NO01G03380.2, NO01G03380.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G03380.2
Unique NameNO01G03380.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length5195
Alignment locationchr1:881746..887072 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:881746..887072 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO01G03380.2 vs.
Match: EWM29298.1 (rrna methylase family [Nannochloropsis gaditana])

HSP 1 Score: 860.5 bits (2222), Expect = 7.000e-246
Identity = 465/819 (56.78%), Postives = 595/819 (72.65%), Query Frame = 0
Query:  569 RAVAVLRSVLEALLLQSSTRLFGEVKLDWAARLMSSLVKAAASLGLRRGKRDFFLSVALENVWRCLVLLYKIQRQGGLVKPTDNPLPVDMAFLFSALEMSSRKSVPDILCCISCQLPFHLGISDSNGTEQE----RQTRLDNVVTLVLGCIEECNYRQSVMQLAIEMVLSPAILADPTLCRGTDTPVRRFFHRLVDLGTVKRAYILLNATARLTSIWRTEPAAAALAGEFVEEIAQLLVLRELEEDVYQQVNEDERD---SERDSETDVIREEIREPQEEHSVAVLRILVLGCLCDLFRPPDDGGKAKQGEFLTPLLTRLFEIAAAVDLRRAQILTSPDYSCKLRAWQAICVLVPFVRAEDASLVQDSVYAAMRVVAVPSIRFYQDTVLALVCQKFPDVAIPFLVTALTDLQVPPLTSGSFISAAGLACLTKNTAFPGGELPQDYVAPLLQAILPWISGQHAITRIVAQLLSFYLLSRLPTGDLDAVKAVESGQSGKGGVSNSRISAGSIDATFLSQTLNFLKNHREIASLRRKAMLRFQETSVPACCTVSHLLAQHSNEQG-GVRDLVPEHVEEVLREAMTSLYRDLEAEHHMTYTSIAPVVRGENLFELKQDASSARALLLEGNAEAEAADCYSLQKKIVVSDVLTSLLPAPPTDKSQNTRGVLLQELVVCASLLERVPNVAGLARTCEIFAASKLIIPDLRMLKDPLFDQISSSAWKWIQMEEIHEGHTRAFLRRYKQEGYTVVGLEQTDDSSCLSRVALPRKMLLLLGREKEGIPVPLLQELDLVVQIPQLGLVRSLNVHVSASLIVWEYFKQHR 1380
            R VA+L+S+L AL     + +F  V+  WA  L+  L  A A L  R   R  FLS+ L+++WR L LL+++             +PV+M F F+A+E +SR S+PDIL  ++  L  +L  S +  T Q+    RQ RL  +V LVL C+EECNYR+ V QLAI+MV SP +L DP  CRG D  VR F +RL++LGTVKR Y++L+ATARL SIW+++  A +LAGEF +E+ +LLVLREL +DVYQQ  ++ R+   S  +  T V +++ RE Q      +LRIL+LGC+CDLFR  ++  +A Q EFL  L+ RLFE AAAVDLRRAQIL+SPDYS KLRAWQAICVL+PFV  E    +Q+ +  AMR VAVPS+RFYQ+ VL+ +CQKFPDVAIPFL+  L+DL VPPLTS S + +AGLACLT +  F GG+LPQ+YV PLLQ ILPW+SGQHA TRIVAQLLSFYLLSRL  GD+D              +  +      I+  +LS TL FL++HRE+A LR+K ML F++ SV   CT+ +LL Q    +G  V DLVP H+E  LR+AMT LYR+LEA+H MTYTS+AP+ +GENLF++ Q++ +   ++      A +++C S QKKI VSDV ++LLP+ P  +S N RGV LQE V+CASLLERVPN+AGLARTCEIFA SKL+IPD+R+L+DPLF++ISSSA +WI++EE+HEG TRA+++R KQEGYT+VGLEQTDDS CLS V LPRKM+LL+GREKEGIPVPLLQELDLVVQIPQLGLVRSLNVHVSASLIVWE++KQHR
Sbjct:    2 