NO01G03350.1, NO01G03350.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G03350.1
Unique NameNO01G03350.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1206
Alignment locationchr1:876599..878465 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:876599..878465 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G03350.1 vs.
Match: EWM29264.1 (septum site-determining protein [Nannochloropsis gaditana])

HSP 1 Score: 522.3 bits (1344), Expect = 1.000e-144
Identity = 259/273 (94.87%), Postives = 270/273 (98.90%), Query Frame = 0 
Query:   35 RSIGSDSRVVCITSGKGGVGKTTTAASIGMGLALKGKRTCVIDFDIGLRNLDIHLGAERRVIFDFVHVLHGDCTLKQAMIKDKRNPNLYLLAASQTKDKNALTVEGVGKMLAEMRREFDFIICDSPAGIESGAKHAMYFADDAIIVTNPELSSCRDSDKMIGFISSKSKRAELGQEPVRQSLLVTRYDPERAEKEECLRLEDIKELLGLELLGVIPESKCILTATNIGQPVICMPDQDAGQAYMDTVERFMGEEKEFRFLSPKPTGILSMLFS 308
            RS+ SDSRV+CITSGKGGVGKTTTAASIGMGLALKGK+TCVIDFDIGLRNLDIHLGAERRVIFDFVHVL GDCTLKQAMIKDKRNPNL+LLAASQTKDKNALTV+ VGKMLAEMRREFDFIICDSPAGIESGA+HAMYFADDAIIVTNPELSSCRDSDKMIGFISS+SKRAELGQEPVRQSLLVTRYDPERA+KEECLRLEDIKELLGLELLGVIPESKCILTATN+GQPVICMPDQDAGQAYMDTVERF+GEEKEFRFLSP+PTGILSMLFS
Sbjct:   44 RSVASDSRVLCITSGKGGVGKTTTAASIGMGLALKGKKTCVIDFDIGLRNLDIHLGAERRVIFDFVHVLQGDCTLKQAMIKDKRNPNLFLLAASQTKDKNALTVDAVGKMLAEMRREFDFIICDSPAGIESGARHAMYFADDAIIVTNPELSSCRDSDKMIGFISSRSKRAELGQEPVRQSLLVTRYDPERAQKEECLRLEDIKELLGLELLGVIPESKCILTATNLGQPVICMPDQDAGQAYMDTVERFLGEEKEFRFLSPRPTGILSMLFS 316
The following BLAST results are available for this feature:
BLAST of NO01G03350.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29264.11.000e-14494.87septum site-determining protein [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G03350NO01G03350Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G03350.1NO01G03350.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G03350.1.cds1NO01G03350.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03350.1.cds2NO01G03350.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03350.1.cds3NO01G03350.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03350.1.cds4NO01G03350.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03350.1.cds5NO01G03350.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G03350.1 ID=NO01G03350.1|Name=NO01G03350.1|organism=Nannochloropsis oceanica|type=mRNA|length=1206bp
ACAGCAAATGGCATTTGTTTTGTCCAGCGCTTCGAGACGAGCACTTGGTG
CCGCTAGGGTAGGCTCGCTCTTGCAGCGCGCCTCCCTCGCAAGTGTCATG
ACGGGTACACGAAGCATCGGCAGCGACTCGCGCGTAGTGTGCATTACTTC
TGGGAAAGGCGGCGTGGGCAAGACTACGACGGCAGCCAGCATTGGAATGG
GGCTAGCGTTGAAGGGAAAGAGGACTTGCGTGATTGATTTTGATATTGGT
