCGGAGTTGTTGGATGAGTGGGTTGGGGAGGAA
GGAAAAGAGGGGGAGGGGGAGGCAGGGGCGGTGTTGGCCTTGGTGAAGGA
GAGGGGGATGGAGGCCATTACGGACCCAGCGGCGATTGCGCTGTTGGTTG
AAAAGGTGATGCAGGCGAATCCAGGGAAGGTCGCTGATTATAGGGCCGGG
AAGACCAAGATGCTAGGTTTTTTTGTGGGGATGGTGTTGAAGGAGAGTGG
GAGTAGAGCTGATCCGGAGGTGGCACAGAGGTTGACGGAAGCAGCGTTGA
AGGACGGGATATAG

protein sequence of NO01G03520.1

>NO01G03520.1-protein ID=NO01G03520.1-protein|Name=NO01G03520.1|organism=Nannochloropsis oceanica|type=polypeptide|length=588bp
MDTSCPPQRKRPRPAQPLLCTSLRRLVFVAAAAVAATAATTAHAFVVPSS
RGINGAAIWRGRTVYMGKGSGGGGGSKKKGSALLQEVLERYEAVVGIEVH
AQLLSDTKAYCSCSTHYNPNVPNANICPVCTGEPGTLPVPNARVVELASK
AALALQCEIAAEVRYDRKNYFYPDTPKNYQITQYTHPLGGKGLLELPSGK
MVAITRLHIEEDSAKMVHQGSDSLAGSTHSLVDFNRAGIPLAEIVSEPDM
RSGAEAAEYGRELQKVLRYVGVSDGNMAEGSMRLDVNVSIRPKGEKALRA
KVEVKNVNSFKSVQQAVDFEVLRQAKAYDAAEPVRQETRMWDEKELSTKL
MRVKEGESDYRYFPEPDVPPLTLPPALVAAWKSELQELPAKKRARYQDSA
GFGLDAETTKALTEDLNVAQFYEKAVEVHKADAKEAAKWLIGDIFGHLNG
NKGKVKDFGKIKLTPAGLAELVGLIAEGKITGKIAKELLPELLDEWVGEE
GKEGEGEAGAVLALVKERGMEAITDPAAIALLVEKVMQANPGKVADYRAG
KTKMLGFFVGMVLKESGSRADPEVAQRLTEAALKDGI*