RTVALLQSILGALSWYPGSDIFILVRERWADALLRDLFAATAKLTSRADGRGLFLSLVLDDIWRSLALLHRMHSSHSNNDSYGASIPVEMDFFFAAIETASRNSLPDILYSMNHYLLSYLFPSQNTLTAQDIVQIRQKRLKTIVMLVLRCVEECNYRRRVAQLAIDMVFSPLVLKDPAFCRGVDNHVRYFLNRLINLGTVKRGYLVLDATARLVSIWKSDFQAVSLAGEFSKELVELLVLRELADDVYQQSIDEGREFDFSAGNHTTGVTKQQKREGQ---PCILLRILLLGCICDLFR-MNNTSEAGQKEFLMSLMIRLFETAAAVDLRRAQILSSPDYSRKLRAWQAICVLIPFVDKEHVEAIQELIVTAMRTVAVPSVRFYQEIVLSYLCQKFPDVAIPFLMRNLSDLNVPPLTSASLVLSAGLACLTTSPVFVGGKLPQEYVGPLLQVILPWLSGQHANTRIVAQLLSFYLLSRLLGGDMDI------NTEALANIGGNLPPGEKINYMYLSGTLRFLRDHREMAGLRQKTMLHFRKLSVAETCTLRYLLEQQRIMEGDSVSDLVPVHIETALRDAMTLLYRELEAKHFMTYTSMAPLTKGENLFDIDQNSITFERVVSADTGGAVSSNCSSFQKKISVSDVFSALLPSQPLIQSTNARGVQLQEFVMCASLLERVPNLAGLARTCEIFAVSKLVIPDMRLLRDPLFEKISSSAGRWIKIEEVHEGRTRAYIQRCKQEGYTIVGLEQTDDSFCLSGVVLPRKMVLLVGREKEGIPVPLLQELDLVVQIPQLGLVRSLNVHVSASLIVWEHYKQHR 810          
The following BLAST results are available for this feature:
BLAST of NO01G03380.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29298.17.000e-24656.78rrna methylase family [Nannochloropsis gaditana][more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G03380NO01G03380Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G03380.2NO01G03380.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G03380.2.cds1NO01G03380.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03380.2.cds2NO01G03380.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G03380.2 ID=NO01G03380.2|Name=NO01G03380.2|organism=Nannochloropsis oceanica|type=mRNA|length=5195bp
GCATGGCGCTTGGCCAGCAGCAGATGGAGAAGGGTGATCAGATGCTTGCG
CTGGCAGAGGGGGTGGCCAAGGCTGGGGAGGCTTCTACCTTGGGACTCAA
GGAGCGCCTCGCCCTTCTCAATGCTCTCAGCAGCAGTATCACCACCAACC
GTCGCACCATGCGCCTCATCCCGGAGGATCTAGACCTGGGAGAGGGCTCC
GCGGATGCTCTTTTGCTTCATGTCAACGCAGTGGAGCTCTTGCTGGCAGC
TGGGCGAGAAGAGGTCGGCAGCAATGACGAAGACGCGTGGGGGACCGTGG
TGTCATTGTGGATCGAGAGGGTGGGACTTCCCATTCTTACCTCTCGGCGT
CTGGACCTTGGTCCCGCACAGAATGAAATAGGCATGCGTATAGGTCGTCT
ATTGGCATCGACAAGCAGTGAAGCGATACAACAAGCCATGCAGGCAGCAA
CATTGCATGTGCTTGACGATATGAGCGTGCGCGTGTCCTGTCCACGGGCA
GACAAAGACGGCGGGGAGCTGCTGGAGGTGATTAGTGCTCAAGCTGGATG
GGTTGCTTCTTTCTTAAATCAAGGTGCACAAGATGTTGATACATTCCCAC
TTGCTGTACTCGAGCGCACACTTGTAAACTTGGAAAGATGTCCGGCGCCT
GCGCTACGGTCGATTATTGTGAGGGTCGTGTCGCCTGCCTTGGCGAGTAT
GCTGCAAGGCAAGGAAAATAATGCGGCAGCACACGTGATAAATTCTAAGG
TCTGGGGATTTGTACGACGACTTGATGTGGAAGGGGGCTTGGAAGAGCAG
GTGAGTAGGCAGAAAGAGTAGGGGGGAATGCGCATTGCGGTACTTTACTC
TCCCCTTTACGCTTGCATCACTAGCTCTACATCGCGTCCATAACCGACAA
TTCTATGTGATTGCCTCTTTTTGTTTAATGTTAAGTAATTGTTTTTTCTT
TTCTTCTCTACACAGCGAGATGCCCTTGCGATGCTCTGCGTCTTACAAGA
AGTCCTTGTCCCTGCGCTCGGCCTCAATCGGTCTGACCCTACCTTCTGGA
CTATGCTTCGACGCGGACTCGCCAGCGACTGCAACGCGGTTCGTAAGCGT
GCCTTGTACGTACTAAGCGCCCAGGTAGAGATGGCCAAAACTGTCGGTGC
TGTTTCTACCGGTGCTGGTGCCACGGCCCATTTTCCTGCTTCTGCTTCGT
CTCCTCTTAAGGTCAAGTTCCTCACCTGGTGGCGACGCTTTGTCCAAGTC
ATGGACACATTCAATACGGCTCTTGAAACACATCTCCTGAATCAAGCTCT
ACCTGTCTGTACGTCATTGCTGCGTGAGGCTTTTGCGTTCACCGGGAACG
AGGAAGAGGAAGGGCAGGATGGCATGCTCAACGGCAACGCGGCCTCTTTG
CTCCCTCTACCTTCGTTTGGATGGGCAGAGGCGCTTCTTGGCCGCGCAAT
AAGTGTGACGAATTTTTCCGTCCAGCGCACGTACTTGCTGTGGCTGATGA
