NO01G03370.1, NO01G03370.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G03370.1
Unique NameNO01G03370.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1942
Alignment locationchr1:879248..881613 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:879248..881613 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G03370.1 vs.
Match: EWM29269.1 (rho gtpase-activating protein 12 [Nannochloropsis gaditana])

HSP 1 Score: 365.9 bits (938), Expect = 2.200e-97
Identity = 256/544 (47.06%), Postives = 307/544 (56.43%), Query Frame = 0 
Query:    1 MGDQGPGHDPHKREHGHKKGSFLNKFFSRQGSIKFSGGGHGSCGAGNAEREEAAEGRASAPMRRSEENPYHYNRFHLPISPLGSSAPSFPSLRYLAGAGVRAAEGVRRGGDKGGGLDRGGGRR--GRGEGKLNSQRLLNPLTPAAVAALKIALDYLGSTALGEEGLYRVSGNKLDVDRLKVVLAAGLLSSSDILQSHYPDKHVIAGAIKKVLQEHEPLLGYHSYADFVSVGAGSPGRLNEDEIVLEEEGEEGGPRRSQISELSNSCTSSSSSGSSSCRLSGGNSSSKEGRYRDLVLQLRPTSRELLGHLLRHLRMVAARSEENKMTAENLAVTIGLNLLRKSESVAGVSIQQLEKERAVIMDLIVLCPLLFPSDGMGGNKNGNKNKTHPPLKPFHAPRVIKSAPASRTPRHFFPLTDEVTRKTAPLS---ATGG--GDDDRDVPVFLKPPLKPLKR----LHEGTGSRNNSTTHAATTTINSHPK--------TSDCTGSESNSSVDDRSVCSALPRVAEARPNPLASTLPFRPPDKPERTSPR 526
            MGD    H+ H    GHKKGSFLNK F+RQ S+K +  G+G     +   E+  EGRAS+P R+  E  +  +RFH P SPL SS P F S+R  AG  V   EG+   G +GG  ++ G  R  G GE +L   R L PLTPAA A++K ALD+LGSTALG EGLYRVSGNKLDVD LK ++A GLL S++ L+SHYPDKHV+AGAIKKVLQEHEPLL Y  YADFV+                                 S + T+    G+   R     S  KEGRYR LV  L P  R+LLGHL+RHL  VA R E N+MT ENLAVT+GL+LLRKSESV  VSI QLEKERAVIMDLI LCP+LFP+D     K         P KPFH PR +KSAP  R   HFF LTDE+ R+TAPLS   A  G  G+      V LKPP KPL R    L  G+ SR             SH            DC  +       D ++   + +V+   P+      P  PP KP RT+P+
Sbjct:   41 MGDDAYRHNTHHHHAGHKKGSFLNKLFARQSSLK-AAIGYGPSRGDHECSEKDDEGRASSPSRQQGE--HQGSRFHFPHSPLSSSTPIFSSIRTRAGTKV-GTEGLT--GGRGGTREKSGAIRDCGTGEERLTG-RFLPPLTPAASASVKTALDFLGSTALGVEGLYRVSGNKLDVDSLKALMAEGLLVSAETLRSHYPDKHVVAGAIKKVLQEHEPLLSYRLYADFVAA--------------------------------SFNPTAGPLEGNEGDRACKEESGGKEGRYRALVQDLSPAPRDLLGHLMRHLVRVAERKEANRMTPENLAVTVGLHLLRKSESVTEVSIHQLEKERAVIMDLIALCPVLFPADAQASKKQA-------PAKPFHLPRSVKSAPPGREACHFFSLTDEMARRTAPLSMRTAEEGIDGEHCAGASVTLKPPPKPLGRPPNPLMTGSSSRQEHCLKMDHGRNRSHVNQGNMATGHVMDCAMNREEIRKKDLAIAPEVWKVSTGLPS-FPGISPQHPPAKPSRTTPQ 537
