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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:876599..878465 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G03350.1 vs.
Match: EWM29264.1 (septum site-determining protein [Nannochloropsis gaditana]) HSP 1 Score: 522.3 bits (1344), Expect = 1.000e-144 Identity = 259/273 (94.87%), Postives = 270/273 (98.90%), Query Frame = 0
Query: 35 RSIGSDSRVVCITSGKGGVGKTTTAASIGMGLALKGKRTCVIDFDIGLRNLDIHLGAERRVIFDFVHVLHGDCTLKQAMIKDKRNPNLYLLAASQTKDKNALTVEGVGKMLAEMRREFDFIICDSPAGIESGAKHAMYFADDAIIVTNPELSSCRDSDKMIGFISSKSKRAELGQEPVRQSLLVTRYDPERAEKEECLRLEDIKELLGLELLGVIPESKCILTATNIGQPVICMPDQDAGQAYMDTVERFMGEEKEFRFLSPKPTGILSMLFS 308
RS+ SDSRV+CITSGKGGVGKTTTAASIGMGLALKGK+TCVIDFDIGLRNLDIHLGAERRVIFDFVHVL GDCTLKQAMIKDKRNPNL+LLAASQTKDKNALTV+ VGKMLAEMRREFDFIICDSPAGIESGA+HAMYFADDAIIVTNPELSSCRDSDKMIGFISS+SKRAELGQEPVRQSLLVTRYDPERA+KEECLRLEDIKELLGLELLGVIPESKCILTATN+GQPVICMPDQDAGQAYMDTVERF+GEEKEFRFLSP+PTGILSMLFS
Sbjct: 44 RSVASDSRVLCITSGKGGVGKTTTAASIGMGLALKGKKTCVIDFDIGLRNLDIHLGAERRVIFDFVHVLQGDCTLKQAMIKDKRNPNLFLLAASQTKDKNALTVDAVGKMLAEMRREFDFIICDSPAGIESGARHAMYFADDAIIVTNPELSSCRDSDKMIGFISSRSKRAELGQEPVRQSLLVTRYDPERAQKEECLRLEDIKELLGLELLGVIPESKCILTATNLGQPVICMPDQDAGQAYMDTVERFLGEEKEFRFLSPRPTGILSMLFS 316
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G03350.1 ID=NO01G03350.1|Name=NO01G03350.1|organism=Nannochloropsis oceanica|type=mRNA|length=1206bp ACAGCAAATGGCATTTGTTTTGTCCAGCGCTTCGAGACGAGCACTTGGTG CCGCTAGGGTAGGCTCGCTCTTGCAGCGCGCCTCCCTCGCAAGTGTCATG ACGGGTACACGAAGCATCGGCAGCGACTCGCGCGTAGTGTGCATTACTTC TGGGAAAGGCGGCGTGGGCAAGACTACGACGGCAGCCAGCATTGGAATGG GGCTAGCGTTGAAGGGAAAGAGGACTTGCGTGATTGATTTTGATATTGGT TTGCGTAACTTGGACATACATTTGGGCGCAGAACGAAGAGTGATCTTCGA TTTTGTCCACGTTCTGCACGGAGACTGCACGCTCAAGCAAGCCATGATCA AGGACAAGCGCAATCCGAACTTGTACCTCCTGGCTGCCTCACAAACCAAG GATAAGAACGCCCTGACCGTCGAAGGGGTCGGCAAGATGCTCGCGGAAAT GCGGCGGGAATTCGACTTTATCATCTGTGATTCCCCGGCTGGGATTGAGA GTGGGGCGAAGCACGCCATGTATTTCGCGGATGATGCCATCATTGTGACA AATCCCGAGTTGAGCTCGTGCCGCGACAGCGACAAGATGATCGGTTTCAT TTCCAGCAAGTCCAAACGGGCCGAGCTGGGCCAAGAGCCCGTGCGGCAAT CATTGCTAGTCACGCGATACGACCCCGAGCGGGCGGAGAAAGAGGAATGC TTGCGGTTGGAGGATATCAAGGAACTCCTGGGGCTAGAGCTGCTGGGCGT GATTCCCGAAAGCAAGTGCATCTTGACAGCCACTAACATCGGGCAACCCG