GTGAGGAGGGTGTCGCTTGCGTCCCCTTGAGCAAGCTTGGTCCCCGCTTT
ATTATCACTAAAATTCTGCCGGCTTTCAAGGAAATGAGCAACTTGAAGGA
CGACAGGCCAAAGCTTGGACGCTTCCTGGCGCGGGCCATTGTTGCGCAAG
AAGAGGATAATGGAGCGAGGCGGGAGGTGCTTGTGGCGGTGTTTGAGTAT
TGCAAGGATGTTGTGCGAGGCGCCGTGGTACGGCAGACACTGCTCGGGTT
TATAGAGTTCCGCGACGTCTTCCAGCAGACATCCCCTTGTCTGCAAATCG
ATGATGTAGAGCTGGCTCGTCTCCTCGTCTGTGTCATGAACTCACAATAC
AACCAAGGGCTCAGTCAAATATTAGCTGGGCGGATGGTGGATTGCTTGGA
GGTCTTTGCCGATTGTCAATCCCTCATTGCTGCTGGGCCTCACGGCGCCG
CCGTCGTGCGTACCTTCCTCTTAGACCTTCCGCAGAAAGTTGCATTGGAC
AGCCACTATAACCGTCTAGTTGAGTGGTTGGGGGTGTCGACAGTTGCGGG
CGGGGCCACAGGATGGTGGGGCGAGAGCACTACATCGGCCATCGAAGCTT
TGATAAACGGTAGTGGTGGTCACGGCAGTGGCGAGTTGACCATGGCAGCT
TCAGGAGGCTCTGTCTGGTCGTCTATGGAAGGGGGCCAGTGCTTGGAAAA
TGTTAATCAGTCGAGCATGGCATGCTGTGCTTTGGCTTGCATGTACTTGC
CGGATCTTGAGTTGGCACACGCCCTTGCTTCAGCTCTGCGGGTCCTGGGC
CGCATTCACTCTCATCCCTACTTGACCCTGCGGTCGTGTCTGGCTTCCCT
CTGTTTGCTGCGGTCACTGGGTTCCCTTTTGCGACGAAAGCACCGTCCGT
GTTTGTACGAGATTCTGCGGCAACACACAGGGGAAGTGGCCGAGTTTCTT
GCTGCCAAGCTTCAGGAGAGCTGCTTGTGTACCCGGGCCGACCTGTACGA
TAGTGGCAATTCAGGCGTATTTGGACTGTGCGTGCAGGCGTTTGGGACGG
TGATATGGCTGGCTGCGGATGTAGGGCAAGTTGCCGGTGCTATCCAGCGT
GTGCTGAAAACGTGTTCAAGCGTGCTTAATGCTGGCGTGGATGATGCAGC
GGCTGGTGATGCAGGGGAAATTCGTCAGCTGGGGCGTGCAGTAGCCGTGC
TGCGAAGCGTCCTGGAAGCCCTCCTGCTGCAATCCAGCACGAGACTTTTT
GGTGAAGTTAAATTGGACTGGGCTGCACGGCTTATGAGCAGCCTTGTCAA
AGCCGCTGCCAGCTTGGGCCTCCGACGAGGGAAGCGGGACTTTTTTTTGT
CCGTGGCACTCGAGAATGTATGGCGGTGCTTGGTTCTTCTTTACAAAATT
CAACGCCAGGGCGGTTTGGTGAAACCTACAGATAACCCTCTCCCCGTGGA
TATGGCATTTCTTTTTTCCGCATTGGAGATGTCAAGCCGCAAATCGGTGC
CCGATATTCTCTGCTGCATTAGCTGTCAACTTCCGTTTCACCTCGGCATA
TCCGACAGCAACGGCACGGAGCAGGAACGACAAACGCGTCTCGACAACGT
AGTCACGCTTGTGCTAGGCTGCATTGAAGAATGTAACTACAGACAAAGTG
TCATGCAACTTGCCATCGAGATGGTGCTTTCGCCGGCCATACTCGCAGAC
CCCACCCTCTGTCGAGGAACAGATACCCCGGTGCGGCGTTTCTTTCATCG
GCTTGTTGACCTCGGCACTGTCAAGCGGGCCTATATTCTTCTGAATGCCA
CGGCCAGGTTAACATCTATTTGGCGGACAGAACCGGCGGCTGCAGCACTT
GCTGGGGAATTCGTAGAGGAAATAGCGCAACTTTTGGTGCTTCGTGAGTT
GGAAGAAGATGTGTACCAGCAAGTGAATGAGGATGAGCGAGATTCCGAGC
GAGATTCCGAGACAGACGTCATCAGGGAGGAAATCAGAGAGCCCCAGGAA
GAACACTCTGTCGCAGTGCTTCGCATCTTGGTGCTTGGGTGTTTGTGCGA
TCTATTCCGACCACCAGATGATGGGGGAAAGGCCAAACAGGGCGAATTTT
TGACCCCCCTTCTCACTCGTTTGTTTGAAATAGCAGCTGCCGTAGATTTA
AGAAGGGCTCAAATTCTGACTTCCCCCGACTACTCGTGCAAGCTTCGGGC
GTGGCAAGCCATTTGCGTGCTTGTGCCGTTTGTGAGGGCTGAGGATGCAT
CGCTGGTACAGGACTCGGTATATGCAGCCATGCGTGTGGTGGCGGTACCC
TCCATCCGTTTTTACCAAGATACCGTTTTGGCGCTTGTCTGCCAAAAGTT
TCCCGACGTGGCGATTCCTTTCCTTGTGACGGCTTTGACCGACCTCCAAG
TCCCGCCATTAACCAGCGGCTCGTTCATTTCTGCGGCGGGTTTGGCTTGC
TTGACCAAAAATACTGCTTTCCCAGGTGGAGAGCTTCCACAAGACTACGT
TGCCCCCCTGCTCCAAGCCATCTTGCCGTGGATTTCAGGGCAACACGCAA