The following BLAST results are available for this feature:
BLAST of NO01G03370.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29269.12.200e-9747.06rho gtpase-activating protein 12 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G03370NO01G03370Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G03370.1NO01G03370.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G03370.1.cds1NO01G03370.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03370.1.cds2NO01G03370.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03370.1.cds3NO01G03370.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03370.1.cds4NO01G03370.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G03370.1 ID=NO01G03370.1|Name=NO01G03370.1|organism=Nannochloropsis oceanica|type=mRNA|length=1942bp
TACAGAAGATATACAAGAGATTGGCCGCGAGGTGCTGGACGCGGGTGCTG
GCTGCTGGAAGGATGACCACGCCATTCCTACAGATCTGAAAAAGCGAGGA
AGGCAAAAAAGCCCATTATTGAAGGCGGGCTCAGGAGCACGCCGCGGCAG
CGAGTAATGGGAGACCAAGGACCCGGCCACGACCCACACAAGCGTGAGCA
CGGGCATAAGAAGGGTAGCTTCCTGAACAAGTTTTTTTCTCGCCAGGGGA
GCATCAAATTCAGTGGTGGAGGACATGGCAGCTGCGGGGCTGGAAATGCG
GAGAGGGAGGAGGCGGCGGAAGGCCGGGCCTCGGCCCCCATGCGTCGGTC
AGAAGAGAATCCATACCATTATAATCGTTTTCACCTCCCCATTTCTCCTT
TGGGCTCTTCCGCGCCCTCCTTTCCTAGCTTGCGGTATCTAGCAGGGGCA
GGCGTGCGGGCAGCCGAAGGCGTCAGGCGGGGAGGAGACAAGGGTGGTGG
TCTCGACAGAGGAGGAGGAAGAAGAGGTCGAGGCGAAGGAAAGCTGAATT
CTCAACGGCTCTTAAATCCTTTGACACCTGCAGCAGTGGCTGCTTTGAAG
ATCGCGCTGGATTACTTGGGATCAACGGCGTTGGGGGAGGAAGGTCTCTA
CCGAGTGTCGGGCAATAAACTCGACGTTGACAGGCTAAAGGTCGTACTGG
CGGCCGGGCTACTGTCCTCGTCCGATATTCTTCAATCCCATTATCCTGAT
AAGCACGTCATTGCCGGGGCTATCAAGAAGGTATTGCAAGAACACGAACC
TCTTCTAGGCTATCACTCATACGCTGATTTTGTCTCGGTTGGAGCAGGCT
CACCAGGAAGGCTTAACGAGGATGAGATAGTGTTGGAGGAAGAAGGGGAG
GAGGGAGGGCCAAGAAGATCGCAAATTAGCGAACTCAGCAACAGCTGTAC
GAGCAGTAGTAGCAGTGGAAGCAGCAGTTGCCGTCTAAGTGGTGGCAACA
GCAGTAGTAAGGAAGGGAGGTATCGTGATTTGGTGCTGCAGTTAAGGCCG
ACGTCGAGGGAGTTGCTCGGACACCTATTAAGGCATTTGCGGATGGTGGC
GGCCAGAAGTGAGGAGAACAAAATGACGGCCGAGAATCTAGCGGTCACTA
TCGGCTTGAACCTGTTGAGGAAGTCTGAGTCGGTTGCAGGCGTGAGCATT