TCATTTGCATGCCGGACCAAGACGCAGGACAAGCCTACATGGACACCGTG GAGCGTTTCATGGGAGAAGAGAAGGAGTTCCGTTTCCTGAGCCCCAAGCC CACGGGCATCCTATCAATGTTGTTTTCGTGAGTATCGGCTTGGATGGGTC AAGATCTTAACTCTTCGTCCGCGTGGACATTCGAGGGAGGGAGGGGAGGA AGGGAGGGAGGTGGGGAGGGTGTCCTTGCGGTGAAGGGGGTTAGAAGGAA GACAAGGGAGGAGGAATGGAGGATGGAGAAGGAAAATGCTACCGCCGATT GATGGGTCACCTGGCTGCATCCCCTTATTCATTTCCGCGTGTGTATTTAT GCTCTACATTTTTTGAGGCCCGCAACAAAGAAAAACGAAAACCATCGCTG CTGAGA back to topprotein sequence of NO01G03350.1 >NO01G03350.1-protein ID=NO01G03350.1-protein|Name=NO01G03350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=308bp MAFVLSSASRRALGAARVGSLLQRASLASVMTGTRSIGSDSRVVCITSGK GGVGKTTTAASIGMGLALKGKRTCVIDFDIGLRNLDIHLGAERRVIFDFV HVLHGDCTLKQAMIKDKRNPNLYLLAASQTKDKNALTVEGVGKMLAEMRR EFDFIICDSPAGIESGAKHAMYFADDAIIVTNPELSSCRDSDKMIGFISS KSKRAELGQEPVRQSLLVTRYDPERAEKEECLRLEDIKELLGLELLGVIP ESKCILTATNIGQPVICMPDQDAGQAYMDTVERFMGEEKEFRFLSPKPTG ILSMLFS* back to topmRNA from alignment at chr1:876599..878465+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G03350.1 ID=NO01G03350.1|Name=NO01G03350.1|organism=Nannochloropsis oceanica|type=mRNA|length=1867bp|location=Sequence derived from alignment at chr1:876599..878465+ (Nannochloropsis oceanica) ACAGCAAATGGCATTTGTTTTGTCCAGCGCTTCGAGACGAGCACTTGGTG
CCGCTAGGGTAGGCTCGCTCTTGCAGCGCGCCTCCCTCGCAAGTGTCATG
ACGGGTACACGAAGCATCGGCAGCGACTCGCGCGTAGTGTGCATTACTTC
TGGGAAAGGCGGCGTGGGCAAGACTACGACGGCAGCCAGCATTGGAATGG
GGCTAGCGTTGAAGGGAAAGAGGACTTGCGTGATTGATTTTGATATTGGT
TTGCGTAACTTGGACATACATTTGGTACGTGTGTGATGACGGGTGTAGCG
AGGGTGGCAAGGGTGAGGTTTGATGTAGATCAATCGCAGCAGACTACATT
GCTCGAGGCCTTCTTCTACTTGTCCTCTTTATGTTTATTGTTATGTTCAA
TTTAATTATTGCTATCACTCCCTTTTTTTAACCCATCCCTCCCCCCCTCT
TTCATCGCACTCTAGGGCGCAGAACGAAGAGTGATCTTCGATTTTGTCCA
CGTTCTGCACGGAGACTGCACGCTCAAGCAAGCCATGATCAAGGACAAGC
GCAATCCGAACTTGTACCTCCTGGCTGCCTCACAAACCAAGGATAAGAAC
GCCCTGACCGTCGAAGGGGTCGGCAAGATGCTCGCGGAAATGCGGCGGGA
ATTCGACTTTATCATCTGTGATTCCCCGGCTGGGATTGAGAGTGGGGCGA
AGCACGCCATGTATTTCGCGGATGATGCCATCATTGTGACAAATCCCGAG
TTGAGCTCGTGCCGGTAGTTCTTAGGGCAGGGCGGGCGGGCGGGCGGGAG
GGAGGGAGGGAGGGAGAGAGGGAGGGAAGGAGGGTTGCATGTGATCGATT
CGTCTCTCATAACGCGAGGAATTTTGATAAATGATCCCTCCCTTTCTCCT
TCCCTCCTTCCCACCCTTCCACTCTTTCCCCTCCCTCCCTTATCCCGCAG