TTACGCGTATCGTCGCACAGCTCCTATCCTTTTATCTCTTGTCTCGGCTA
CCCACAGGAGATCTGGATGCGGTCAAAGCTGTGGAATCGGGTCAGAGCGG
GAAAGGCGGAGTCAGCAACAGTAGAATCTCTGCTGGCAGTATTGACGCGA
CTTTCCTGAGTCAAACTTTGAATTTCTTGAAAAACCACCGCGAGATAGCG
AGCTTGCGCCGCAAAGCTATGCTGCGCTTCCAGGAAACTTCAGTACCCGC
CTGCTGTACTGTATCACACCTTCTTGCCCAGCACTCGAATGAGCAAGGCG
GTGTGCGTGACCTGGTGCCGGAGCATGTAGAAGAGGTGCTGCGGGAAGCG
ATGACGTCTCTGTATCGAGACCTGGAGGCAGAACACCACATGACTTACAC
ATCCATAGCGCCCGTGGTCCGAGGAGAAAATCTTTTTGAGCTTAAGCAAG
ACGCAAGTAGTGCCCGAGCCTTGTTGCTAGAGGGGAATGCAGAGGCAGAG
GCGGCCGACTGTTATTCGCTACAAAAAAAGATTGTGGTCTCTGACGTGCT
GACTTCACTTCTCCCGGCTCCACCCACCGACAAATCCCAAAATACGCGAG
GGGTTCTGCTGCAAGAGCTCGTGGTGTGCGCGTCATTGCTGGAGCGGGTA
CCTAATGTAGCCGGCCTCGCCCGAACATGCGAGATCTTCGCCGCATCCAA
ACTTATTATTCCCGACTTGCGCATGCTCAAAGACCCGCTATTTGACCAAA
TTAGCAGCAGTGCGTGGAAATGGATTCAGATGGAGGAGATCCATGAAGGG
CACACTCGCGCCTTTCTTCGGCGCTACAAACAGGAGGGTTACACGGTGGT
GGGGCTCGAGCAAACAGACGACAGCTCGTGCCTCTCTAGGGTGGCTTTGC
CTCGCAAGATGCTCTTGCTTTTGGGCCGCGAGAAGGAGGGCATTCCCGTT
CCACTGCTTCAAGAGTTGGATTTGGTTGTGCAGATTCCTCAGCTGGGTCT
AGTGAGGAGTTTAAATGTGCACGTGAGCGCGTCTCTCATTGTATGGGAGT
ATTTTAAGCAGCATCGCAAAAGCTGCGGTAAGGACCAACAATGGTAGATT
AGAACTAATTGAAATCATCAAAGTACAATGCATGTATTGTCCTAG
back to top

protein sequence of NO01G03380.2

>NO01G03380.2-protein ID=NO01G03380.2-protein|Name=NO01G03380.2|organism=Nannochloropsis oceanica|type=polypeptide|length=1389bp
MLCVLQEVLVPALGLNRSDPTFWTMLRRGLASDCNAVRKRALYVLSAQVE
MAKTVGAVSTGAGATAHFPASASSPLKVKFLTWWRRFVQVMDTFNTALET
HLLNQALPVCTSLLREAFAFTGNEEEEGQDGMLNGNAASLLPLPSFGWAE
ALLGRAISVTNFSVQRTYLLWLMSEEGVACVPLSKLGPRFIITKILPAFK
EMSNLKDDRPKLGRFLARAIVAQEEDNGARREVLVAVFEYCKDVVRGAVV
RQTLLGFIEFRDVFQQTSPCLQIDDVELARLLVCVMNSQYNQGLSQILAG
RMVDCLEVFADCQSLIAAGPHGAAVVRTFLLDLPQKVALDSHYNRLVEWL
GVSTVAGGATGWWGESTTSAIEALINGSGGHGSGELTMAASGGSVWSSME
GGQCLENVNQSSMACCALACMYLPDLELAHALASALRVLGRIHSHPYLTL
RSCLASLCLLRSLGSLLRRKHRPCLYEILRQHTGEVAEFLAAKLQESCLC
TRADLYDSGNSGVFGLCVQAFGTVIWLAADVGQVAGAIQRVLKTCSSVLN
AGVDDAAAGDAGEIRQLGRAVAVLRSVLEALLLQSSTRLFGEVKLDWAAR
LMSSLVKAAASLGLRRGKRDFFLSVALENVWRCLVLLYKIQRQGGLVKPT
DNPLPVDMAFLFSALEMSSRKSVPDILCCISCQLPFHLGISDSNGTEQER
QTRLDNVVTLVLGCIEECNYRQSVMQLAIEMVLSPAILADPTLCRGTDTP
VRRFFHRLVDLGTVKRAYILLNATARLTSIWRTEPAAAALAGEFVEEIAQ
LLVLRELEEDVYQQVNEDERDSERDSETDVIREEIREPQEEHSVAVLRIL
VLGCLCDLFRPPDDGGKAKQGEFLTPLLTRLFEIAAAVDLRRAQILTSPD
YSCKLRAWQAICVLVPFVRAEDASLVQDSVYAAMRVVAVPSIRFYQDTVL
ALVCQKFPDVAIPFLVTALTDLQVPPLTSGSFISAAGLACLTKNTAFPGG
ELPQDYVAPLLQAILPWISGQHAITRIVAQLLSFYLLSRLPTGDLDAVKA
VESGQSGKGGVSNSRISAGSIDATFLSQTLNFLKNHREIASLRRKAMLRF
QETSVPACCTVSHLLAQHSNEQGGVRDLVPEHVEEVLREAMTSLYRDLEA
EHHMTYTSIAPVVRGENLFELKQDASSARALLLEGNAEAEAADCYSLQKK
IVVSDVLTSLLPAPPTDKSQNTRGVLLQELVVCASLLERVPNVAGLARTC
