NO01G03360.1, NO01G03360.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G03360.1
Unique NameNO01G03360.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length288
Alignment locationchr1:878608..878985 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:878608..878985 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G03360.1 vs.
Match: EJK60896.1 (hypothetical protein THAOC_18687, partial [Thalassiosira oceanica])

HSP 1 Score: 78.6 bits (192), Expect = 1.200e-11
Identity = 47/97 (48.45%), Postives = 60/97 (61.86%), Query Frame = 0 
Query:   13 GCGRRVEDTLTEIVEGKLNPEALPYITVML----DRATGT-YFSLNNRRLWVFKECKKRGLLEH------IRVRVR-----TEESRYTAETCALEAK 94
            GCGR V  TL EI  G+L P ALP I V++    D   G  YFSLNNRRLWV K+C + GLL++      I+VRVR     +E  RY+ + C+L+AK
Sbjct:  192 GCGRSVVGTLDEIRGGRLEPSALPPIQVLVGPDGDDGMGPWYFSLNNRRLWVLKQCHREGLLDNERYGNMIQVRVRVPKSDSERERYSVKNCSLDAK 288
The following BLAST results are available for this feature:
BLAST of NO01G03360.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EJK60896.11.200e-1148.45hypothetical protein THAOC_18687, partial [Thalass... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G03360NO01G03360Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G03360.1NO01G03360.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G03360.1.cds1NO01G03360.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03360.1.cds2NO01G03360.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G03360.1 ID=NO01G03360.1|Name=NO01G03360.1|organism=Nannochloropsis oceanica|type=mRNA|length=288bp
ATGGGAGCCAAGAAGGGCGGCAGCAGTGGAGGGGGAGGCTGCGGGCGGAG
GGTGGAGGACACATTGACAGAAATTGTGGAGGGAAAACTGAATCCGGAAG
CGCTGCCTTATATAACTGTCATGTTGGACCGCGCCACGGGGACGTACTTC
TCTCTCAACAACCGACGCTTGTGGGTGTTCAAGGAATGCAAGAAGCGAGG
TCTATTGGAACACATCCGCGTGCGCGTACGGACTGAAGAATCTCGGTATA
CAGCCGAAACCTGTGCGCTGGAAGCCAAGATGTGTTAA
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protein sequence of NO01G03360.1

>NO01G03360.1-protein ID=NO01G03360.1-protein|Name=NO01G03360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=96bp
MGAKKGGSSGGGGCGRRVEDTLTEIVEGKLNPEALPYITVMLDRATGTYF
SLNNRRLWVFKECKKRGLLEHIRVRVRTEESRYTAETCALEAKMC*
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mRNA from alignment at chr1:878608..878985-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G03360.1 ID=NO01G03360.1|Name=NO01G03360.1|organism=Nannochloropsis oceanica|type=mRNA|length=378bp|location=Sequence derived from alignment at chr1:878608..878985- (Nannochloropsis oceanica)
ATGGGAGCCAAGAAGGGCGGCAGCAGTGGAGGGGGAGGTAAGGGTGGCCG
GCCGCAGCCCTTTTTCACAGAGGTGGACCCTGCTATTATCTATTTCTCGC
ACGCGCGCATCCGCACAACATTTTCAGGCTGCGGGCGGAGGGTGGAGGAC
ACATTGACAGAAATTGTGGAGGGAAAACTGAATCCGGAAGCGCTGCCTTA
TATAACTGTCATGTTGGACCGCGCCACGGGGACGTACTTCTCTCTCAACA
ACCGACGCTTGTGGGTGTTCAAGGAATGCAAGAAGCGAGGTCTATTGGAA
CACATCCGCGTGCGCGTACGGACTGAAGAATCTCGGTATACAGCCGAAAC
CTGTGCGCTGGAAGCCAAGATGTGTTAA
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Coding sequence (CDS) from alignment at chr1:878608..878985-

>NO01G03360.1 ID=NO01G03360.1|Name=NO01G03360.1|organism=Nannochloropsis oceanica|type=CDS|length=288bp|location=Sequence derived from alignment at chr1:878608..878985- (Nannochloropsis oceanica)
ATGGGAGCCAAGAAGGGCGGCAGCAGTGGAGGGGGAGGCTGCGGGCGGAG
GGTGGAGGACACATTGACAGAAATTGTGGAGGGAAAACTGAATCCGGAAG
CGCTGCCTTATATAACTGTCATGTTGGACCGCGCCACGGGGACGTACTTC
TCTCTCAACAACCGACGCTTGTGGGTGTTCAAGGAATGCAAGAAGCGAGG
TCTATTGGAACACATCCGCGTGCGCGTACGGACTGAAGAATCTCGGTATA
CAGCCGAAACCTGTGCGCTGGAAGCCAAGATGTGTTAA
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Synonyms
Publications