CGACAGCGACAAGATGATCGGTTTCATTTCCAGCAAGTCCAAACGGGCCG
AGCTGGGCCAAGAGCCCGTGCGGCAATCATTGCTAGTCACGCGATACGAC
CCCGAGCGGGCGGAGAAAGAGGAATGCTTGCGGTTGGAGGATATCAAGGT
ACGTCTCTCGGCTTGTAGGGGTGCTTGCTGGGAGCTTTAACTCAATATGA
AGACAACATGGGAAGTCTTCACTTATCCCGGCCCAACCCATACCATCTCT
CTATCCCACCTTCCCTCCCTCACGCCCTCTCCCATTCTACCCTTCTCGTC
CTCCTCCTATCCCTACAGGAACTCCTGGGGCTAGAGCTGCTGGGCGTGAT
TCCCGAAAGCAAGTGCATCTTGACAGCCACTAACATCGGGCAACCCGTCA
TTTGCATGCCGGACCAAGACGCAGGACAAGGTGAGGACAGAGAACGGGGG
GGGGGCGAATTTAGTGGACTCCCTTCCAACAATTGGTCTTATACAATGAT
TTACTCATGGATGTACACACCCTGCCGCCTTCCCCCCCTCACAGCCTACA
TGGACACCGTGGAGCGTTTCATGGGAGAAGAGAAGGAGTTCCGTTTCCTG
AGCCCCAAGCCCACGGGCATCCTATCAATGTTGTTTTCGTGAGTATCGGC
TTGGATGGGTCAAGATCTTAACTCTTCGTCCGCGTGGACATTCGAGGGAG
GGAGGGGAGGAAGGGAGGGAGGTGGGGAGGGTGTCCTTGCGGTGAAGGGG
GTTAGAAGGAAGACAAGGGAGGAGGAATGGAGGATGGAGAAGGAAAATGC
TACCGCCGATTGATGGGTCACCTGGCTGCATCCCCTTATTCATTTCCGCG
TGTGTATTTATGCTCTACATTTTTTGAGGCCCGCAACAAAGAAAAACGAA
AACCATCGCTGCTGAGA back to topCoding sequence (CDS) from alignment at chr1:876599..878465+ >NO01G03350.1 ID=NO01G03350.1|Name=NO01G03350.1|organism=Nannochloropsis oceanica|type=CDS|length=924bp|location=Sequence derived from alignment at chr1:876599..878465+ (Nannochloropsis oceanica) ATGGCATTTGTTTTGTCCAGCGCTTCGAGACGAGCACTTGGTGCCGCTAG GGTAGGCTCGCTCTTGCAGCGCGCCTCCCTCGCAAGTGTCATGACGGGTA CACGAAGCATCGGCAGCGACTCGCGCGTAGTGTGCATTACTTCTGGGAAA GGCGGCGTGGGCAAGACTACGACGGCAGCCAGCATTGGAATGGGGCTAGC GTTGAAGGGAAAGAGGACTTGCGTGATTGATTTTGATATTGGTTTGCGTA ACTTGGACATACATTTGGGCGCAGAACGAAGAGTGATCTTCGATTTTGTC CACGTTCTGCACGGAGACTGCACGCTCAAGCAAGCCATGATCAAGGACAA GCGCAATCCGAACTTGTACCTCCTGGCTGCCTCACAAACCAAGGATAAGA ACGCCCTGACCGTCGAAGGGGTCGGCAAGATGCTCGCGGAAATGCGGCGG GAATTCGACTTTATCATCTGTGATTCCCCGGCTGGGATTGAGAGTGGGGC GAAGCACGCCATGTATTTCGCGGATGATGCCATCATTGTGACAAATCCCG AGTTGAGCTCGTGCCGCGACAGCGACAAGATGATCGGTTTCATTTCCAGC AAGTCCAAACGGGCCGAGCTGGGCCAAGAGCCCGTGCGGCAATCATTGCT AGTCACGCGATACGACCCCGAGCGGGCGGAGAAAGAGGAATGCTTGCGGT TGGAGGATATCAAGGAACTCCTGGGGCTAGAGCTGCTGGGCGTGATTCCC GAAAGCAAGTGCATCTTGACAGCCACTAACATCGGGCAACCCGTCATTTG CATGCCGGACCAAGACGCAGGACAAGCCTACATGGACACCGTGGAGCGTT TCATGGGAGAAGAGAAGGAGTTCCGTTTCCTGAGCCCCAAGCCCACGGGC ATCCTATCAATGTTGTTTTCGTGA back to top
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