EIFAASKLIIPDLRMLKDPLFDQISSSAWKWIQMEEIHEGHTRAFLRRYK
QEGYTVVGLEQTDDSSCLSRVALPRKMLLLLGREKEGIPVPLLQELDLVV
QIPQLGLVRSLNVHVSASLIVWEYFKQHRKSCGKDQQW*
back to top

mRNA from alignment at chr1:881746..887072+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G03380.2 ID=NO01G03380.2|Name=NO01G03380.2|organism=Nannochloropsis oceanica|type=mRNA|length=5327bp|location=Sequence derived from alignment at chr1:881746..887072+ (Nannochloropsis oceanica)
GCATGGCGCTTGGCCAGCAGCAGATGGAGAAGGGTGATCAGATGCTTGCG CTGGCAGAGGGGGTGGCCAAGGCTGGGGAGGCTTCTACCTTGGGACTCAA GGAGCGCCTCGCCCTTCTCAATGCTCTCAGCAGCAGTATCACCACCAACC GTCGCACCATGCGCCTCATCCCGGAGGATCTAGACCTGGGAGAGGGCTCC GCGGATGCTCTTTTGCTTCATGTCAACGCAGTGGAGCTCTTGCTGGCAGC TGGGCGAGAAGAGGTCGGCAGCAATGACGAAGACGCGTGGGGGACCGTGG TGTCATTGTGGATCGAGAGGGTGGGACTTCCCATTCTTACCTCTCGGCGT CTGGACCTTGGTCCCGCACAGAATGAAATAGGCATGCGTATAGGTCGTCT ATTGGCATCGACAAGCAGTGAAGCGATACAACAAGCCATGCAGGCAGCAA CATTGCATGTGCTTGACGATATGAGCGTGCGCGTGTCCTGTCCACGGGCA GACAAAGACGGCGGGGAGCTGCTGGAGGTGATTAGTGCTCAAGCTGGATG GGTTGCTTCTTTCTTAAATCAAGGTGCACAAGATGTTGATACATTCCCAC TTGCTGTACTCGAGCGCACACTTGTAAACTTGGAAAGATGTCCGGCGCCT GCGCTACGGTCGATTATTGTGAGGGTCGTGTCGCCTGCCTTGGCGAGTAT GCTGCAAGGCAAGGAAAATAATGCGGCAGCACACGTGATAAATTCTAAGG TCTGGGGATTTGTACGACGACTTGATGTGGAAGGGGGCTTGGAAGAGCAG GTGAGTAGGCAGAAAGAGTAGGGGGGAATGCGCATTGCGGTACTTTACTC TCCCCTTTACGCTTGCATCACTAGCTCTACATCGCGTCCATAACCGACAA TTCTATGTGATTGCCTCTTTTTGTTTAATGTTAAGTAATTGTTTTTTCTT TTCTTCTCTACACAGCGAGATGCCCTTGCGATGCTCTGCGTCTTACAAGA AGTCCTTGTCCCTGCGCTCGGCCTCAATCGGTCTGACCCTACCTTCTGGA CTATGCTTCGACGCGGACTCGCCAGCGACTGCAACGCGGTTCGTAAGCGT GCCTTGTACGTACTAAGCGCCCAGGTAGAGATGGCCAAAACTGTCGGTGC TGTTTCTACCGGTGCTGGTGCCACGGCCCATTTTCCTGCTTCTGCTTCGT CTCCTCTTAAGGTCAAGTTCCTCACCTGGTGGCGACGCTTTGTCCAAGTC ATGGACACATTCAATACGGCTCTTGAAACACATCTCCTGAATCAAGCTCT ACCTGTCTGTACGTCATTGCTGCGTGAGGCTTTTGCGTTCACCGGGAACG AGGAAGAGGAAGGGCAGGATGGCATGCTCAACGGCAACGCGGCCTCTTTG CTCCCTCTACCTTCGTTTGGATGGGCAGAGGCGCTTCTTGGCCGCGCAAT AAGTGTGACGAATTTTTCCGTCCAGCGCACGTACTTGCTGTGGCTGATGA GTGAGGAGGGTGTCGCTTGCGTCCCCTTGAGCAAGCTTGGTCCCCGCTTT ATTATCACTAAAATTCTGCCGGCTTTCAAGGAAATGAGCAACTTGAAGGA CGACAGGCCAAAGCTTGGACGCTTCCTGGCGCGGGCCATTGTTGCGCAAG AAGAGGATAATGGAGCGAGGCGGGAGGTGCTTGTGGCGGTGTTTGAGTAT TGCAAGGATGTTGTGCGAGGCGCCGTGGTACGGCAGACACTGCTCGGGTT TATAGAGTTCCGCGACGTCTTCCAGCAGACATCCCCTTGTCTGCAAATCG ATGATGTAGAGCTGGCTCGTCTCCTCGTCTGTGTCATGAACTCACAATAC AACCAAGGGCTCAGTCAAATATTAGCTGGGCGGATGGTGGATTGCTTGGA GGTCTTTGCCGATTGTCAATCCCTCATTGCTGCTGGGCCTCACGGCGCCG CCGTCGTGCGTACCTTCCTCTTAGACCTTCCGCAGAAAGTTGCATTGGAC AGCCACTATAACCGTCTAGTTGAGTGGTTGGGGGTGTCGACAGTTGCGGG CGGGGCCACAGGATGGTGGGGCGAGAGCACTACATCGGCCATCGAAGCTT