mRNA from alignment at chr1:918280..920430-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO01G03520.1 ID=NO01G03520.1|Name=NO01G03520.1|organism=Nannochloropsis oceanica|type=mRNA|length=2151bp|location=Sequence derived from alignment at chr1:918280..920430- (Nannochloropsis oceanica)
ATGGACACGAGCTGCCCCCCTCAAAGAAAAAGGCCTCGGCCGGCGCAGCC
TCTCCTCTGCACTTCACTCCGGCGCCTCGTGTTTGTTGCTGCCGCGGCTG
TGGCCGCCACTGCGGCCACGACAGCACACGCTTTCGTCGTGCCAAGCAGC
AGAGGCATTAATGGTGCCGCCATTTGGCGTGGGCGCACGGTGTACATGGG
CAAGGGCAGTGGTGGGGGCGGAGGAAGCAAGAAAAAGGGGTCCGCGCTGC
TGCAAGAGGTGCGTAGCACGCGCGTGCGTGTGTGAGTGTGTGTTTGAGGG
CACCTAGCATGTGCTCCTTCTCCCCCTCTCTATTTCTTTCCTCGAAAACA
ACGTTGATAGTGCAGCACTGTCTGCCTCCGCGTTCGTGTGAGTGAGTGAC
CAACCCCTTACTGGAACTCACAACCTCCTCCCCCTCCCTCCATCCCTCTT
CCCGCCATACCCTCTCACCAGGTCCTCGAACGCTACGAAGCTGTCGTCGG
CATCGAAGTTCATGCGCAGCTCCTCTCGGACACCAAAGCCTACTGCAGTT
GCTCCACTCATTACAATCCCAACGTGCCCAACGCCAACATCTGCCCAGTC
TGCACGGGCGAGCCCGGCACGTTGCCGGTGCCCAACGCCCGTGTAGTCGA
ATTAGCCAGCAAGGCCGCTCTGGCCCTTCAATGCGAAATAGCTGCAGAAG
TCCGTTATGACCGCAAAAATTATTTCTACCCCGATACGCCCAAAAACTAC
CAAATCACACAATACACTCACCCACTGGGTGGGAAAGGTTTGCTGGAGCT
CCCAAGTGGGAAAATGGTGGCCATCACCCGTTTACACATTGAAGAAGACT
CGGCAAAGATGGTCCATCAAGGGTCGGACTCCTTGGCGGGCTCGACACAT
TCCCTTGTCGATTTTAATAGGGCCGGGATTCCTCTAGCGGAGATCGTGTC
TGAGCCAGACATGCGTTCAGGGGCGGAAGCAGCCGAGTATGGGAGGGAGT
TGCAGAAGGTCCTGCGATACGTAGGAGTAAGTGATGGGAACATGGCTGAG
GGCTCGATGCGCCTTGACGTGAATGTGTCGATTCGACCCAAGGGGGAAAA
GGCCCTGAGGGCTAAGGTGGAGGTGAAGAATGTGAACTCGTTCAAGTCCG
TGCAGCAAGCGGTGGACTTCGAAGTGTTGCGGCAGGCCAAAGCCTACGAT
GCTGCAGAGCCCGTGAGGCAGGAAACGCGCATGTGGGACGAGAAAGAGCT
ATCGACCAAGCTCATGCGAGTTAAAGAAGGCGAATCCGACTATCGCTACT
TTCCCGAACCGGACGTCCCCCCTCTCACCCTCCCCCCCGCCCTCGTCGCG
GCCTGGAAGAGCGAATTGCAGGAGCTGCCGGCGAAGAAGCGTGCGCGGTA
CCAGGATTCAGCGGGTTTTGGGTTGGATGCAGGTGCGAAGGGGAAGAAGG
GAGAAAGGGAGGGAGGGAGGGACGGAGAAAGGAAGGGAAGATGGATGGGT
GGAAAGGCCGTCGAAAGGAAATTTCATCATCGTTTTATTTTTTTGTCGTA
GTCACTCAGTTACTCCCTCCTTCCCTCCCTCTCGCCCACTATTCCGGTTC
TCACAGAAACGACCAAGGCGTTAACGGAAGATTTGAACGTGGCGCAATTT
TACGAAAAAGCCGTTGAGGTCCACAAGGCAGACGCCAAGGAAGCAGCCAA
ATGGTTGATAGGTGATATTTTCGGGCACTTGAATGGAAATAAAGGGAAGG
TTAAGGACTTTGGCAAGATTAAGTTGACCCCTGCGGGCCTGGCAGAGCTG
GTCGGGCTGATCGCTGAAGGGAAGATTACCGGGAAGATAGCTAAGGAGCT
CCTGCCGGAGTTGTTGGATGAGTGGGTTGGGGAGGAAGGAAAAGAGGGGG
AGGGGGAGGCAGGGGCGGTGTTGGCCTTGGTGAAGGAGAGGGGGATGGAG
GCCATTACGGACCCAGCGGCGATTGCGCTGTTGGTTGAAAAGGTGATGCA
GGCGAATCCAGGGAAGGTCGCTGATTATAGGGCCGGGAAGACCAAGATGC
TAGGTTTTTTTGTGGGGATGGTGTTGAAGGAGAGTGGGAGTAGAGCTGAT
CCGGAGGTGGCACAGAGGTTGACGGAAGCAGCGTTGAAGGACGGGATATA
G