TTGCGTAACTTGGACATACATTTGGGCGCAGAACGAAGAGTGATCTTCGA
TTTTGTCCACGTTCTGCACGGAGACTGCACGCTCAAGCAAGCCATGATCA
AGGACAAGCGCAATCCGAACTTGTACCTCCTGGCTGCCTCACAAACCAAG
GATAAGAACGCCCTGACCGTCGAAGGGGTCGGCAAGATGCTCGCGGAAAT
GCGGCGGGAATTCGACTTTATCATCTGTGATTCCCCGGCTGGGATTGAGA
GTGGGGCGAAGCACGCCATGTATTTCGCGGATGATGCCATCATTGTGACA
AATCCCGAGTTGAGCTCGTGCCGCGACAGCGACAAGATGATCGGTTTCAT
TTCCAGCAAGTCCAAACGGGCCGAGCTGGGCCAAGAGCCCGTGCGGCAAT
CATTGCTAGTCACGCGATACGACCCCGAGCGGGCGGAGAAAGAGGAATGC
TTGCGGTTGGAGGATATCAAGGAACTCCTGGGGCTAGAGCTGCTGGGCGT
GATTCCCGAAAGCAAGTGCATCTTGACAGCCACTAACATCGGGCAACCCG
TCATTTGCATGCCGGACCAAGACGCAGGACAAGCCTACATGGACACCGTG
GAGCGTTTCATGGGAGAAGAGAAGGAGTTCCGTTTCCTGAGCCCCAAGCC
CACGGGCATCCTATCAATGTTGTTTTCGTGAGTATCGGCTTGGATGGGTC
AAGATCTTAACTCTTCGTCCGCGTGGACATTCGAGGGAGGGAGGGGAGGA
AGGGAGGGAGGTGGGGAGGGTGTCCTTGCGGTGAAGGGGGTTAGAAGGAA
GACAAGGGAGGAGGAATGGAGGATGGAGAAGGAAAATGCTACCGCCGATT
GATGGGTCACCTGGCTGCATCCCCTTATTCATTTCCGCGTGTGTATTTAT
GCTCTACATTTTTTGAGGCCCGCAACAAAGAAAAACGAAAACCATCGCTG
CTGAGA
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protein sequence of NO01G03350.1

>NO01G03350.1-protein ID=NO01G03350.1-protein|Name=NO01G03350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=308bp
MAFVLSSASRRALGAARVGSLLQRASLASVMTGTRSIGSDSRVVCITSGK
GGVGKTTTAASIGMGLALKGKRTCVIDFDIGLRNLDIHLGAERRVIFDFV
HVLHGDCTLKQAMIKDKRNPNLYLLAASQTKDKNALTVEGVGKMLAEMRR
EFDFIICDSPAGIESGAKHAMYFADDAIIVTNPELSSCRDSDKMIGFISS
KSKRAELGQEPVRQSLLVTRYDPERAEKEECLRLEDIKELLGLELLGVIP
ESKCILTATNIGQPVICMPDQDAGQAYMDTVERFMGEEKEFRFLSPKPTG
ILSMLFS*
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mRNA from alignment at chr1:876599..878465+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G03350.1 ID=NO01G03350.1|Name=NO01G03350.1|organism=Nannochloropsis oceanica|type=mRNA|length=1867bp|location=Sequence derived from alignment at chr1:876599..878465+ (Nannochloropsis oceanica)
ACAGCAAATGGCATTTGTTTTGTCCAGCGCTTCGAGACGAGCACTTGGTG
CCGCTAGGGTAGGCTCGCTCTTGCAGCGCGCCTCCCTCGCAAGTGTCATG
ACGGGTACACGAAGCATCGGCAGCGACTCGCGCGTAGTGTGCATTACTTC
TGGGAAAGGCGGCGTGGGCAAGACTACGACGGCAGCCAGCATTGGAATGG
GGCTAGCGTTGAAGGGAAAGAGGACTTGCGTGATTGATTTTGATATTGGT
TTGCGTAACTTGGACATACATTTGGTACGTGTGTGATGACGGGTGTAGCG
AGGGTGGCAAGGGTGAGGTTTGATGTAGATCAATCGCAGCAGACTACATT
GCTCGAGGCCTTCTTCTACTTGTCCTCTTTATGTTTATTGTTATGTTCAA
TTTAATTATTGCTATCACTCCCTTTTTTTAACCCATCCCTCCCCCCCTCT
TTCATCGCACTCTAGGGCGCAGAACGAAGAGTGATCTTCGATTTTGTCCA
CGTTCTGCACGGAGACTGCACGCTCAAGCAAGCCATGATCAAGGACAAGC
GCAATCCGAACTTGTACCTCCTGGCTGCCTCACAAACCAAGGATAAGAAC
GCCCTGACCGTCGAAGGGGTCGGCAAGATGCTCGCGGAAATGCGGCGGGA
ATTCGACTTTATCATCTGTGATTCCCCGGCTGGGATTGAGAGTGGGGCGA