TGATAAACGGTAGTGGTGGTCACGGCAGTGGCGAGTTGACCATGGCAGCT TCAGGAGGCTCTGTCTGGTCGTCTATGGAAGGGGGCCAGTGCTTGGAAAA TGTTAATCAGTCGAGCATGGCATGCTGTGCTTTGGCTTGCATGTACTTGC CGGATCTTGAGTTGGCACACGCCCTTGCTTCAGCTCTGCGGGTCCTGGGC CGCATTCACTCTCATCCCTACTTGACCCTGCGGTCGTGTCTGGCTTCCCT CTGTTTGCTGCGGTCACTGGGTTCCCTTTTGCGACGAAAGCACCGTCCGT GTTTGTACGAGATTCTGCGGCAACACACAGGGGAAGTGGCCGAGTTTCTT GCTGCCAAGCTTCAGGAGAGCTGCTTGTGTACCCGGGCCGACCTGTACGA TAGTGGCAATTCAGGCGTATTTGGACTGTGCGTGCAGGCGTTTGGGACGG TGATATGGCTGGCTGCGGATGTAGGGTAAGTGATCAGGCTTCATATGCTT TTTTTTGGCCCTCTGACAGGGCATAATTATTCGTATCTCAGTTCATTTGC CTTCACGATTCGTGGTCTTCACTCCATCTTTCCTCCACCTTGTCAACCCT CCATCAGGCAAGTTGCCGGTGCTATCCAGCGTGTGCTGAAAACGTGTTCA AGCGTGCTTAATGCTGGCGTGGATGATGCAGCGGCTGGTGATGCAGGGGA AATTCGTCAGCTGGGGCGTGCAGTAGCCGTGCTGCGAAGCGTCCTGGAAG CCCTCCTGCTGCAATCCAGCACGAGACTTTTTGGTGAAGTTAAATTGGAC TGGGCTGCACGGCTTATGAGCAGCCTTGTCAAAGCCGCTGCCAGCTTGGG CCTCCGACGAGGGAAGCGGGACTTTTTTTTGTCCGTGGCACTCGAGAATG TATGGCGGTGCTTGGTTCTTCTTTACAAAATTCAACGCCAGGGCGGTTTG GTGAAACCTACAGATAACCCTCTCCCCGTGGATATGGCATTTCTTTTTTC CGCATTGGAGATGTCAAGCCGCAAATCGGTGCCCGATATTCTCTGCTGCA TTAGCTGTCAACTTCCGTTTCACCTCGGCATATCCGACAGCAACGGCACG GAGCAGGAACGACAAACGCGTCTCGACAACGTAGTCACGCTTGTGCTAGG CTGCATTGAAGAATGTAACTACAGACAAAGTGTCATGCAACTTGCCATCG AGATGGTGCTTTCGCCGGCCATACTCGCAGACCCCACCCTCTGTCGAGGA ACAGATACCCCGGTGCGGCGTTTCTTTCATCGGCTTGTTGACCTCGGCAC TGTCAAGCGGGCCTATATTCTTCTGAATGCCACGGCCAGGTTAACATCTA TTTGGCGGACAGAACCGGCGGCTGCAGCACTTGCTGGGGAATTCGTAGAG GAAATAGCGCAACTTTTGGTGCTTCGTGAGTTGGAAGAAGATGTGTACCA GCAAGTGAATGAGGATGAGCGAGATTCCGAGCGAGATTCCGAGACAGACG TCATCAGGGAGGAAATCAGAGAGCCCCAGGAAGAACACTCTGTCGCAGTG CTTCGCATCTTGGTGCTTGGGTGTTTGTGCGATCTATTCCGACCACCAGA TGATGGGGGAAAGGCCAAACAGGGCGAATTTTTGACCCCCCTTCTCACTC GTTTGTTTGAAATAGCAGCTGCCGTAGATTTAAGAAGGGCTCAAATTCTG ACTTCCCCCGACTACTCGTGCAAGCTTCGGGCGTGGCAAGCCATTTGCGT GCTTGTGCCGTTTGTGAGGGCTGAGGATGCATCGCTGGTACAGGACTCGG TATATGCAGCCATGCGTGTGGTGGCGGTACCCTCCATCCGTTTTTACCAA GATACCGTTTTGGCGCTTGTCTGCCAAAAGTTTCCCGACGTGGCGATTCC TTTCCTTGTGACGGCTTTGACCGACCTCCAAGTCCCGCCATTAACCAGCG GCTCGTTCATTTCTGCGGCGGGTTTGGCTTGCTTGACCAAAAATACTGCT TTCCCAGGTGGAGAGCTTCCACAAGACTACGTTGCCCCCCTGCTCCAAGC CATCTTGCCGTGGATTTCAGGGCAACACGCAATTACGCGTATCGTCGCAC AGCTCCTATCCTTTTATCTCTTGTCTCGGCTACCCACAGGAGATCTGGAT GCGGTCAAAGCTGTGGAATCGGGTCAGAGCGGGAAAGGCGGAGTCAGCAA CAGTAGAATCTCTGCTGGCAGTATTGACGCGACTTTCCTGAGTCAAACTT TGAATTTCTTGAAAAACCACCGCGAGATAGCGAGCTTGCGCCGCAAAGCT ATGCTGCGCTTCCAGGAAACTTCAGTACCCGCCTGCTGTACTGTATCACA CCTTCTTGCCCAGCACTCGAATGAGCAAGGCGGTGTGCGTGACCTGGTGC CGGAGCATGTAGAAGAGGTGCTGCGGGAAGCGATGACGTCTCTGTATCGA GACCTGGAGGCAGAACACCACATGACTTACACATCCATAGCGCCCGTGGT CCGAGGAGAAAATCTTTTTGAGCTTAAGCAAGACGCAAGTAGTGCCCGAG