CAACAGCTGGAAAAAGAGCGTGCAGTCATTATGGACTTGATTGTCCTCTG
CCCTCTCCTCTTCCCTTCGGACGGGATGGGTGGAAACAAAAACGGCAACA
AAAACAAAACACACCCTCCACTCAAGCCTTTTCATGCGCCTCGAGTCATC
AAATCTGCCCCCGCAAGTCGCACACCGCGGCATTTTTTCCCTTTGACTGA
TGAAGTAACACGGAAAACAGCCCCCCTTTCGGCGACGGGAGGTGGGGATG
ATGATAGGGACGTCCCTGTCTTCCTTAAACCTCCCCTCAAGCCGCTGAAG
CGGCTTCACGAGGGCACAGGCAGCAGAAACAATAGCACGACACATGCAGC
CACCACCACCATCAACAGCCATCCTAAGACTAGTGACTGCACGGGAAGCG
AAAGCAACAGCAGCGTTGATGACCGGAGCGTTTGCAGCGCACTTCCGCGC
GTCGCCGAGGCACGTCCAAACCCTCTTGCTTCTACCCTACCCTTCCGGCC
GCCGGACAAGCCTGAACGGACCTCCCCACGCCGCGCCTCTTGGAATGAGT
CTTCCGCTTTTTCTTTGCTTGCCTTGTCAGTGTCATCGTGCAGCTTGTCG
GCGGAGGGGAATGGGGAAACAGTGGCTAACGGACAAAGCCGAGCAGTTTA
GCGACCTTTTTGTGAATAGAAGACAATTGAAATATACACATAGTATATAA
GCAAAGTAGGCAACAAACGTATGGGCATGGTATTTGGGCAAC
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protein sequence of NO01G03370.1

>NO01G03370.1-protein ID=NO01G03370.1-protein|Name=NO01G03370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=565bp
MGDQGPGHDPHKREHGHKKGSFLNKFFSRQGSIKFSGGGHGSCGAGNAER
EEAAEGRASAPMRRSEENPYHYNRFHLPISPLGSSAPSFPSLRYLAGAGV
RAAEGVRRGGDKGGGLDRGGGRRGRGEGKLNSQRLLNPLTPAAVAALKIA
LDYLGSTALGEEGLYRVSGNKLDVDRLKVVLAAGLLSSSDILQSHYPDKH
VIAGAIKKVLQEHEPLLGYHSYADFVSVGAGSPGRLNEDEIVLEEEGEEG
GPRRSQISELSNSCTSSSSSGSSSCRLSGGNSSSKEGRYRDLVLQLRPTS
RELLGHLLRHLRMVAARSEENKMTAENLAVTIGLNLLRKSESVAGVSIQQ
LEKERAVIMDLIVLCPLLFPSDGMGGNKNGNKNKTHPPLKPFHAPRVIKS
APASRTPRHFFPLTDEVTRKTAPLSATGGGDDDRDVPVFLKPPLKPLKRL
HEGTGSRNNSTTHAATTTINSHPKTSDCTGSESNSSVDDRSVCSALPRVA
EARPNPLASTLPFRPPDKPERTSPRRASWNESSAFSLLALSVSSCSLSAE
GNGETVANGQSRAV*
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mRNA from alignment at chr1:879248..881613+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G03370.1 ID=NO01G03370.1|Name=NO01G03370.1|organism=Nannochloropsis oceanica|type=mRNA|length=2366bp|location=Sequence derived from alignment at chr1:879248..881613+ (Nannochloropsis oceanica)
TACAGAAGATATACAAGAGATTGGCCGCGAGGTGCTGGACGCGGGTGCTG
GCTGCTGGAAGGATGACCACGCCATTCCTACAGATCTGAAAAAGCGAGGA
AGGCAAAAAAGCCCATTATTGAAGGCGGGCTCAGGAGCACGCCGCGGCAG
CGAGTAATGGGAGACCAAGGACCCGGCCACGACCCACACAAGCGTGAGCA
CGGGCATAAGAAGGGTAGCTTCCTGAACAAGTTTTTTTCTCGCCAGGGGA