Coding sequence (CDS) from alignment at chr1:918280..920430-

>NO01G03520.1 ID=NO01G03520.1|Name=NO01G03520.1|organism=Nannochloropsis oceanica|type=CDS|length=1764bp|location=Sequence derived from alignment at chr1:918280..920430- (Nannochloropsis oceanica)
ATGGACACGAGCTGCCCCCCTCAAAGAAAAAGGCCTCGGCCGGCGCAGCC
TCTCCTCTGCACTTCACTCCGGCGCCTCGTGTTTGTTGCTGCCGCGGCTG
TGGCCGCCACTGCGGCCACGACAGCACACGCTTTCGTCGTGCCAAGCAGC
AGAGGCATTAATGGTGCCGCCATTTGGCGTGGGCGCACGGTGTACATGGG
CAAGGGCAGTGGTGGGGGCGGAGGAAGCAAGAAAAAGGGGTCCGCGCTGC
TGCAAGAGGTCCTCGAACGCTACGAAGCTGTCGTCGGCATCGAAGTTCAT
GCGCAGCTCCTCTCGGACACCAAAGCCTACTGCAGTTGCTCCACTCATTA
CAATCCCAACGTGCCCAACGCCAACATCTGCCCAGTCTGCACGGGCGAGC
CCGGCACGTTGCCGGTGCCCAACGCCCGTGTAGTCGAATTAGCCAGCAAG
GCCGCTCTGGCCCTTCAATGCGAAATAGCTGCAGAAGTCCGTTATGACCG
CAAAAATTATTTCTACCCCGATACGCCCAAAAACTACCAAATCACACAAT
ACACTCACCCACTGGGTGGGAAAGGTTTGCTGGAGCTCCCAAGTGGGAAA
ATGGTGGCCATCACCCGTTTACACATTGAAGAAGACTCGGCAAAGATGGT
CCATCAAGGGTCGGACTCCTTGGCGGGCTCGACACATTCCCTTGTCGATT
TTAATAGGGCCGGGATTCCTCTAGCGGAGATCGTGTCTGAGCCAGACATG
CGTTCAGGGGCGGAAGCAGCCGAGTATGGGAGGGAGTTGCAGAAGGTCCT
GCGATACGTAGGAGTAAGTGATGGGAACATGGCTGAGGGCTCGATGCGCC
TTGACGTGAATGTGTCGATTCGACCCAAGGGGGAAAAGGCCCTGAGGGCT
AAGGTGGAGGTGAAGAATGTGAACTCGTTCAAGTCCGTGCAGCAAGCGGT
GGACTTCGAAGTGTTGCGGCAGGCCAAAGCCTACGATGCTGCAGAGCCCG
TGAGGCAGGAAACGCGCATGTGGGACGAGAAAGAGCTATCGACCAAGCTC
ATGCGAGTTAAAGAAGGCGAATCCGACTATCGCTACTTTCCCGAACCGGA
CGTCCCCCCTCTCACCCTCCCCCCCGCCCTCGTCGCGGCCTGGAAGAGCG
AATTGCAGGAGCTGCCGGCGAAGAAGCGTGCGCGGTACCAGGATTCAGCG
GGTTTTGGGTTGGATGCAGAAACGACCAAGGCGTTAACGGAAGATTTGAA
CGTGGCGCAATTTTACGAAAAAGCCGTTGAGGTCCACAAGGCAGACGCCA
AGGAAGCAGCCAAATGGTTGATAGGTGATATTTTCGGGCACTTGAATGGA
AATAAAGGGAAGGTTAAGGACTTTGGCAAGATTAAGTTGACCCCTGCGGG
CCTGGCAGAGCTGGTCGGGCTGATCGCTGAAGGGAAGATTACCGGGAAGA
TAGCTAAGGAGCTCCTGCCGGAGTTGTTGGATGAGTGGGTTGGGGAGGAA
GGAAAAGAGGGGGAGGGGGAGGCAGGGGCGGTGTTGGCCTTGGTGAAGGA
GAGGGGGATGGAGGCCATTACGGACCCAGCGGCGATTGCGCTGTTGGTTG
AAAAGGTGATGCAGGCGAATCCAGGGAAGGTCGCTGATTATAGGGCCGGG
AAGACCAAGATGCTAGGTTTTTTTGTGGGGATGGTGTTGAAGGAGAGTGG
GAGTAGAGCTGATCCGGAGGTGGCACAGAGGTTGACGGAAGCAGCGTTGA
AGGACGGGATATAG

Synonyms

Publications