CCTTGTTGCTAGAGGGGAATGCAGAGGCAGAGGCGGCCGACTGTTATTCG CTACAAAAAAAGATTGTGGTCTCTGACGTGCTGACTTCACTTCTCCCGGC TCCACCCACCGACAAATCCCAAAATACGCGAGGGGTTCTGCTGCAAGAGC TCGTGGTGTGCGCGTCATTGCTGGAGCGGGTACCTAATGTAGCCGGCCTC GCCCGAACATGCGAGATCTTCGCCGCATCCAAACTTATTATTCCCGACTT GCGCATGCTCAAAGACCCGCTATTTGACCAAATTAGCAGCAGTGCGTGGA AATGGATTCAGATGGAGGAGATCCATGAAGGGCACACTCGCGCCTTTCTT CGGCGCTACAAACAGGAGGGTTACACGGTGGTGGGGCTCGAGCAAACAGA CGACAGCTCGTGCCTCTCTAGGGTGGCTTTGCCTCGCAAGATGCTCTTGC TTTTGGGCCGCGAGAAGGAGGGCATTCCCGTTCCACTGCTTCAAGAGTTG GATTTGGTTGTGCAGATTCCTCAGCTGGGTCTAGTGAGGAGTTTAAATGT GCACGTGAGCGCGTCTCTCATTGTATGGGAGTATTTTAAGCAGCATCGCA AAAGCTGCGGTAAGGACCAACAATGGTAGATTAGAACTAATTGAAATCAT CAAAGTACAATGCATGTATTGTCCTAG
back to top

Coding sequence (CDS) from alignment at chr1:881746..887072+

>NO01G03380.2 ID=NO01G03380.2|Name=NO01G03380.2|organism=Nannochloropsis oceanica|type=CDS|length=4167bp|location=Sequence derived from alignment at chr1:881746..887072+ (Nannochloropsis oceanica)
ATGCTCTGCGTCTTACAAGAAGTCCTTGTCCCTGCGCTCGGCCTCAATCG
GTCTGACCCTACCTTCTGGACTATGCTTCGACGCGGACTCGCCAGCGACT
GCAACGCGGTTCGTAAGCGTGCCTTGTACGTACTAAGCGCCCAGGTAGAG
ATGGCCAAAACTGTCGGTGCTGTTTCTACCGGTGCTGGTGCCACGGCCCA
TTTTCCTGCTTCTGCTTCGTCTCCTCTTAAGGTCAAGTTCCTCACCTGGT
GGCGACGCTTTGTCCAAGTCATGGACACATTCAATACGGCTCTTGAAACA
CATCTCCTGAATCAAGCTCTACCTGTCTGTACGTCATTGCTGCGTGAGGC
TTTTGCGTTCACCGGGAACGAGGAAGAGGAAGGGCAGGATGGCATGCTCA
ACGGCAACGCGGCCTCTTTGCTCCCTCTACCTTCGTTTGGATGGGCAGAG
GCGCTTCTTGGCCGCGCAATAAGTGTGACGAATTTTTCCGTCCAGCGCAC
GTACTTGCTGTGGCTGATGAGTGAGGAGGGTGTCGCTTGCGTCCCCTTGA
GCAAGCTTGGTCCCCGCTTTATTATCACTAAAATTCTGCCGGCTTTCAAG
GAAATGAGCAACTTGAAGGACGACAGGCCAAAGCTTGGACGCTTCCTGGC
GCGGGCCATTGTTGCGCAAGAAGAGGATAATGGAGCGAGGCGGGAGGTGC
TTGTGGCGGTGTTTGAGTATTGCAAGGATGTTGTGCGAGGCGCCGTGGTA
CGGCAGACACTGCTCGGGTTTATAGAGTTCCGCGACGTCTTCCAGCAGAC
ATCCCCTTGTCTGCAAATCGATGATGTAGAGCTGGCTCGTCTCCTCGTCT
GTGTCATGAACTCACAATACAACCAAGGGCTCAGTCAAATATTAGCTGGG
CGGATGGTGGATTGCTTGGAGGTCTTTGCCGATTGTCAATCCCTCATTGC
TGCTGGGCCTCACGGCGCCGCCGTCGTGCGTACCTTCCTCTTAGACCTTC
CGCAGAAAGTTGCATTGGACAGCCACTATAACCGTCTAGTTGAGTGGTTG
GGGGTGTCGACAGTTGCGGGCGGGGCCACAGGATGGTGGGGCGAGAGCAC
TACATCGGCCATCGAAGCTTTGATAAACGGTAGTGGTGGTCACGGCAGTG
GCGAGTTGACCATGGCAGCTTCAGGAGGCTCTGTCTGGTCGTCTATGGAA
GGGGGCCAGTGCTTGGAAAATGTTAATCAGTCGAGCATGGCATGCTGTGC
TTTGGCTTGCATGTACTTGCCGGATCTTGAGTTGGCACACGCCCTTGCTT
CAGCTCTGCGGGTCCTGGGCCGCATTCACTCTCATCCCTACTTGACCCTG
CGGTCGTGTCTGGCTTCCCTCTGTTTGCTGCGGTCACTGGGTTCCCTTTT
GCGACGAAAGCACCGTCCGTGTTTGTACGAGATTCTGCGGCAACACACAG
GGGAAGTGGCCGAGTTTCTTGCTGCCAAGCTTCAGGAGAGCTGCTTGTGT
ACCCGGGCCGACCTGTACGATAGTGGCAATTCAGGCGTATTTGGACTGTG
CGTGCAGGCGTTTGGGACGGTGATATGGCTGGCTGCGGATGTAGGGCAAG
TTGCCGGTGCTATCCAGCGTGTGCTGAAAACGTGTTCAAGCGTGCTTAAT