GCATCAAATTCAGTGGTGGAGGACATGGCAGCTGCGGGGCTGGAAATGCG
GAGAGGGAGGAGGCGGCGGAAGGCCGGGCCTCGGCCCCCATGCGTCGGTC
AGAAGAGAATCCATACCATTATAATCGTTTTCACCTCCCCATTTCTCCTT
TGGGCTCTTCCGCGCCCTCCTTTCCTAGCTTGCGGTATCTAGCAGGGGCA
GGCGTGCGGGCAGCCGAAGGCGTCAGGCGGGGAGGAGACAAGGGTGGTGG
TCTCGACAGAGGAGGAGGAAGAAGAGGTCGAGGCGAAGGAAAGCTGAATT
CTCAACGGCTCTTAAATCCTTTGACACCTGCAGCAGTGGCTGCTTTGAAG
ATCGCGCTGGATTACTTGGGGTTAGTGTGTGTTTGAAGGGCATCGGTGGA
AGGATGAGGTCGGAGGGAAAGAGAGAGGTTAAGATTGATGGTCTAGCAAC
CTCATCTTCCGTATCTCGTTTCTCACTTAATCTCTTGTATGATCGTAATG
TTGTATGTTTTTATTGAATCTCACCATCCATTTCTCTTCACCACCACAGA
TCAACGGCGTTGGGGGAGGAAGGTCTCTACCGAGTGTCGGGCAATAAACT
CGACGTTGACAGGCTAAAGGTCGTACTGGCGGCCGGGCTACTGTCCTCGT
CCGATATTCTTCAATCCCATTATCCTGATAAGCACGTCATTGCCGGGGCT
ATCAAGAAGGTGGGAGGAAGGTGGCTGGGTCTGACCTACCCCCTCTCTCG
CCAACCCCCCTCACCCTACGCTCTGTGCTCTTCCCTCCTCAACCTCGCTC
TATGTGCCCACACTCTCTCATTCCTACTCCAGGTATTGCAAGAACACGAA
CCTCTTCTAGGCTATCACTCATACGCTGATTTTGTCTCGGTTGGAGCAGG
CTCACCAGGAAGGCTTAACGAGGATGAGATAGTGTTGGAGGAAGAAGGGG
AGGAGGGAGGGCCAAGAAGATCGCAAATTAGCGAACTCAGCAACAGCTGT
ACGAGCAGTAGTAGCAGTGGAAGCAGCAGTTGCCGTCTAAGTGGTGGCAA
CAGCAGTAGTAAGGAAGGGAGGTATCGTGATTTGGTGCTGCAGTTAAGGC
CGACGTCGAGGGAGTTGCTCGGACACCTATTAAGGCATTTGCGGATGGTG
GCGGCCAGAAGTGAGGAGAACAAAATGACGGCCGAGAATCTAGCGGTCAC
TATCGGCTTGAACCTGTTGAGGAAGTCTGAGTCGGTTGCAGGTAAGTTTG
AGAAATGAAGGAACGTGGGAGAGGTGTAAGGGTACGTATGAAGGTCTGCT
CTGTGTGTATTTTTTAAAATCCCTCACGGCCCTCTTTCTTTCCTTTCATT
CCAACCAATACAGGCGTGAGCATTCAACAGCTGGAAAAAGAGCGTGCAGT
CATTATGGACTTGATTGTCCTCTGCCCTCTCCTCTTCCCTTCGGACGGGA
TGGGTGGAAACAAAAACGGCAACAAAAACAAAACACACCCTCCACTCAAG
CCTTTTCATGCGCCTCGAGTCATCAAATCTGCCCCCGCAAGTCGCACACC
GCGGCATTTTTTCCCTTTGACTGATGAAGTAACACGGAAAACAGCCCCCC
TTTCGGCGACGGGAGGTGGGGATGATGATAGGGACGTCCCTGTCTTCCTT
AAACCTCCCCTCAAGCCGCTGAAGCGGCTTCACGAGGGCACAGGCAGCAG
AAACAATAGCACGACACATGCAGCCACCACCACCATCAACAGCCATCCTA
AGACTAGTGACTGCACGGGAAGCGAAAGCAACAGCAGCGTTGATGACCGG
AGCGTTTGCAGCGCACTTCCGCGCGTCGCCGAGGCACGTCCAAACCCTCT
TGCTTCTACCCTACCCTTCCGGCCGCCGGACAAGCCTGAACGGACCTCCC
CACGCCGCGCCTCTTGGAATGAGTCTTCCGCTTTTTCTTTGCTTGCCTTG
TCAGTGTCATCGTGCAGCTTGTCGGCGGAGGGGAATGGGGAAACAGTGGC
TAACGGACAAAGCCGAGCAGTTTAGCGACCTTTTTGTGAATAGAAGACAA
TTGAAATATACACATAGTATATAAGCAAAGTAGGCAACAAACGTATGGGC