AGCACGCCATGTATTTCGCGGATGATGCCATCATTGTGACAAATCCCGAG
TTGAGCTCGTGCCGGTAGTTCTTAGGGCAGGGCGGGCGGGCGGGCGGGAG
GGAGGGAGGGAGGGAGAGAGGGAGGGAAGGAGGGTTGCATGTGATCGATT
CGTCTCTCATAACGCGAGGAATTTTGATAAATGATCCCTCCCTTTCTCCT
TCCCTCCTTCCCACCCTTCCACTCTTTCCCCTCCCTCCCTTATCCCGCAG
CGACAGCGACAAGATGATCGGTTTCATTTCCAGCAAGTCCAAACGGGCCG
AGCTGGGCCAAGAGCCCGTGCGGCAATCATTGCTAGTCACGCGATACGAC
CCCGAGCGGGCGGAGAAAGAGGAATGCTTGCGGTTGGAGGATATCAAGGT
ACGTCTCTCGGCTTGTAGGGGTGCTTGCTGGGAGCTTTAACTCAATATGA
AGACAACATGGGAAGTCTTCACTTATCCCGGCCCAACCCATACCATCTCT
CTATCCCACCTTCCCTCCCTCACGCCCTCTCCCATTCTACCCTTCTCGTC
CTCCTCCTATCCCTACAGGAACTCCTGGGGCTAGAGCTGCTGGGCGTGAT
TCCCGAAAGCAAGTGCATCTTGACAGCCACTAACATCGGGCAACCCGTCA
TTTGCATGCCGGACCAAGACGCAGGACAAGGTGAGGACAGAGAACGGGGG
GGGGGCGAATTTAGTGGACTCCCTTCCAACAATTGGTCTTATACAATGAT
TTACTCATGGATGTACACACCCTGCCGCCTTCCCCCCCTCACAGCCTACA
TGGACACCGTGGAGCGTTTCATGGGAGAAGAGAAGGAGTTCCGTTTCCTG
AGCCCCAAGCCCACGGGCATCCTATCAATGTTGTTTTCGTGAGTATCGGC
TTGGATGGGTCAAGATCTTAACTCTTCGTCCGCGTGGACATTCGAGGGAG
GGAGGGGAGGAAGGGAGGGAGGTGGGGAGGGTGTCCTTGCGGTGAAGGGG
GTTAGAAGGAAGACAAGGGAGGAGGAATGGAGGATGGAGAAGGAAAATGC
TACCGCCGATTGATGGGTCACCTGGCTGCATCCCCTTATTCATTTCCGCG
TGTGTATTTATGCTCTACATTTTTTGAGGCCCGCAACAAAGAAAAACGAA
AACCATCGCTGCTGAGA
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Coding sequence (CDS) from alignment at chr1:876599..878465+

>NO01G03350.1 ID=NO01G03350.1|Name=NO01G03350.1|organism=Nannochloropsis oceanica|type=CDS|length=924bp|location=Sequence derived from alignment at chr1:876599..878465+ (Nannochloropsis oceanica)
ATGGCATTTGTTTTGTCCAGCGCTTCGAGACGAGCACTTGGTGCCGCTAG
GGTAGGCTCGCTCTTGCAGCGCGCCTCCCTCGCAAGTGTCATGACGGGTA
CACGAAGCATCGGCAGCGACTCGCGCGTAGTGTGCATTACTTCTGGGAAA
GGCGGCGTGGGCAAGACTACGACGGCAGCCAGCATTGGAATGGGGCTAGC
GTTGAAGGGAAAGAGGACTTGCGTGATTGATTTTGATATTGGTTTGCGTA
ACTTGGACATACATTTGGGCGCAGAACGAAGAGTGATCTTCGATTTTGTC
CACGTTCTGCACGGAGACTGCACGCTCAAGCAAGCCATGATCAAGGACAA
GCGCAATCCGAACTTGTACCTCCTGGCTGCCTCACAAACCAAGGATAAGA
ACGCCCTGACCGTCGAAGGGGTCGGCAAGATGCTCGCGGAAATGCGGCGG
GAATTCGACTTTATCATCTGTGATTCCCCGGCTGGGATTGAGAGTGGGGC
GAAGCACGCCATGTATTTCGCGGATGATGCCATCATTGTGACAAATCCCG
AGTTGAGCTCGTGCCGCGACAGCGACAAGATGATCGGTTTCATTTCCAGC
AAGTCCAAACGGGCCGAGCTGGGCCAAGAGCCCGTGCGGCAATCATTGCT
AGTCACGCGATACGACCCCGAGCGGGCGGAGAAAGAGGAATGCTTGCGGT
TGGAGGATATCAAGGAACTCCTGGGGCTAGAGCTGCTGGGCGTGATTCCC
GAAAGCAAGTGCATCTTGACAGCCACTAACATCGGGCAACCCGTCATTTG
CATGCCGGACCAAGACGCAGGACAAGCCTACATGGACACCGTGGAGCGTT
TCATGGGAGAAGAGAAGGAGTTCCGTTTCCTGAGCCCCAAGCCCACGGGC
ATCCTATCAATGTTGTTTTCGTGA
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Synonyms
Publications