GCTGGCGTGGATGATGCAGCGGCTGGTGATGCAGGGGAAATTCGTCAGCT
GGGGCGTGCAGTAGCCGTGCTGCGAAGCGTCCTGGAAGCCCTCCTGCTGC
AATCCAGCACGAGACTTTTTGGTGAAGTTAAATTGGACTGGGCTGCACGG
CTTATGAGCAGCCTTGTCAAAGCCGCTGCCAGCTTGGGCCTCCGACGAGG
GAAGCGGGACTTTTTTTTGTCCGTGGCACTCGAGAATGTATGGCGGTGCT
TGGTTCTTCTTTACAAAATTCAACGCCAGGGCGGTTTGGTGAAACCTACA
GATAACCCTCTCCCCGTGGATATGGCATTTCTTTTTTCCGCATTGGAGAT
GTCAAGCCGCAAATCGGTGCCCGATATTCTCTGCTGCATTAGCTGTCAAC
TTCCGTTTCACCTCGGCATATCCGACAGCAACGGCACGGAGCAGGAACGA
CAAACGCGTCTCGACAACGTAGTCACGCTTGTGCTAGGCTGCATTGAAGA
ATGTAACTACAGACAAAGTGTCATGCAACTTGCCATCGAGATGGTGCTTT
CGCCGGCCATACTCGCAGACCCCACCCTCTGTCGAGGAACAGATACCCCG
GTGCGGCGTTTCTTTCATCGGCTTGTTGACCTCGGCACTGTCAAGCGGGC
CTATATTCTTCTGAATGCCACGGCCAGGTTAACATCTATTTGGCGGACAG
AACCGGCGGCTGCAGCACTTGCTGGGGAATTCGTAGAGGAAATAGCGCAA
CTTTTGGTGCTTCGTGAGTTGGAAGAAGATGTGTACCAGCAAGTGAATGA
GGATGAGCGAGATTCCGAGCGAGATTCCGAGACAGACGTCATCAGGGAGG
AAATCAGAGAGCCCCAGGAAGAACACTCTGTCGCAGTGCTTCGCATCTTG
GTGCTTGGGTGTTTGTGCGATCTATTCCGACCACCAGATGATGGGGGAAA
GGCCAAACAGGGCGAATTTTTGACCCCCCTTCTCACTCGTTTGTTTGAAA
TAGCAGCTGCCGTAGATTTAAGAAGGGCTCAAATTCTGACTTCCCCCGAC
TACTCGTGCAAGCTTCGGGCGTGGCAAGCCATTTGCGTGCTTGTGCCGTT
TGTGAGGGCTGAGGATGCATCGCTGGTACAGGACTCGGTATATGCAGCCA
TGCGTGTGGTGGCGGTACCCTCCATCCGTTTTTACCAAGATACCGTTTTG
GCGCTTGTCTGCCAAAAGTTTCCCGACGTGGCGATTCCTTTCCTTGTGAC
GGCTTTGACCGACCTCCAAGTCCCGCCATTAACCAGCGGCTCGTTCATTT
CTGCGGCGGGTTTGGCTTGCTTGACCAAAAATACTGCTTTCCCAGGTGGA
GAGCTTCCACAAGACTACGTTGCCCCCCTGCTCCAAGCCATCTTGCCGTG
GATTTCAGGGCAACACGCAATTACGCGTATCGTCGCACAGCTCCTATCCT
TTTATCTCTTGTCTCGGCTACCCACAGGAGATCTGGATGCGGTCAAAGCT
GTGGAATCGGGTCAGAGCGGGAAAGGCGGAGTCAGCAACAGTAGAATCTC
TGCTGGCAGTATTGACGCGACTTTCCTGAGTCAAACTTTGAATTTCTTGA
AAAACCACCGCGAGATAGCGAGCTTGCGCCGCAAAGCTATGCTGCGCTTC
CAGGAAACTTCAGTACCCGCCTGCTGTACTGTATCACACCTTCTTGCCCA
GCACTCGAATGAGCAAGGCGGTGTGCGTGACCTGGTGCCGGAGCATGTAG
AAGAGGTGCTGCGGGAAGCGATGACGTCTCTGTATCGAGACCTGGAGGCA
GAACACCACATGACTTACACATCCATAGCGCCCGTGGTCCGAGGAGAAAA
TCTTTTTGAGCTTAAGCAAGACGCAAGTAGTGCCCGAGCCTTGTTGCTAG
AGGGGAATGCAGAGGCAGAGGCGGCCGACTGTTATTCGCTACAAAAAAAG
ATTGTGGTCTCTGACGTGCTGACTTCACTTCTCCCGGCTCCACCCACCGA
CAAATCCCAAAATACGCGAGGGGTTCTGCTGCAAGAGCTCGTGGTGTGCG
CGTCATTGCTGGAGCGGGTACCTAATGTAGCCGGCCTCGCCCGAACATGC
GAGATCTTCGCCGCATCCAAACTTATTATTCCCGACTTGCGCATGCTCAA
AGACCCGCTATTTGACCAAATTAGCAGCAGTGCGTGGAAATGGATTCAGA
TGGAGGAGATCCATGAAGGGCACACTCGCGCCTTTCTTCGGCGCTACAAA
CAGGAGGGTTACACGGTGGTGGGGCTCGAGCAAACAGACGACAGCTCGTG
CCTCTCTAGGGTGGCTTTGCCTCGCAAGATGCTCTTGCTTTTGGGCCGCG
AGAAGGAGGGCATTCCCGTTCCACTGCTTCAAGAGTTGGATTTGGTTGTG
CAGATTCCTCAGCTGGGTCTAGTGAGGAGTTTAAATGTGCACGTGAGCGC
GTCTCTCATTGTATGGGAGTATTTTAAGCAGCATCGCAAAAGCTGCGGTA
AGGACCAACAATGGTAG
back to top
Synonyms
Publications