ATGGTATTTGGGCAAC
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Coding sequence (CDS) from alignment at chr1:879248..881613+

>NO01G03370.1 ID=NO01G03370.1|Name=NO01G03370.1|organism=Nannochloropsis oceanica|type=CDS|length=1695bp|location=Sequence derived from alignment at chr1:879248..881613+ (Nannochloropsis oceanica)
ATGGGAGACCAAGGACCCGGCCACGACCCACACAAGCGTGAGCACGGGCA
TAAGAAGGGTAGCTTCCTGAACAAGTTTTTTTCTCGCCAGGGGAGCATCA
AATTCAGTGGTGGAGGACATGGCAGCTGCGGGGCTGGAAATGCGGAGAGG
GAGGAGGCGGCGGAAGGCCGGGCCTCGGCCCCCATGCGTCGGTCAGAAGA
GAATCCATACCATTATAATCGTTTTCACCTCCCCATTTCTCCTTTGGGCT
CTTCCGCGCCCTCCTTTCCTAGCTTGCGGTATCTAGCAGGGGCAGGCGTG
CGGGCAGCCGAAGGCGTCAGGCGGGGAGGAGACAAGGGTGGTGGTCTCGA
CAGAGGAGGAGGAAGAAGAGGTCGAGGCGAAGGAAAGCTGAATTCTCAAC
GGCTCTTAAATCCTTTGACACCTGCAGCAGTGGCTGCTTTGAAGATCGCG
CTGGATTACTTGGGATCAACGGCGTTGGGGGAGGAAGGTCTCTACCGAGT
GTCGGGCAATAAACTCGACGTTGACAGGCTAAAGGTCGTACTGGCGGCCG
GGCTACTGTCCTCGTCCGATATTCTTCAATCCCATTATCCTGATAAGCAC
GTCATTGCCGGGGCTATCAAGAAGGTATTGCAAGAACACGAACCTCTTCT
AGGCTATCACTCATACGCTGATTTTGTCTCGGTTGGAGCAGGCTCACCAG
GAAGGCTTAACGAGGATGAGATAGTGTTGGAGGAAGAAGGGGAGGAGGGA
GGGCCAAGAAGATCGCAAATTAGCGAACTCAGCAACAGCTGTACGAGCAG
TAGTAGCAGTGGAAGCAGCAGTTGCCGTCTAAGTGGTGGCAACAGCAGTA
GTAAGGAAGGGAGGTATCGTGATTTGGTGCTGCAGTTAAGGCCGACGTCG
AGGGAGTTGCTCGGACACCTATTAAGGCATTTGCGGATGGTGGCGGCCAG
AAGTGAGGAGAACAAAATGACGGCCGAGAATCTAGCGGTCACTATCGGCT
TGAACCTGTTGAGGAAGTCTGAGTCGGTTGCAGGCGTGAGCATTCAACAG
CTGGAAAAAGAGCGTGCAGTCATTATGGACTTGATTGTCCTCTGCCCTCT
CCTCTTCCCTTCGGACGGGATGGGTGGAAACAAAAACGGCAACAAAAACA
AAACACACCCTCCACTCAAGCCTTTTCATGCGCCTCGAGTCATCAAATCT
GCCCCCGCAAGTCGCACACCGCGGCATTTTTTCCCTTTGACTGATGAAGT
AACACGGAAAACAGCCCCCCTTTCGGCGACGGGAGGTGGGGATGATGATA
GGGACGTCCCTGTCTTCCTTAAACCTCCCCTCAAGCCGCTGAAGCGGCTT
CACGAGGGCACAGGCAGCAGAAACAATAGCACGACACATGCAGCCACCAC
CACCATCAACAGCCATCCTAAGACTAGTGACTGCACGGGAAGCGAAAGCA
ACAGCAGCGTTGATGACCGGAGCGTTTGCAGCGCACTTCCGCGCGTCGCC
GAGGCACGTCCAAACCCTCTTGCTTCTACCCTACCCTTCCGGCCGCCGGA
CAAGCCTGAACGGACCTCCCCACGCCGCGCCTCTTGGAATGAGTCTTCCG
CTTTTTCTTTGCTTGCCTTGTCAGTGTCATCGTGCAGCTTGTCGGCGGAG
GGGAATGGGGAAACAGTGGCTAACGGACAAAGCCGAGCAGTTTAG
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Synonyms
Publications